Wall clock time and date at job start Mon Mar 30 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21304 * 119.99725 * 2 1 4 4 C 1.46782 * 120.00177 * 179.97438 * 2 1 3 5 5 C 1.40030 * 120.21262 * 0.27625 * 4 2 1 6 6 C 1.37875 * 119.85576 * 180.29608 * 5 4 2 7 7 F 1.35093 * 119.85935 * 179.70376 * 6 5 4 8 8 C 1.38810 * 120.28579 * 359.68005 * 6 5 4 9 9 C 1.38051 * 120.43007 * 0.02562 * 8 6 5 10 10 C 1.38668 * 120.14142 * 0.02763 * 9 8 6 11 11 O 1.35640 * 120.14557 * 179.97438 * 10 9 8 12 12 C 1.42901 * 117.00251 * 354.50837 * 11 10 9 13 13 H 1.08999 * 109.46906 * 324.94889 * 12 11 10 14 14 C 1.53002 * 109.46916 * 84.94832 * 12 11 10 15 15 C 1.53000 * 109.47248 * 204.95200 * 12 11 10 16 16 C 1.50693 * 109.47449 * 64.99853 * 15 12 11 17 17 H 1.08005 * 119.99857 * 359.97438 * 16 15 12 18 18 C 1.37879 * 120.00200 * 179.72429 * 16 15 12 19 19 N 1.31513 * 120.00134 * 180.27702 * 18 16 15 20 20 Si 1.86793 * 119.99919 * 0.27644 * 18 16 15 21 21 H 1.48503 * 109.47101 * 89.99897 * 20 18 16 22 22 H 1.48499 * 109.47563 * 209.99968 * 20 18 16 23 23 H 1.48499 * 109.47135 * 330.00191 * 20 18 16 24 24 H 1.09000 * 109.47429 * 269.99753 * 1 2 3 25 25 H 1.08997 * 109.47132 * 30.00451 * 1 2 3 26 26 H 1.08997 * 109.46979 * 150.00100 * 1 2 3 27 27 H 1.08003 * 120.07257 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.78329 * 180.02562 * 8 6 5 29 29 H 1.08001 * 119.93196 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.46586 * 60.00314 * 14 12 11 31 31 H 1.08999 * 109.47044 * 180.02562 * 14 12 11 32 32 H 1.08996 * 109.46822 * 300.00464 * 14 12 11 33 33 H 1.09001 * 109.46649 * 304.99779 * 15 12 11 34 34 H 1.08997 * 109.46974 * 184.99950 * 15 12 11 35 35 H 0.96994 * 120.00243 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2409 -1.2711 0.0006 5 6 1.5453 -2.4864 -0.0047 6 6 2.2421 -3.6762 0.0020 7 9 1.5711 -4.8486 0.0030 8 6 3.6302 -3.6744 0.0074 9 6 4.3279 -2.4832 0.0065 10 6 3.6451 -1.2763 0.0008 11 8 4.3306 -0.1058 0.0005 12 6 5.7516 -0.1861 0.1280 13 1 6.0111 -1.0154 0.7861 14 6 6.3752 -0.4145 -1.2504 15 6 6.2853 1.1203 0.7191 16 6 5.7676 1.2840 2.1248 17 1 5.1220 0.5318 2.5536 18 6 6.1221 2.3917 2.8655 19 7 5.6747 2.5319 4.0942 20 14 7.2380 3.6931 2.1236 21 1 6.4129 4.7218 1.4408 22 1 8.0360 4.3331 3.2001 23 1 8.1522 3.0591 1.1401 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4653 -2.4919 -0.0097 28 1 4.1678 -4.6110 0.0122 29 1 5.4079 -2.4912 0.0111 30 1 6.1156 0.4148 -1.9084 31 1 7.4591 -0.4762 -1.1531 32 1 5.9949 -1.3452 -1.6715 33 1 5.9504 1.9588 0.1086 34 1 7.3748 1.0939 0.7340 35 1 5.9238 3.3113 4.6150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:04 Heat of formation + Delta-G solvation = -98.486929 kcal Electronic energy + Delta-G solvation = -20139.015508 eV Core-core repulsion = 16824.173626 eV Total energy + Delta-G solvation = -3314.841882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.78478 -40.31579 -38.42710 -37.08833 -33.51180 -32.12922 -31.71393 -29.40050 -28.99317 -28.04044 -24.12229 -23.44093 -22.20683 -20.37917 -19.73409 -17.94367 -17.05545 -16.75233 -16.58588 -15.61745 -15.14891 -14.98470 -14.71554 -14.52883 -14.38757 -14.28649 -13.76456 -13.00632 -12.84894 -12.66978 -12.36670 -12.17400 -12.04413 -11.93422 -11.79657 -11.73215 -11.34859 -10.96571 -10.71577 -10.20315 -9.92058 -9.63177 -9.31361 -9.23827 -9.15537 -8.51775 -7.87979 -6.01332 -3.98981 0.70047 1.30847 2.61733 3.33109 3.39528 3.40089 3.57909 3.75462 4.13792 4.37008 4.46437 4.67138 4.81692 5.11105 5.20784 5.31914 5.40958 5.41563 5.46908 5.51827 5.55318 5.73013 5.75997 5.92013 6.00046 6.03963 6.08407 6.29090 6.41927 6.48512 6.70348 7.02075 7.14926 7.71772 7.88629 7.95605 8.52578 9.02188 9.59156 11.12404 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.005822 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.735137 B = 4808.315416 C = 5341.292604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.382 3.618 3 O -0.415 6.415 4 C -0.190 4.190 5 C -0.071 4.071 6 C 0.028 3.972 7 F -0.145 7.145 8 C -0.080 4.080 9 C -0.202 4.202 10 C 0.198 3.802 11 O -0.253 6.253 12 C 0.087 3.913 13 H 0.070 0.930 14 C -0.181 4.181 15 C -0.009 4.009 16 C -0.512 4.512 17 H 0.071 0.929 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.267 1.267 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.038 0.962 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -11.629 -10.682 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.257 3.743 3 O -0.288 6.288 4 C -0.191 4.191 5 C -0.090 4.090 6 C 0.009 3.991 7 F -0.124 7.124 8 C -0.099 4.099 9 C -0.220 4.220 10 C 0.147 3.853 11 O -0.163 6.163 12 C 0.031 3.969 13 H 0.088 0.912 14 C -0.238 4.238 15 C -0.046 4.046 16 C -0.550 4.550 17 H 0.089 0.911 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.706 3.294 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.164 0.836 28 H 0.155 0.845 29 H 0.164 0.836 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.232 -10.744 -10.540 16.291 hybrid contribution 0.564 0.160 -0.151 0.605 sum -5.668 -10.584 -10.691 16.077 Atomic orbital electron populations 1.22211 0.94275 1.04261 1.04572 1.22045 0.91130 0.87506 0.73586 1.90719 1.71466 1.33254 1.33334 1.19801 0.91052 0.95328 1.12963 1.21179 1.00552 0.89748 0.97539 1.17291 0.90107 0.81177 1.10570 1.91468 1.80449 1.45689 1.94800 1.21093 0.92242 0.99161 0.97430 1.21282 1.01370 0.91055 1.08342 1.19489 0.91046 0.86498 0.88263 1.86486 1.21438 1.25190 1.83138 1.22786 0.76610 1.02355 0.95126 0.91161 1.22465 1.01465 1.01841 0.98061 1.19725 0.96047 0.91386 0.97479 1.20939 1.30286 1.07959 0.95835 0.91070 1.24970 0.95890 0.97734 0.94701 1.69903 1.45387 1.29329 1.09409 0.86808 0.81206 0.82415 0.79001 1.20130 1.21369 1.19133 0.88709 0.89604 0.90138 0.83615 0.84473 0.83603 0.91646 0.91049 0.92908 0.95513 0.94410 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 9.76 36.00 0.35 -1.82 16 2 C 0.38 6.37 7.21 -30.86 -0.22 6.15 16 3 O -0.42 -9.10 15.91 -16.39 -0.26 -9.36 16 4 C -0.19 -3.03 5.88 -104.95 -0.62 -3.65 16 5 C -0.07 -0.90 9.33 -39.04 -0.36 -1.27 16 6 C 0.03 0.36 7.28 -39.50 -0.29 0.07 16 7 F -0.15 -1.83 17.26 2.25 0.04 -1.79 16 8 C -0.08 -1.01 10.01 -39.44 -0.39 -1.40 16 9 C -0.20 -2.95 8.23 -39.49 -0.33 -3.27 16 10 C 0.20 3.52 6.62 -38.60 -0.26 3.26 16 11 O -0.25 -5.39 7.62 -40.55 -0.31 -5.69 16 12 C 0.09 1.71 2.17 -26.73 -0.06 1.65 16 13 H 0.07 1.32 6.31 -51.93 -0.33 1.00 16 14 C -0.18 -2.77 9.17 37.16 0.34 -2.43 16 15 C -0.01 -0.22 3.75 -27.89 -0.10 -0.33 16 16 C -0.51 -14.86 9.43 -34.44 -0.32 -15.19 16 17 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 20 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 0.65 6.45 -51.93 -0.34 0.31 16 27 H 0.15 1.37 6.35 -52.48 -0.33 1.04 16 28 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.15 1.94 5.42 -52.49 -0.28 1.65 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16 33 H 0.03 0.66 7.58 -51.93 -0.39 0.27 16 34 H 0.04 0.86 7.19 -51.93 -0.37 0.49 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -34.21 300.42 -6.37 -40.57 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.11 Total: -1.70 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.36 Total: -16.30 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.77 Total: -27.57 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.57 Total: -15.05 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.21 -6.37 -40.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.916 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds