Wall clock time and date at job start Mon Mar 30 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21322 * 119.99982 * 2 1 4 4 C 1.46675 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.40111 * 120.14079 * 0.02562 * 4 2 1 6 6 C 1.36495 * 120.03336 * 180.02562 * 5 4 2 7 7 C 1.39172 * 120.32049 * 359.97438 * 6 5 4 8 8 O 1.35658 * 119.86113 * 180.02562 * 7 6 5 9 9 C 1.42906 * 117.00140 * 185.45310 * 8 7 6 10 10 H 1.08994 * 109.46874 * 35.13709 * 9 8 7 11 11 C 1.52997 * 109.46858 * 275.13578 * 9 8 7 12 12 C 1.53000 * 109.47065 * 155.13918 * 9 8 7 13 13 C 1.50705 * 109.47035 * 294.99295 * 12 9 8 14 14 H 1.07999 * 119.99595 * 0.02562 * 13 12 9 15 15 C 1.37882 * 119.99847 * 179.97438 * 13 12 9 16 16 N 1.31515 * 119.99828 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99857 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47337 * 90.00035 * 17 15 13 19 19 H 1.48494 * 109.47139 * 210.00471 * 17 15 13 20 20 H 1.48505 * 109.46854 * 330.00141 * 17 15 13 21 21 C 1.38915 * 120.28021 * 359.97438 * 7 6 5 22 22 C 1.38008 * 119.96512 * 0.02830 * 21 7 6 23 23 F 1.35097 * 120.16360 * 180.02562 * 22 21 7 24 24 H 1.08998 * 109.47388 * 270.00179 * 1 2 3 25 25 H 1.09000 * 109.47218 * 30.00350 * 1 2 3 26 26 H 1.08997 * 109.47155 * 150.00199 * 1 2 3 27 27 H 1.08006 * 119.98058 * 0.04135 * 5 4 2 28 28 H 1.07998 * 119.84089 * 180.27606 * 6 5 4 29 29 H 1.08998 * 109.47285 * 300.00239 * 11 9 8 30 30 H 1.08999 * 109.47158 * 59.99824 * 11 9 8 31 31 H 1.09005 * 109.47002 * 179.97438 * 11 9 8 32 32 H 1.08992 * 109.47618 * 54.99764 * 12 9 8 33 33 H 1.09004 * 109.46940 * 175.00178 * 12 9 8 34 34 H 0.97004 * 119.99474 * 179.97438 * 16 15 13 35 35 H 1.08007 * 120.01918 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2404 -1.2702 0.0006 5 6 1.5428 -2.4854 0.0006 6 6 2.2276 -3.6661 0.0016 7 6 3.6193 -3.6713 0.0022 8 8 4.2904 -4.8502 0.0027 9 6 5.7128 -4.7870 0.1242 10 1 5.9850 -3.9600 0.7799 11 6 6.3334 -4.5684 -1.2570 12 6 6.2330 -6.0990 0.7152 13 6 5.7192 -6.2542 2.1234 14 1 5.0847 -5.4934 2.5536 15 6 6.0582 -7.3680 2.8620 16 7 6.8304 -8.2946 2.3378 17 14 5.4208 -7.5608 4.6072 18 1 4.1211 -8.2789 4.5831 19 1 6.4003 -8.3370 5.4091 20 1 5.2340 -6.2196 5.2170 21 6 4.3241 -2.4742 0.0011 22 6 3.6437 -1.2736 0.0001 23 9 4.3251 -0.1071 -0.0015 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4628 -2.4877 -0.0005 28 1 1.6868 -4.6010 -0.0029 29 1 6.0612 -5.3954 -1.9127 30 1 5.9628 -3.6338 -1.6781 31 1 7.4184 -4.5197 -1.1643 32 1 5.8854 -6.9343 0.1074 33 1 7.3229 -6.0859 0.7255 34 1 7.0692 -9.0780 2.8577 35 1 5.4042 -2.4832 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:06 Heat of formation + Delta-G solvation = -125.937393 kcal Electronic energy + Delta-G solvation = -19712.179345 eV Core-core repulsion = 16396.147122 eV Total energy + Delta-G solvation = -3316.032223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.09755 -41.43237 -40.29707 -38.29882 -35.50556 -33.58679 -32.64919 -31.44434 -29.82356 -29.37020 -25.57777 -24.73396 -23.93850 -21.97329 -20.96819 -19.64501 -18.56135 -17.94467 -17.59251 -17.23105 -16.98465 -16.59885 -16.06811 -15.75048 -15.70498 -15.31803 -15.29818 -14.55806 -14.48565 -13.87373 -13.67839 -13.51930 -13.35819 -13.13515 -12.98373 -12.91516 -12.70252 -12.64780 -12.40011 -12.16810 -11.81429 -11.39680 -11.13075 -10.77641 -10.59685 -10.09682 -9.34328 -8.22301 -6.31755 -0.44785 0.10189 1.35966 1.40078 1.40217 1.51119 2.19703 2.39791 2.57715 2.98705 3.11864 3.12903 3.57320 3.81229 3.97905 4.07097 4.14119 4.14971 4.32286 4.43418 4.59067 4.72248 4.75428 4.87104 4.88947 4.99049 5.05929 5.13472 5.16570 5.29650 5.33842 5.42693 5.63539 5.74336 6.14844 6.42244 6.55031 6.79740 7.36420 8.89272 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.004675 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.745901 B = 5987.406683 C = 6464.056906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.395 3.605 3 O -0.510 6.510 4 C -0.273 4.273 5 C 0.018 3.982 6 C -0.183 4.183 7 C 0.191 3.809 8 O -0.299 6.299 9 C 0.089 3.911 10 H 0.066 0.934 11 C -0.170 4.170 12 C 0.029 3.971 13 C -0.534 4.534 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.279 4.279 22 C 0.174 3.826 23 F -0.134 7.134 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.199 0.801 28 H 0.162 0.838 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.005 0.995 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 11.432 -6.080 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.278 3.722 3 O -0.390 6.390 4 C -0.275 4.275 5 C 0.001 3.999 6 C -0.201 4.201 7 C 0.142 3.858 8 O -0.211 6.211 9 C 0.034 3.966 10 H 0.084 0.916 11 C -0.227 4.227 12 C -0.008 4.008 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.299 4.299 22 C 0.154 3.846 23 F -0.113 7.113 24 H 0.136 0.864 25 H 0.110 0.890 26 H 0.137 0.863 27 H 0.216 0.784 28 H 0.179 0.821 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.024 0.976 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.083 11.642 -6.066 18.534 hybrid contribution 0.899 -0.167 0.892 1.278 sum -12.184 11.475 -5.174 17.519 Atomic orbital electron populations 1.22258 0.89063 1.06685 1.06520 1.22917 0.93991 0.85927 0.69411 1.90587 1.73491 1.35530 1.39434 1.20783 0.91339 0.98149 1.17192 1.21316 1.02243 0.87544 0.88833 1.20647 0.89924 1.01394 1.08166 1.19639 0.93208 0.84358 0.88588 1.86212 1.22652 1.27393 1.84820 1.22740 0.76335 1.00403 0.97106 0.91629 1.22337 1.02090 1.02481 0.95798 1.19122 0.95592 0.91142 0.94945 1.21453 1.30538 1.05792 0.99443 0.92892 1.25825 0.95246 0.95483 1.02607 1.70058 1.37366 1.10557 1.38981 0.85542 0.78339 0.78371 0.79406 1.19675 1.20634 1.19244 1.21293 1.02016 0.91128 1.15458 1.17955 0.90114 0.80532 0.96022 1.91517 1.80106 1.46764 1.92867 0.86418 0.88986 0.86289 0.78402 0.82090 0.91652 0.91330 0.89967 0.97624 0.95613 0.92641 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 9.75 71.23 0.69 -1.33 16 2 C 0.40 9.11 7.21 27.89 0.20 9.31 16 3 O -0.51 -16.59 16.08 -3.16 -0.05 -16.64 16 4 C -0.27 -6.70 5.88 -20.11 -0.12 -6.81 16 5 C 0.02 0.33 9.30 22.32 0.21 0.53 16 6 C -0.18 -4.39 9.91 22.09 0.22 -4.17 16 7 C 0.19 6.11 6.61 22.66 0.15 6.26 16 8 O -0.30 -11.61 9.54 -89.74 -0.86 -12.47 16 9 C 0.09 3.54 2.17 30.59 0.07 3.61 16 10 H 0.07 2.58 6.30 -2.39 -0.02 2.56 16 11 C -0.17 -5.39 9.16 71.98 0.66 -4.73 16 12 C 0.03 1.45 4.68 29.85 0.14 1.59 16 13 C -0.53 -29.57 8.88 25.60 0.23 -29.34 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 15 C 0.01 0.37 5.46 84.66 0.46 0.83 16 16 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 17 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 C -0.28 -8.86 8.19 22.38 0.18 -8.68 16 22 C 0.17 5.40 7.29 22.72 0.17 5.56 16 23 F -0.13 -4.69 15.55 44.97 0.70 -3.99 16 24 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.12 0.51 6.45 -2.39 -0.02 0.49 16 27 H 0.20 1.37 6.34 -2.91 -0.02 1.36 16 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.07 1.91 6.89 -2.39 -0.02 1.90 16 31 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.14 4.55 5.39 -2.91 -0.02 4.54 16 Total: -1.00 -71.21 304.14 6.47 -64.74 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.11 Total: 4.67 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.26 Total: -27.37 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.28 Total: -54.53 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.91 Total: -29.11 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.70 Total: -3.99 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -71.21 6.47 -64.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.199 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds