Wall clock time and date at job start Mon Mar 30 2020 07:09:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21304 * 119.99725 * 2 1
4 4 C 1.46782 * 120.00177 * 179.97438 * 2 1 3
5 5 C 1.40030 * 120.21262 * 0.27625 * 4 2 1
6 6 C 1.37875 * 119.85576 * 180.29608 * 5 4 2
7 7 F 1.35093 * 119.85935 * 179.70376 * 6 5 4
8 8 C 1.38810 * 120.28579 * 359.68005 * 6 5 4
9 9 C 1.38051 * 120.43007 * 0.02562 * 8 6 5
10 10 C 1.38668 * 120.14142 * 0.02763 * 9 8 6
11 11 O 1.35640 * 120.14557 * 179.97438 * 10 9 8
12 12 C 1.42901 * 117.00251 * 354.50837 * 11 10 9
13 13 H 1.08999 * 109.46906 * 324.94889 * 12 11 10
14 14 C 1.53002 * 109.46916 * 84.94832 * 12 11 10
15 15 C 1.53000 * 109.47248 * 204.95200 * 12 11 10
16 16 C 1.50693 * 109.47449 * 64.99853 * 15 12 11
17 17 H 1.08005 * 119.99857 * 359.97438 * 16 15 12
18 18 C 1.37879 * 120.00200 * 179.72429 * 16 15 12
19 19 N 1.31513 * 120.00134 * 180.27702 * 18 16 15
20 20 Si 1.86793 * 119.99919 * 0.27644 * 18 16 15
21 21 H 1.48503 * 109.47101 * 89.99897 * 20 18 16
22 22 H 1.48499 * 109.47563 * 209.99968 * 20 18 16
23 23 H 1.48499 * 109.47135 * 330.00191 * 20 18 16
24 24 H 1.09000 * 109.47429 * 269.99753 * 1 2 3
25 25 H 1.08997 * 109.47132 * 30.00451 * 1 2 3
26 26 H 1.08997 * 109.46979 * 150.00100 * 1 2 3
27 27 H 1.08003 * 120.07257 * 0.02562 * 5 4 2
28 28 H 1.07996 * 119.78329 * 180.02562 * 8 6 5
29 29 H 1.08001 * 119.93196 * 179.97438 * 9 8 6
30 30 H 1.09004 * 109.46586 * 60.00314 * 14 12 11
31 31 H 1.08999 * 109.47044 * 180.02562 * 14 12 11
32 32 H 1.08996 * 109.46822 * 300.00464 * 14 12 11
33 33 H 1.09001 * 109.46649 * 304.99779 * 15 12 11
34 34 H 1.08997 * 109.46974 * 184.99950 * 15 12 11
35 35 H 0.96994 * 120.00243 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0506 0.0000
4 6 2.2409 -1.2711 0.0006
5 6 1.5453 -2.4864 -0.0047
6 6 2.2421 -3.6762 0.0020
7 9 1.5711 -4.8486 0.0030
8 6 3.6302 -3.6744 0.0074
9 6 4.3279 -2.4832 0.0065
10 6 3.6451 -1.2763 0.0008
11 8 4.3306 -0.1058 0.0005
12 6 5.7516 -0.1861 0.1280
13 1 6.0111 -1.0154 0.7861
14 6 6.3752 -0.4145 -1.2504
15 6 6.2853 1.1203 0.7191
16 6 5.7676 1.2840 2.1248
17 1 5.1220 0.5318 2.5536
18 6 6.1221 2.3917 2.8655
19 7 5.6747 2.5319 4.0942
20 14 7.2380 3.6931 2.1236
21 1 6.4129 4.7218 1.4408
22 1 8.0360 4.3331 3.2001
23 1 8.1522 3.0591 1.1401
24 1 -0.3634 0.0000 1.0276
25 1 -0.3633 0.8899 -0.5139
26 1 -0.3633 -0.8900 -0.5138
27 1 0.4653 -2.4919 -0.0097
28 1 4.1678 -4.6110 0.0122
29 1 5.4079 -2.4912 0.0111
30 1 6.1156 0.4148 -1.9084
31 1 7.4591 -0.4762 -1.1531
32 1 5.9949 -1.3452 -1.6715
33 1 5.9504 1.9588 0.1086
34 1 7.3748 1.0939 0.7340
35 1 5.9238 3.3113 4.6150
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000829179770.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:09:04
Heat of formation + Delta-G solvation = -98.486929 kcal
Electronic energy + Delta-G solvation = -20139.015508 eV
Core-core repulsion = 16824.173626 eV
Total energy + Delta-G solvation = -3314.841882 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 266.110 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-48.78478 -40.31579 -38.42710 -37.08833 -33.51180 -32.12922 -31.71393 -29.40050
-28.99317 -28.04044 -24.12229 -23.44093 -22.20683 -20.37917 -19.73409 -17.94367
-17.05545 -16.75233 -16.58588 -15.61745 -15.14891 -14.98470 -14.71554 -14.52883
-14.38757 -14.28649 -13.76456 -13.00632 -12.84894 -12.66978 -12.36670 -12.17400
-12.04413 -11.93422 -11.79657 -11.73215 -11.34859 -10.96571 -10.71577 -10.20315
-9.92058 -9.63177 -9.31361 -9.23827 -9.15537 -8.51775 -7.87979 -6.01332
-3.98981 0.70047 1.30847 2.61733 3.33109 3.39528 3.40089 3.57909
3.75462 4.13792 4.37008 4.46437 4.67138 4.81692 5.11105 5.20784
5.31914 5.40958 5.41563 5.46908 5.51827 5.55318 5.73013 5.75997
5.92013 6.00046 6.03963 6.08407 6.29090 6.41927 6.48512 6.70348
7.02075 7.14926 7.71772 7.88629 7.95605 8.52578 9.02188 9.59156
11.12404
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.021588 B = 0.005822 C = 0.005241
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.735137 B = 4808.315416 C = 5341.292604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.382 3.618
3 O -0.415 6.415
4 C -0.190 4.190
5 C -0.071 4.071
6 C 0.028 3.972
7 F -0.145 7.145
8 C -0.080 4.080
9 C -0.202 4.202
10 C 0.198 3.802
11 O -0.253 6.253
12 C 0.087 3.913
13 H 0.070 0.930
14 C -0.181 4.181
15 C -0.009 4.009
16 C -0.512 4.512
17 H 0.071 0.929
18 C 0.068 3.932
19 N -0.901 5.901
20 Si 0.878 3.122
21 H -0.276 1.276
22 H -0.288 1.288
23 H -0.267 1.267
24 H 0.094 0.906
25 H 0.085 0.915
26 H 0.080 0.920
27 H 0.146 0.854
28 H 0.137 0.863
29 H 0.146 0.854
30 H 0.064 0.936
31 H 0.071 0.929
32 H 0.052 0.948
33 H 0.027 0.973
34 H 0.038 0.962
35 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.497 -11.629 -10.682 17.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.253 4.253
2 C 0.257 3.743
3 O -0.288 6.288
4 C -0.191 4.191
5 C -0.090 4.090
6 C 0.009 3.991
7 F -0.124 7.124
8 C -0.099 4.099
9 C -0.220 4.220
10 C 0.147 3.853
11 O -0.163 6.163
12 C 0.031 3.969
13 H 0.088 0.912
14 C -0.238 4.238
15 C -0.046 4.046
16 C -0.550 4.550
17 H 0.089 0.911
18 C -0.133 4.133
19 N -0.540 5.540
20 Si 0.706 3.294
21 H -0.201 1.201
22 H -0.214 1.214
23 H -0.191 1.191
24 H 0.113 0.887
25 H 0.104 0.896
26 H 0.099 0.901
27 H 0.164 0.836
28 H 0.155 0.845
29 H 0.164 0.836
30 H 0.084 0.916
31 H 0.090 0.910
32 H 0.071 0.929
33 H 0.045 0.955
34 H 0.056 0.944
35 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -6.232 -10.744 -10.540 16.291
hybrid contribution 0.564 0.160 -0.151 0.605
sum -5.668 -10.584 -10.691 16.077
Atomic orbital electron populations
1.22211 0.94275 1.04261 1.04572 1.22045 0.91130 0.87506 0.73586
1.90719 1.71466 1.33254 1.33334 1.19801 0.91052 0.95328 1.12963
1.21179 1.00552 0.89748 0.97539 1.17291 0.90107 0.81177 1.10570
1.91468 1.80449 1.45689 1.94800 1.21093 0.92242 0.99161 0.97430
1.21282 1.01370 0.91055 1.08342 1.19489 0.91046 0.86498 0.88263
1.86486 1.21438 1.25190 1.83138 1.22786 0.76610 1.02355 0.95126
0.91161 1.22465 1.01465 1.01841 0.98061 1.19725 0.96047 0.91386
0.97479 1.20939 1.30286 1.07959 0.95835 0.91070 1.24970 0.95890
0.97734 0.94701 1.69903 1.45387 1.29329 1.09409 0.86808 0.81206
0.82415 0.79001 1.20130 1.21369 1.19133 0.88709 0.89604 0.90138
0.83615 0.84473 0.83603 0.91646 0.91049 0.92908 0.95513 0.94410
0.92754
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.17 9.76 36.00 0.35 -1.82 16
2 C 0.38 6.37 7.21 -30.86 -0.22 6.15 16
3 O -0.42 -9.10 15.91 -16.39 -0.26 -9.36 16
4 C -0.19 -3.03 5.88 -104.95 -0.62 -3.65 16
5 C -0.07 -0.90 9.33 -39.04 -0.36 -1.27 16
6 C 0.03 0.36 7.28 -39.50 -0.29 0.07 16
7 F -0.15 -1.83 17.26 2.25 0.04 -1.79 16
8 C -0.08 -1.01 10.01 -39.44 -0.39 -1.40 16
9 C -0.20 -2.95 8.23 -39.49 -0.33 -3.27 16
10 C 0.20 3.52 6.62 -38.60 -0.26 3.26 16
11 O -0.25 -5.39 7.62 -40.55 -0.31 -5.69 16
12 C 0.09 1.71 2.17 -26.73 -0.06 1.65 16
13 H 0.07 1.32 6.31 -51.93 -0.33 1.00 16
14 C -0.18 -2.77 9.17 37.16 0.34 -2.43 16
15 C -0.01 -0.22 3.75 -27.89 -0.10 -0.33 16
16 C -0.51 -14.86 9.43 -34.44 -0.32 -15.19 16
17 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16
18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16
19 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16
20 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16
21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16
24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
26 H 0.08 0.65 6.45 -51.93 -0.34 0.31 16
27 H 0.15 1.37 6.35 -52.48 -0.33 1.04 16
28 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16
29 H 0.15 1.94 5.42 -52.49 -0.28 1.65 16
30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16
32 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16
33 H 0.03 0.66 7.58 -51.93 -0.39 0.27 16
34 H 0.04 0.86 7.19 -51.93 -0.37 0.49 16
35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
LS Contribution 300.42 15.07 4.53 4.53
Total: -1.00 -34.21 300.42 -6.37 -40.57
By element:
Atomic # 1 Polarization: 2.41 SS G_CDS: -4.11 Total: -1.70 kcal
Atomic # 6 Polarization: -13.94 SS G_CDS: -2.36 Total: -16.30 kcal
Atomic # 7 Polarization: -28.34 SS G_CDS: 0.77 Total: -27.57 kcal
Atomic # 8 Polarization: -14.48 SS G_CDS: -0.57 Total: -15.05 kcal
Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -34.21 -6.37 -40.57 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829179770.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.916 kcal
(2) G-P(sol) polarization free energy of solvation -34.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.121 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.487 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds