Wall clock time and date at job start Mon Mar 30 2020 07:09:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21304 * 119.99725 * 2 1
4 4 C 1.46782 * 120.00177 * 179.97438 * 2 1 3
5 5 C 1.40030 * 120.21262 * 0.27625 * 4 2 1
6 6 C 1.37875 * 119.85576 * 180.29608 * 5 4 2
7 7 F 1.35093 * 119.85935 * 179.70376 * 6 5 4
8 8 C 1.38810 * 120.28579 * 359.68005 * 6 5 4
9 9 C 1.38051 * 120.43007 * 0.02562 * 8 6 5
10 10 C 1.38668 * 120.14142 * 0.02763 * 9 8 6
11 11 O 1.35640 * 120.14557 * 179.97438 * 10 9 8
12 12 C 1.42901 * 117.00251 * 354.50837 * 11 10 9
13 13 H 1.08999 * 109.46906 * 324.94889 * 12 11 10
14 14 C 1.53002 * 109.46916 * 84.94832 * 12 11 10
15 15 C 1.53000 * 109.47248 * 204.95200 * 12 11 10
16 16 C 1.50693 * 109.47449 * 64.99853 * 15 12 11
17 17 H 1.08005 * 119.99857 * 359.97438 * 16 15 12
18 18 C 1.37879 * 120.00200 * 179.72429 * 16 15 12
19 19 N 1.31513 * 120.00134 * 180.27702 * 18 16 15
20 20 Si 1.86793 * 119.99919 * 0.27644 * 18 16 15
21 21 H 1.48503 * 109.47101 * 89.99897 * 20 18 16
22 22 H 1.48499 * 109.47563 * 209.99968 * 20 18 16
23 23 H 1.48499 * 109.47135 * 330.00191 * 20 18 16
24 24 H 1.09000 * 109.47429 * 269.99753 * 1 2 3
25 25 H 1.08997 * 109.47132 * 30.00451 * 1 2 3
26 26 H 1.08997 * 109.46979 * 150.00100 * 1 2 3
27 27 H 1.08003 * 120.07257 * 0.02562 * 5 4 2
28 28 H 1.07996 * 119.78329 * 180.02562 * 8 6 5
29 29 H 1.08001 * 119.93196 * 179.97438 * 9 8 6
30 30 H 1.09004 * 109.46586 * 60.00314 * 14 12 11
31 31 H 1.08999 * 109.47044 * 180.02562 * 14 12 11
32 32 H 1.08996 * 109.46822 * 300.00464 * 14 12 11
33 33 H 1.09001 * 109.46649 * 304.99779 * 15 12 11
34 34 H 1.08997 * 109.46974 * 184.99950 * 15 12 11
35 35 H 0.96994 * 120.00243 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0506 0.0000
4 6 2.2409 -1.2711 0.0006
5 6 1.5453 -2.4864 -0.0047
6 6 2.2421 -3.6762 0.0020
7 9 1.5711 -4.8486 0.0030
8 6 3.6302 -3.6744 0.0074
9 6 4.3279 -2.4832 0.0065
10 6 3.6451 -1.2763 0.0008
11 8 4.3306 -0.1058 0.0005
12 6 5.7516 -0.1861 0.1280
13 1 6.0111 -1.0154 0.7861
14 6 6.3752 -0.4145 -1.2504
15 6 6.2853 1.1203 0.7191
16 6 5.7676 1.2840 2.1248
17 1 5.1220 0.5318 2.5536
18 6 6.1221 2.3917 2.8655
19 7 5.6747 2.5319 4.0942
20 14 7.2380 3.6931 2.1236
21 1 6.4129 4.7218 1.4408
22 1 8.0360 4.3331 3.2001
23 1 8.1522 3.0591 1.1401
24 1 -0.3634 0.0000 1.0276
25 1 -0.3633 0.8899 -0.5139
26 1 -0.3633 -0.8900 -0.5138
27 1 0.4653 -2.4919 -0.0097
28 1 4.1678 -4.6110 0.0122
29 1 5.4079 -2.4912 0.0111
30 1 6.1156 0.4148 -1.9084
31 1 7.4591 -0.4762 -1.1531
32 1 5.9949 -1.3452 -1.6715
33 1 5.9504 1.9588 0.1086
34 1 7.3748 1.0939 0.7340
35 1 5.9238 3.3113 4.6150
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000829179770.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:09:03
Heat of formation + Delta-G solvation = -119.682297 kcal
Electronic energy + Delta-G solvation = -20139.934608 eV
Core-core repulsion = 16824.173626 eV
Total energy + Delta-G solvation = -3315.760982 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 266.110 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-49.80876 -41.58367 -39.81927 -38.34344 -35.42767 -33.70776 -33.15711 -30.50625
-30.15065 -29.78284 -25.23910 -25.11356 -23.68034 -21.79630 -21.01536 -19.26492
-18.92659 -18.22195 -17.79647 -16.73416 -16.48994 -16.25767 -16.18501 -15.92640
-15.63862 -15.54855 -15.24164 -14.68742 -14.25172 -13.97717 -13.82512 -13.63163
-13.50343 -13.12332 -13.00100 -12.84976 -12.69814 -12.53726 -12.24412 -11.89460
-11.73399 -11.45043 -11.26252 -10.79076 -10.60304 -10.25880 -9.10373 -8.29901
-6.33085 -0.43749 0.17612 1.32920 1.36516 1.41835 1.46192 2.27002
2.34775 2.59269 3.03301 3.06676 3.30008 3.62599 3.79082 3.92972
4.06638 4.16238 4.22853 4.31278 4.39954 4.53433 4.66695 4.74142
4.77476 4.86235 4.92878 4.99428 5.01351 5.10818 5.19326 5.26256
5.34132 5.59708 5.69518 6.21406 6.52055 6.70749 6.72909 7.28744
8.87737
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.021588 B = 0.005822 C = 0.005241
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.735137 B = 4808.315416 C = 5341.292604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.377 3.623
3 O -0.487 6.487
4 C -0.215 4.215
5 C -0.054 4.054
6 C 0.030 3.970
7 F -0.138 7.138
8 C -0.068 4.068
9 C -0.206 4.206
10 C 0.159 3.841
11 O -0.292 6.292
12 C 0.085 3.915
13 H 0.071 0.929
14 C -0.168 4.168
15 C -0.010 4.010
16 C -0.518 4.518
17 H 0.022 0.978
18 C 0.001 3.999
19 N -0.953 5.953
20 Si 0.952 3.048
21 H -0.277 1.277
22 H -0.280 1.280
23 H -0.235 1.235
24 H 0.109 0.891
25 H 0.089 0.911
26 H 0.119 0.881
27 H 0.184 0.816
28 H 0.171 0.829
29 H 0.157 0.843
30 H 0.059 0.941
31 H 0.093 0.907
32 H 0.075 0.925
33 H 0.017 0.983
34 H 0.057 0.943
35 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.400 -13.470 -12.510 19.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C 0.256 3.744
3 O -0.365 6.365
4 C -0.216 4.216
5 C -0.073 4.073
6 C 0.011 3.989
7 F -0.117 7.117
8 C -0.087 4.087
9 C -0.225 4.225
10 C 0.110 3.890
11 O -0.204 6.204
12 C 0.030 3.970
13 H 0.089 0.911
14 C -0.225 4.225
15 C -0.047 4.047
16 C -0.556 4.556
17 H 0.040 0.960
18 C -0.195 4.195
19 N -0.594 5.594
20 Si 0.775 3.225
21 H -0.203 1.203
22 H -0.206 1.206
23 H -0.158 1.158
24 H 0.127 0.873
25 H 0.108 0.892
26 H 0.137 0.863
27 H 0.201 0.799
28 H 0.188 0.812
29 H 0.174 0.826
30 H 0.078 0.922
31 H 0.112 0.888
32 H 0.094 0.906
33 H 0.035 0.965
34 H 0.075 0.925
35 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -6.152 -12.643 -12.388 18.739
hybrid contribution 0.378 0.537 0.474 0.810
sum -5.774 -12.106 -11.914 17.940
Atomic orbital electron populations
1.22241 0.89760 1.06410 1.05994 1.23016 0.93690 0.86777 0.70868
1.90690 1.73289 1.35399 1.37079 1.20066 0.90832 0.96463 1.14277
1.21457 1.02242 0.88268 0.95318 1.17395 0.90363 0.81383 1.09752
1.91497 1.80312 1.45236 1.94669 1.21435 0.92430 0.99633 0.95174
1.21400 1.01991 0.90605 1.08468 1.19981 0.92036 0.86566 0.90400
1.86408 1.21904 1.27650 1.84415 1.22687 0.76954 0.99808 0.97600
0.91121 1.22359 1.02450 1.02740 0.94993 1.19689 0.97056 0.93715
0.94221 1.21236 1.29186 1.06792 0.98418 0.95965 1.26030 0.97921
1.00514 0.95073 1.70074 1.47545 1.30493 1.11304 0.85645 0.79301
0.78813 0.78787 1.20252 1.20556 1.15794 0.87296 0.89200 0.86280
0.79933 0.81156 0.82597 0.92217 0.88825 0.90636 0.96478 0.92457
0.92595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.85 9.76 71.23 0.70 -3.15 16
2 C 0.38 12.85 7.21 27.92 0.20 13.05 16
3 O -0.49 -22.80 15.91 17.86 0.28 -22.52 16
4 C -0.21 -6.84 5.88 -20.08 -0.12 -6.95 16
5 C -0.05 -1.24 9.33 22.62 0.21 -1.03 16
6 C 0.03 0.69 7.28 22.32 0.16 0.85 16
7 F -0.14 -2.95 17.26 44.97 0.78 -2.18 16
8 C -0.07 -1.52 10.01 22.36 0.22 -1.30 16
9 C -0.21 -5.81 8.23 22.33 0.18 -5.62 16
10 C 0.16 5.78 6.62 22.90 0.15 5.93 16
11 O -0.29 -13.03 7.62 -68.58 -0.52 -13.55 16
12 C 0.08 3.39 2.17 30.59 0.07 3.46 16
13 H 0.07 2.72 6.31 -2.39 -0.02 2.70 16
14 C -0.17 -4.89 9.17 71.98 0.66 -4.23 16
15 C -0.01 -0.47 3.75 29.85 0.11 -0.36 16
16 C -0.52 -31.47 9.43 25.60 0.24 -31.23 16
17 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16
18 C 0.00 0.04 5.47 84.66 0.46 0.51 16
19 N -0.95 -62.54 13.96 21.45 0.30 -62.24 16
20 Si 0.95 45.91 27.47 68.60 1.88 47.80 16
21 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
23 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16
24 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16
25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
26 H 0.12 1.47 6.45 -2.39 -0.02 1.46 16
27 H 0.18 2.64 6.35 -2.91 -0.02 2.63 16
28 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16
29 H 0.16 3.94 5.42 -2.91 -0.02 3.93 16
30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16
32 H 0.07 1.84 6.91 -2.39 -0.02 1.82 16
33 H 0.02 0.85 7.58 -2.39 -0.02 0.83 16
34 H 0.06 2.53 7.19 -2.39 -0.02 2.51 16
35 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16
Total: -1.00 -81.02 300.42 7.03 -73.99
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: 1.05 Total: 8.77 kcal
Atomic # 6 Polarization: -33.33 SS G_CDS: 3.25 Total: -30.07 kcal
Atomic # 7 Polarization: -62.54 SS G_CDS: 0.30 Total: -62.24 kcal
Atomic # 8 Polarization: -35.83 SS G_CDS: -0.24 Total: -36.07 kcal
Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal
Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal
Total: -81.02 7.03 -73.99 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829179770.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.694 kcal
(2) G-P(sol) polarization free energy of solvation -81.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.682 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds