Wall clock time and date at job start Mon Mar 30 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21304 * 119.99725 * 2 1 4 4 C 1.46782 * 120.00177 * 179.97438 * 2 1 3 5 5 C 1.40030 * 120.21262 * 0.27625 * 4 2 1 6 6 C 1.37875 * 119.85576 * 180.29608 * 5 4 2 7 7 F 1.35093 * 119.85935 * 179.70376 * 6 5 4 8 8 C 1.38810 * 120.28579 * 359.68005 * 6 5 4 9 9 C 1.38051 * 120.43007 * 0.02562 * 8 6 5 10 10 C 1.38668 * 120.14142 * 0.02763 * 9 8 6 11 11 O 1.35640 * 120.14557 * 179.97438 * 10 9 8 12 12 C 1.42901 * 117.00251 * 354.50837 * 11 10 9 13 13 H 1.08999 * 109.46906 * 324.94889 * 12 11 10 14 14 C 1.53002 * 109.46916 * 84.94832 * 12 11 10 15 15 C 1.53000 * 109.47248 * 204.95200 * 12 11 10 16 16 C 1.50693 * 109.47449 * 64.99853 * 15 12 11 17 17 H 1.08005 * 119.99857 * 359.97438 * 16 15 12 18 18 C 1.37879 * 120.00200 * 179.72429 * 16 15 12 19 19 N 1.31513 * 120.00134 * 180.27702 * 18 16 15 20 20 Si 1.86793 * 119.99919 * 0.27644 * 18 16 15 21 21 H 1.48503 * 109.47101 * 89.99897 * 20 18 16 22 22 H 1.48499 * 109.47563 * 209.99968 * 20 18 16 23 23 H 1.48499 * 109.47135 * 330.00191 * 20 18 16 24 24 H 1.09000 * 109.47429 * 269.99753 * 1 2 3 25 25 H 1.08997 * 109.47132 * 30.00451 * 1 2 3 26 26 H 1.08997 * 109.46979 * 150.00100 * 1 2 3 27 27 H 1.08003 * 120.07257 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.78329 * 180.02562 * 8 6 5 29 29 H 1.08001 * 119.93196 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.46586 * 60.00314 * 14 12 11 31 31 H 1.08999 * 109.47044 * 180.02562 * 14 12 11 32 32 H 1.08996 * 109.46822 * 300.00464 * 14 12 11 33 33 H 1.09001 * 109.46649 * 304.99779 * 15 12 11 34 34 H 1.08997 * 109.46974 * 184.99950 * 15 12 11 35 35 H 0.96994 * 120.00243 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2409 -1.2711 0.0006 5 6 1.5453 -2.4864 -0.0047 6 6 2.2421 -3.6762 0.0020 7 9 1.5711 -4.8486 0.0030 8 6 3.6302 -3.6744 0.0074 9 6 4.3279 -2.4832 0.0065 10 6 3.6451 -1.2763 0.0008 11 8 4.3306 -0.1058 0.0005 12 6 5.7516 -0.1861 0.1280 13 1 6.0111 -1.0154 0.7861 14 6 6.3752 -0.4145 -1.2504 15 6 6.2853 1.1203 0.7191 16 6 5.7676 1.2840 2.1248 17 1 5.1220 0.5318 2.5536 18 6 6.1221 2.3917 2.8655 19 7 5.6747 2.5319 4.0942 20 14 7.2380 3.6931 2.1236 21 1 6.4129 4.7218 1.4408 22 1 8.0360 4.3331 3.2001 23 1 8.1522 3.0591 1.1401 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4653 -2.4919 -0.0097 28 1 4.1678 -4.6110 0.0122 29 1 5.4079 -2.4912 0.0111 30 1 6.1156 0.4148 -1.9084 31 1 7.4591 -0.4762 -1.1531 32 1 5.9949 -1.3452 -1.6715 33 1 5.9504 1.9588 0.1086 34 1 7.3748 1.0939 0.7340 35 1 5.9238 3.3113 4.6150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:03 Heat of formation + Delta-G solvation = -119.682297 kcal Electronic energy + Delta-G solvation = -20139.934608 eV Core-core repulsion = 16824.173626 eV Total energy + Delta-G solvation = -3315.760982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.80876 -41.58367 -39.81927 -38.34344 -35.42767 -33.70776 -33.15711 -30.50625 -30.15065 -29.78284 -25.23910 -25.11356 -23.68034 -21.79630 -21.01536 -19.26492 -18.92659 -18.22195 -17.79647 -16.73416 -16.48994 -16.25767 -16.18501 -15.92640 -15.63862 -15.54855 -15.24164 -14.68742 -14.25172 -13.97717 -13.82512 -13.63163 -13.50343 -13.12332 -13.00100 -12.84976 -12.69814 -12.53726 -12.24412 -11.89460 -11.73399 -11.45043 -11.26252 -10.79076 -10.60304 -10.25880 -9.10373 -8.29901 -6.33085 -0.43749 0.17612 1.32920 1.36516 1.41835 1.46192 2.27002 2.34775 2.59269 3.03301 3.06676 3.30008 3.62599 3.79082 3.92972 4.06638 4.16238 4.22853 4.31278 4.39954 4.53433 4.66695 4.74142 4.77476 4.86235 4.92878 4.99428 5.01351 5.10818 5.19326 5.26256 5.34132 5.59708 5.69518 6.21406 6.52055 6.70749 6.72909 7.28744 8.87737 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.005822 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.735137 B = 4808.315416 C = 5341.292604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.377 3.623 3 O -0.487 6.487 4 C -0.215 4.215 5 C -0.054 4.054 6 C 0.030 3.970 7 F -0.138 7.138 8 C -0.068 4.068 9 C -0.206 4.206 10 C 0.159 3.841 11 O -0.292 6.292 12 C 0.085 3.915 13 H 0.071 0.929 14 C -0.168 4.168 15 C -0.010 4.010 16 C -0.518 4.518 17 H 0.022 0.978 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.235 1.235 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.184 0.816 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.017 0.983 34 H 0.057 0.943 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -13.470 -12.510 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.256 3.744 3 O -0.365 6.365 4 C -0.216 4.216 5 C -0.073 4.073 6 C 0.011 3.989 7 F -0.117 7.117 8 C -0.087 4.087 9 C -0.225 4.225 10 C 0.110 3.890 11 O -0.204 6.204 12 C 0.030 3.970 13 H 0.089 0.911 14 C -0.225 4.225 15 C -0.047 4.047 16 C -0.556 4.556 17 H 0.040 0.960 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.775 3.225 21 H -0.203 1.203 22 H -0.206 1.206 23 H -0.158 1.158 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.137 0.863 27 H 0.201 0.799 28 H 0.188 0.812 29 H 0.174 0.826 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.152 -12.643 -12.388 18.739 hybrid contribution 0.378 0.537 0.474 0.810 sum -5.774 -12.106 -11.914 17.940 Atomic orbital electron populations 1.22241 0.89760 1.06410 1.05994 1.23016 0.93690 0.86777 0.70868 1.90690 1.73289 1.35399 1.37079 1.20066 0.90832 0.96463 1.14277 1.21457 1.02242 0.88268 0.95318 1.17395 0.90363 0.81383 1.09752 1.91497 1.80312 1.45236 1.94669 1.21435 0.92430 0.99633 0.95174 1.21400 1.01991 0.90605 1.08468 1.19981 0.92036 0.86566 0.90400 1.86408 1.21904 1.27650 1.84415 1.22687 0.76954 0.99808 0.97600 0.91121 1.22359 1.02450 1.02740 0.94993 1.19689 0.97056 0.93715 0.94221 1.21236 1.29186 1.06792 0.98418 0.95965 1.26030 0.97921 1.00514 0.95073 1.70074 1.47545 1.30493 1.11304 0.85645 0.79301 0.78813 0.78787 1.20252 1.20556 1.15794 0.87296 0.89200 0.86280 0.79933 0.81156 0.82597 0.92217 0.88825 0.90636 0.96478 0.92457 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.85 9.76 71.23 0.70 -3.15 16 2 C 0.38 12.85 7.21 27.92 0.20 13.05 16 3 O -0.49 -22.80 15.91 17.86 0.28 -22.52 16 4 C -0.21 -6.84 5.88 -20.08 -0.12 -6.95 16 5 C -0.05 -1.24 9.33 22.62 0.21 -1.03 16 6 C 0.03 0.69 7.28 22.32 0.16 0.85 16 7 F -0.14 -2.95 17.26 44.97 0.78 -2.18 16 8 C -0.07 -1.52 10.01 22.36 0.22 -1.30 16 9 C -0.21 -5.81 8.23 22.33 0.18 -5.62 16 10 C 0.16 5.78 6.62 22.90 0.15 5.93 16 11 O -0.29 -13.03 7.62 -68.58 -0.52 -13.55 16 12 C 0.08 3.39 2.17 30.59 0.07 3.46 16 13 H 0.07 2.72 6.31 -2.39 -0.02 2.70 16 14 C -0.17 -4.89 9.17 71.98 0.66 -4.23 16 15 C -0.01 -0.47 3.75 29.85 0.11 -0.36 16 16 C -0.52 -31.47 9.43 25.60 0.24 -31.23 16 17 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16 18 C 0.00 0.04 5.47 84.66 0.46 0.51 16 19 N -0.95 -62.54 13.96 21.45 0.30 -62.24 16 20 Si 0.95 45.91 27.47 68.60 1.88 47.80 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 24 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.12 1.47 6.45 -2.39 -0.02 1.46 16 27 H 0.18 2.64 6.35 -2.91 -0.02 2.63 16 28 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.16 3.94 5.42 -2.91 -0.02 3.93 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 1.84 6.91 -2.39 -0.02 1.82 16 33 H 0.02 0.85 7.58 -2.39 -0.02 0.83 16 34 H 0.06 2.53 7.19 -2.39 -0.02 2.51 16 35 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -81.02 300.42 7.03 -73.99 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.05 Total: 8.77 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.25 Total: -30.07 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.30 Total: -62.24 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.24 Total: -36.07 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -81.02 7.03 -73.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.694 kcal (2) G-P(sol) polarization free energy of solvation -81.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds