Wall clock time and date at job start Mon Mar 30 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21322 * 119.99982 * 2 1 4 4 C 1.46675 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.40111 * 120.14079 * 0.02562 * 4 2 1 6 6 C 1.36495 * 120.03336 * 180.02562 * 5 4 2 7 7 C 1.39172 * 120.32049 * 359.97438 * 6 5 4 8 8 O 1.35658 * 119.86113 * 180.02562 * 7 6 5 9 9 C 1.42906 * 117.00140 * 185.45310 * 8 7 6 10 10 H 1.08994 * 109.46874 * 35.13709 * 9 8 7 11 11 C 1.52997 * 109.46858 * 275.13578 * 9 8 7 12 12 C 1.53000 * 109.47065 * 155.13918 * 9 8 7 13 13 C 1.50705 * 109.47035 * 294.99295 * 12 9 8 14 14 H 1.07999 * 119.99595 * 0.02562 * 13 12 9 15 15 C 1.37882 * 119.99847 * 179.97438 * 13 12 9 16 16 N 1.31515 * 119.99828 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99857 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47337 * 90.00035 * 17 15 13 19 19 H 1.48494 * 109.47139 * 210.00471 * 17 15 13 20 20 H 1.48505 * 109.46854 * 330.00141 * 17 15 13 21 21 C 1.38915 * 120.28021 * 359.97438 * 7 6 5 22 22 C 1.38008 * 119.96512 * 0.02830 * 21 7 6 23 23 F 1.35097 * 120.16360 * 180.02562 * 22 21 7 24 24 H 1.08998 * 109.47388 * 270.00179 * 1 2 3 25 25 H 1.09000 * 109.47218 * 30.00350 * 1 2 3 26 26 H 1.08997 * 109.47155 * 150.00199 * 1 2 3 27 27 H 1.08006 * 119.98058 * 0.04135 * 5 4 2 28 28 H 1.07998 * 119.84089 * 180.27606 * 6 5 4 29 29 H 1.08998 * 109.47285 * 300.00239 * 11 9 8 30 30 H 1.08999 * 109.47158 * 59.99824 * 11 9 8 31 31 H 1.09005 * 109.47002 * 179.97438 * 11 9 8 32 32 H 1.08992 * 109.47618 * 54.99764 * 12 9 8 33 33 H 1.09004 * 109.46940 * 175.00178 * 12 9 8 34 34 H 0.97004 * 119.99474 * 179.97438 * 16 15 13 35 35 H 1.08007 * 120.01918 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2404 -1.2702 0.0006 5 6 1.5428 -2.4854 0.0006 6 6 2.2276 -3.6661 0.0016 7 6 3.6193 -3.6713 0.0022 8 8 4.2904 -4.8502 0.0027 9 6 5.7128 -4.7870 0.1242 10 1 5.9850 -3.9600 0.7799 11 6 6.3334 -4.5684 -1.2570 12 6 6.2330 -6.0990 0.7152 13 6 5.7192 -6.2542 2.1234 14 1 5.0847 -5.4934 2.5536 15 6 6.0582 -7.3680 2.8620 16 7 6.8304 -8.2946 2.3378 17 14 5.4208 -7.5608 4.6072 18 1 4.1211 -8.2789 4.5831 19 1 6.4003 -8.3370 5.4091 20 1 5.2340 -6.2196 5.2170 21 6 4.3241 -2.4742 0.0011 22 6 3.6437 -1.2736 0.0001 23 9 4.3251 -0.1071 -0.0015 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4628 -2.4877 -0.0005 28 1 1.6868 -4.6010 -0.0029 29 1 6.0612 -5.3954 -1.9127 30 1 5.9628 -3.6338 -1.6781 31 1 7.4184 -4.5197 -1.1643 32 1 5.8854 -6.9343 0.1074 33 1 7.3229 -6.0859 0.7255 34 1 7.0692 -9.0780 2.8577 35 1 5.4042 -2.4832 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:06 Heat of formation + Delta-G solvation = -107.552333 kcal Electronic energy + Delta-G solvation = -19711.382109 eV Core-core repulsion = 16396.147122 eV Total energy + Delta-G solvation = -3315.234987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.85600 -40.21355 -39.15619 -37.07808 -33.64528 -31.90880 -31.58503 -30.32268 -28.90765 -27.58186 -24.15343 -23.11840 -22.80132 -20.56161 -19.86898 -18.36336 -16.71526 -16.55697 -16.47658 -15.99413 -15.77618 -14.86847 -14.74948 -14.62825 -14.52605 -14.24922 -13.90907 -13.36998 -13.02167 -12.50924 -12.36895 -12.20586 -12.10441 -11.94140 -11.86457 -11.52781 -11.28928 -11.00454 -10.82753 -10.52414 -10.19436 -9.75785 -9.55711 -9.23980 -8.97199 -8.47713 -8.12841 -6.10732 -4.13222 0.65571 1.19631 2.38670 3.27349 3.33856 3.37302 3.49725 3.66771 3.98427 4.18239 4.38553 4.61435 4.90520 4.99566 5.10007 5.21026 5.24767 5.26595 5.43843 5.45537 5.57082 5.65768 5.78836 5.98073 6.01315 6.04264 6.13972 6.25541 6.46700 6.56435 6.65641 7.32968 7.43439 7.50150 7.81954 7.84862 8.23232 8.90038 9.51069 11.00489 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.004675 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.745901 B = 5987.406683 C = 6464.056906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.397 3.603 3 O -0.463 6.463 4 C -0.273 4.273 5 C -0.008 4.008 6 C -0.184 4.184 7 C 0.219 3.781 8 O -0.275 6.275 9 C 0.080 3.920 10 H 0.068 0.932 11 C -0.179 4.179 12 C 0.026 3.974 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.275 4.275 22 C 0.202 3.798 23 F -0.119 7.119 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.506 10.845 -6.390 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.276 3.724 3 O -0.340 6.340 4 C -0.275 4.275 5 C -0.026 4.026 6 C -0.203 4.203 7 C 0.168 3.832 8 O -0.186 6.186 9 C 0.025 3.975 10 H 0.086 0.914 11 C -0.237 4.237 12 C -0.011 4.011 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.295 4.295 22 C 0.182 3.818 23 F -0.097 7.097 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.117 11.047 -6.367 16.277 hybrid contribution 0.053 -0.039 1.015 1.017 sum -10.064 11.009 -5.353 15.847 Atomic orbital electron populations 1.22199 0.93784 1.04706 1.04683 1.22134 0.91600 0.87251 0.71367 1.90591 1.72039 1.34171 1.37233 1.20325 0.92160 0.96354 1.18658 1.20803 0.99961 0.89797 0.92022 1.20278 0.91200 0.99621 1.09193 1.19319 0.92028 0.85350 0.86462 1.86300 1.23173 1.25572 1.83511 1.23100 0.75362 1.03530 0.95462 0.91423 1.22433 1.01708 1.01638 0.97898 1.19292 0.96483 0.89258 0.96046 1.21098 1.30774 1.05855 0.98054 0.92588 1.24971 0.95027 0.95748 0.98439 1.69944 1.36127 1.09967 1.37333 0.86567 0.78719 0.78231 0.84381 1.20518 1.21155 1.19856 1.21339 1.02106 0.90904 1.15110 1.17614 0.88806 0.81099 0.94311 1.91560 1.79587 1.46063 1.92491 0.88545 0.89606 0.89536 0.83813 0.83859 0.91578 0.93158 0.90924 0.95063 0.94031 0.92811 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 9.75 36.00 0.35 -1.17 16 2 C 0.40 5.07 7.21 -30.91 -0.22 4.85 16 3 O -0.46 -7.69 16.08 5.52 0.09 -7.60 16 4 C -0.27 -3.67 5.88 -105.00 -0.62 -4.29 16 5 C -0.01 -0.08 9.30 -39.51 -0.37 -0.45 16 6 C -0.18 -2.46 9.91 -39.86 -0.40 -2.86 16 7 C 0.22 3.57 6.61 -38.98 -0.26 3.31 16 8 O -0.28 -5.30 9.54 -18.67 -0.18 -5.47 16 9 C 0.08 1.55 2.17 -26.73 -0.06 1.50 16 10 H 0.07 1.28 6.30 -51.93 -0.33 0.96 16 11 C -0.18 -2.83 9.16 37.16 0.34 -2.49 16 12 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 13 C -0.52 -14.09 8.88 -34.44 -0.31 -14.40 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.28 -4.34 8.19 -39.42 -0.32 -4.66 16 22 C 0.20 3.16 7.29 -38.88 -0.28 2.88 16 23 F -0.12 -2.02 15.55 2.25 0.04 -1.99 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.47 6.45 -51.93 -0.34 0.14 16 27 H 0.14 1.00 6.34 -52.48 -0.33 0.67 16 28 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.71 6.89 -51.93 -0.36 0.35 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.15 2.29 5.39 -52.48 -0.28 2.01 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -31.39 304.14 -6.26 -37.65 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.14 Total: -2.48 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -2.37 Total: -15.73 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.15 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.09 Total: -13.08 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.39 -6.26 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.901 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds