Wall clock time and date at job start Mon Mar 30 2020 07:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21318 * 119.99694 * 2 1 4 4 C 1.46677 * 119.99816 * 179.97438 * 2 1 3 5 5 C 1.40110 * 120.14318 * 359.97438 * 4 2 1 6 6 C 1.36489 * 120.03472 * 179.97438 * 5 4 2 7 7 C 1.39187 * 120.31837 * 0.04504 * 6 5 4 8 8 O 1.35664 * 119.85947 * 179.97438 * 7 6 5 9 9 C 1.42896 * 117.00137 * 174.59377 * 8 7 6 10 10 H 1.09007 * 109.46846 * 324.65238 * 9 8 7 11 11 C 1.53001 * 109.47263 * 84.65112 * 9 8 7 12 12 C 1.52998 * 109.47220 * 204.65143 * 9 8 7 13 13 C 1.50702 * 109.47052 * 64.99451 * 12 9 8 14 14 H 1.08007 * 120.00189 * 0.02562 * 13 12 9 15 15 C 1.37880 * 120.00227 * 179.97438 * 13 12 9 16 16 N 1.31518 * 119.99866 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00077 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47004 * 90.00262 * 17 15 13 19 19 H 1.48498 * 109.46837 * 209.99989 * 17 15 13 20 20 H 1.48491 * 109.47360 * 330.00033 * 17 15 13 21 21 C 1.38903 * 120.27856 * 359.95733 * 7 6 5 22 22 C 1.38018 * 119.96834 * 0.02562 * 21 7 6 23 23 F 1.35099 * 120.15668 * 180.02562 * 22 21 7 24 24 H 1.08997 * 109.47418 * 270.00434 * 1 2 3 25 25 H 1.08997 * 109.47113 * 30.00181 * 1 2 3 26 26 H 1.08997 * 109.47191 * 150.00432 * 1 2 3 27 27 H 1.08011 * 119.97951 * 0.02562 * 5 4 2 28 28 H 1.07999 * 119.83878 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46634 * 180.02562 * 11 9 8 30 30 H 1.09002 * 109.47017 * 299.99522 * 11 9 8 31 31 H 1.08994 * 109.47374 * 60.00093 * 11 9 8 32 32 H 1.09003 * 109.47322 * 184.99470 * 12 9 8 33 33 H 1.08997 * 109.47246 * 304.99927 * 12 9 8 34 34 H 0.96999 * 120.00094 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.01633 * 180.29886 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2403 -1.2703 0.0006 5 6 1.5428 -2.4854 0.0017 6 6 2.2274 -3.6662 0.0017 7 6 3.6193 -3.6713 0.0015 8 8 4.2904 -4.8503 0.0020 9 6 5.7129 -4.7872 -0.1181 10 1 5.9856 -3.9626 -0.7768 11 6 6.3319 -4.5629 1.2630 12 6 6.2341 -6.1013 -0.7032 13 6 5.7217 -6.2624 -2.1112 14 1 5.0881 -5.5032 -2.5456 15 6 6.0627 -7.3785 -2.8455 16 7 6.8356 -8.3023 -2.3172 17 14 5.4282 -7.5779 -4.5911 18 1 6.3911 -6.9647 -5.5408 19 1 5.2787 -9.0223 -4.9014 20 1 4.1106 -6.9052 -4.7187 21 6 4.3241 -2.4743 0.0005 22 6 3.6436 -1.2736 0.0001 23 9 4.3252 -0.1072 -0.0014 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5137 27 1 0.4627 -2.4877 0.0017 28 1 1.6865 -4.6009 0.0021 29 1 7.4170 -4.5143 1.1712 30 1 5.9606 -3.6266 1.6798 31 1 6.0592 -5.3873 1.9217 32 1 7.3240 -6.0880 -0.7124 33 1 5.8861 -6.9343 -0.0924 34 1 7.0752 -9.0876 -2.8336 35 1 5.4040 -2.4833 -0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:08 Heat of formation + Delta-G solvation = -125.921444 kcal Electronic energy + Delta-G solvation = -19711.907599 eV Core-core repulsion = 16395.876068 eV Total energy + Delta-G solvation = -3316.031532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.09706 -41.43287 -40.29776 -38.29934 -35.50519 -33.58570 -32.64959 -31.44443 -29.82476 -29.36934 -25.57821 -24.73370 -23.93814 -21.97355 -20.96829 -19.64467 -18.56114 -17.94462 -17.59246 -17.23048 -16.98696 -16.59793 -16.07017 -15.74859 -15.70568 -15.31848 -15.29709 -14.55522 -14.48723 -13.87578 -13.68842 -13.51318 -13.35805 -13.10404 -12.99383 -12.93542 -12.69245 -12.65994 -12.39568 -12.16098 -11.82411 -11.38975 -11.12997 -10.77648 -10.59830 -10.09714 -9.34376 -8.22250 -6.31725 -0.44783 0.10143 1.35819 1.39972 1.40215 1.51435 2.19968 2.39848 2.57518 2.98653 3.11834 3.12947 3.57297 3.81200 3.97881 4.07014 4.14021 4.14957 4.32263 4.43432 4.58871 4.72357 4.75470 4.87054 4.88863 4.99044 5.05896 5.13497 5.16513 5.29664 5.33817 5.42721 5.63484 5.74346 6.14838 6.42309 6.55018 6.79763 7.36460 8.89318 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.004670 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.310672 B = 5994.285893 C = 6469.344452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.395 3.605 3 O -0.510 6.510 4 C -0.272 4.272 5 C 0.018 3.982 6 C -0.183 4.183 7 C 0.191 3.809 8 O -0.299 6.299 9 C 0.089 3.911 10 H 0.066 0.934 11 C -0.170 4.170 12 C 0.029 3.971 13 C -0.534 4.534 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.958 3.042 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.279 4.279 22 C 0.174 3.826 23 F -0.134 7.134 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.199 0.801 28 H 0.161 0.839 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.005 0.995 34 H 0.265 0.735 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 11.480 6.171 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.278 3.722 3 O -0.390 6.390 4 C -0.275 4.275 5 C 0.001 3.999 6 C -0.202 4.202 7 C 0.142 3.858 8 O -0.211 6.211 9 C 0.034 3.966 10 H 0.084 0.916 11 C -0.227 4.227 12 C -0.008 4.008 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.299 4.299 22 C 0.154 3.846 23 F -0.112 7.112 24 H 0.139 0.861 25 H 0.109 0.891 26 H 0.135 0.865 27 H 0.216 0.784 28 H 0.179 0.821 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.082 11.687 6.154 18.590 hybrid contribution 0.911 -0.169 -0.892 1.286 sum -12.171 11.517 5.262 17.563 Atomic orbital electron populations 1.22257 0.89069 1.06575 1.06622 1.22915 0.93988 0.85925 0.69414 1.90586 1.73491 1.35521 1.39435 1.20781 0.91344 0.98142 1.17190 1.21314 1.02241 0.87547 0.88841 1.20648 0.89937 1.01390 1.08176 1.19641 0.93202 0.84367 0.88585 1.86213 1.22646 1.27395 1.84826 1.22740 0.76331 1.00396 0.97119 0.91617 1.22339 1.02100 1.02467 0.95809 1.19120 0.95579 0.91123 0.94976 1.21453 1.30582 1.05727 0.99453 0.92889 1.25826 0.95261 0.95492 1.02585 1.70056 1.37373 1.10588 1.38954 0.85544 0.79043 0.77449 0.79651 1.19913 1.20553 1.19059 1.21291 1.02019 0.91115 1.15458 1.17955 0.90107 0.80535 0.96012 1.91518 1.80091 1.46768 1.92865 0.86111 0.89117 0.86471 0.78412 0.82118 0.89968 0.91323 0.91656 0.95619 0.97618 0.92642 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 9.75 71.24 0.69 -1.33 16 2 C 0.40 9.10 7.21 27.89 0.20 9.31 16 3 O -0.51 -16.58 16.08 -3.15 -0.05 -16.63 16 4 C -0.27 -6.70 5.88 -20.11 -0.12 -6.82 16 5 C 0.02 0.33 9.30 22.32 0.21 0.53 16 6 C -0.18 -4.41 9.91 22.09 0.22 -4.19 16 7 C 0.19 6.11 6.61 22.66 0.15 6.26 16 8 O -0.30 -11.63 9.54 -89.81 -0.86 -12.49 16 9 C 0.09 3.54 2.17 30.59 0.07 3.61 16 10 H 0.07 2.58 6.31 -2.38 -0.02 2.56 16 11 C -0.17 -5.39 9.16 71.98 0.66 -4.73 16 12 C 0.03 1.45 4.68 29.85 0.14 1.59 16 13 C -0.53 -29.56 8.88 25.60 0.23 -29.33 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 15 C 0.01 0.37 5.46 84.65 0.46 0.83 16 16 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 17 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 C -0.28 -8.85 8.18 22.38 0.18 -8.67 16 22 C 0.17 5.40 7.29 22.73 0.17 5.56 16 23 F -0.13 -4.68 15.55 44.97 0.70 -3.98 16 24 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.12 0.56 6.46 -2.39 -0.02 0.54 16 27 H 0.20 1.39 6.34 -2.90 -0.02 1.37 16 28 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 1.91 6.87 -2.39 -0.02 1.90 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.14 4.55 5.39 -2.91 -0.02 4.54 16 Total: -1.00 -71.18 304.12 6.47 -64.72 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.11 Total: 4.71 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.26 Total: -27.37 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.28 Total: -54.54 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.91 Total: -29.11 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.70 Total: -3.98 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.18 6.47 -64.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.206 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds