Wall clock time and date at job start Mon Mar 30 2020 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21295 * 120.00003 * 2 1 4 4 C 1.46856 * 120.00531 * 179.97438 * 2 1 3 5 5 C 1.40024 * 120.11123 * 179.97438 * 4 2 1 6 6 C 1.37627 * 119.92565 * 179.97438 * 5 4 2 7 7 C 1.39013 * 120.14342 * 0.02562 * 6 5 4 8 8 O 1.35707 * 119.89167 * 179.97438 * 7 6 5 9 9 C 1.42892 * 117.00155 * 354.52971 * 8 7 6 10 10 H 1.08996 * 109.47457 * 324.88896 * 9 8 7 11 11 C 1.52997 * 109.47083 * 84.89277 * 9 8 7 12 12 C 1.52999 * 109.47218 * 204.88855 * 9 8 7 13 13 C 1.50702 * 109.47030 * 65.00614 * 12 9 8 14 14 H 1.08006 * 120.00138 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99918 * 179.72504 * 13 12 9 16 16 N 1.31508 * 120.00337 * 0.26893 * 15 13 12 17 17 Si 1.86804 * 119.99845 * 180.27045 * 15 13 12 18 18 H 1.48500 * 109.46936 * 89.99892 * 17 15 13 19 19 H 1.48498 * 109.47085 * 209.99755 * 17 15 13 20 20 H 1.48501 * 109.47060 * 329.99937 * 17 15 13 21 21 C 1.39254 * 120.21509 * 0.26786 * 7 6 5 22 22 F 1.35101 * 119.96588 * 179.70708 * 21 7 6 23 23 C 1.37786 * 120.07482 * 359.45003 * 21 7 6 24 24 H 1.09002 * 109.47018 * 239.99848 * 1 2 3 25 25 H 1.09000 * 109.47453 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47102 * 120.00287 * 1 2 3 27 27 H 1.07999 * 120.03649 * 359.96182 * 5 4 2 28 28 H 1.07999 * 119.92931 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.47423 * 59.99896 * 11 9 8 30 30 H 1.09000 * 109.47214 * 180.02562 * 11 9 8 31 31 H 1.09007 * 109.47209 * 300.00102 * 11 9 8 32 32 H 1.08993 * 109.47639 * 305.00304 * 12 9 8 33 33 H 1.09000 * 109.47316 * 184.99905 * 12 9 8 34 34 H 0.97002 * 120.00121 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.07619 * 180.29112 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2717 0.0006 5 6 3.6416 -1.2743 0.0000 6 6 4.3259 -2.4684 0.0011 7 6 3.6301 -3.6718 0.0022 8 8 4.3101 -4.8462 0.0027 9 6 5.7319 -4.7727 -0.1193 10 1 5.9980 -3.9441 -0.7755 11 6 6.3513 -4.5488 1.2617 12 6 6.2615 -6.0811 -0.7096 13 6 5.7485 -6.2409 -2.1175 14 1 5.1083 -5.4851 -2.5481 15 6 6.1005 -7.3495 -2.8579 16 7 6.8796 -8.2701 -2.3335 17 14 5.4706 -7.5439 -4.6057 18 1 6.4297 -6.9165 -5.5501 19 1 5.3343 -8.9877 -4.9250 20 1 4.1473 -6.8820 -4.7315 21 6 2.2376 -3.6761 -0.0034 22 9 1.5664 -4.8487 -0.0084 23 6 1.5434 -2.4860 0.0013 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 4.1839 -0.3404 -0.0014 28 1 5.4059 -2.4704 0.0003 29 1 6.0853 -5.3774 1.9180 30 1 7.4359 -4.4922 1.1686 31 1 5.9740 -3.6166 1.6823 32 1 5.9203 -6.9186 -0.1013 33 1 7.3513 -6.0601 -0.7203 34 1 7.1270 -9.0502 -2.8543 35 1 0.4634 -2.4893 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:14 Heat of formation + Delta-G solvation = -108.142648 kcal Electronic energy + Delta-G solvation = -19719.331125 eV Core-core repulsion = 16404.070540 eV Total energy + Delta-G solvation = -3315.260585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.55892 -40.24152 -39.21915 -37.06420 -33.63944 -31.88387 -31.67046 -30.16738 -28.94641 -27.56911 -24.22380 -23.15178 -22.80017 -20.64705 -19.73823 -18.20165 -16.93655 -16.63319 -16.44844 -15.68743 -15.66950 -15.00020 -14.81428 -14.65856 -14.59782 -14.23547 -13.96955 -13.00075 -12.80078 -12.55368 -12.43994 -12.25111 -12.07930 -12.04001 -11.91506 -11.51433 -11.30653 -11.00179 -10.81202 -10.51301 -10.20984 -9.87598 -9.53277 -9.21774 -8.98646 -8.45211 -8.01192 -6.08142 -4.10397 0.61197 1.15227 2.30764 3.29014 3.35711 3.40454 3.44571 3.63986 3.93814 4.31293 4.41192 4.61102 4.90628 4.95317 5.05261 5.18516 5.27738 5.29003 5.40896 5.45408 5.57594 5.65593 5.79271 5.83062 5.99778 6.03065 6.11711 6.26865 6.46873 6.57425 6.63410 7.34072 7.40936 7.45635 7.82552 7.87343 8.25859 8.92518 9.53772 11.03128 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.004846 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.542741 B = 5776.191335 C = 6173.328407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.404 3.596 3 O -0.468 6.468 4 C -0.210 4.210 5 C -0.024 4.024 6 C -0.208 4.208 7 C 0.158 3.842 8 O -0.274 6.274 9 C 0.082 3.918 10 H 0.068 0.932 11 C -0.179 4.179 12 C 0.026 3.974 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.045 3.955 22 F -0.128 7.128 23 C -0.069 4.069 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.138 0.862 28 H 0.147 0.853 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 12.966 6.429 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.283 3.717 3 O -0.345 6.345 4 C -0.211 4.211 5 C -0.042 4.042 6 C -0.227 4.227 7 C 0.108 3.892 8 O -0.185 6.185 9 C 0.027 3.973 10 H 0.086 0.914 11 C -0.236 4.236 12 C -0.011 4.011 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.025 3.975 22 F -0.107 7.107 23 C -0.088 4.088 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.156 0.844 28 H 0.165 0.835 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.968 13.065 6.406 17.093 hybrid contribution -0.264 -0.492 -1.010 1.154 sum -9.232 12.574 5.396 16.506 Atomic orbital electron populations 1.22256 0.93956 1.04989 1.04626 1.22230 0.91487 0.87334 0.70628 1.90535 1.72226 1.34215 1.37498 1.20035 0.94298 0.93900 1.12895 1.21206 0.92868 0.98157 0.91996 1.21294 1.01470 0.90915 1.09038 1.19646 0.90761 0.87545 0.91234 1.86339 1.22958 1.25272 1.83922 1.23100 0.75273 1.03523 0.95422 0.91385 1.22435 1.01636 1.01648 0.97928 1.19291 0.96349 0.89386 0.96073 1.21087 1.30277 1.06367 0.97959 0.92658 1.24962 0.95031 0.95714 0.98457 1.69937 1.35862 1.10399 1.37199 0.86574 0.79395 0.77363 0.84640 1.20603 1.21080 1.19787 1.16840 0.87122 0.82216 1.11316 1.91530 1.79591 1.45154 1.94403 1.21149 1.00500 0.89699 0.97464 0.88834 0.89819 0.88772 0.84403 0.83495 0.91630 0.90900 0.93127 0.95082 0.93988 0.92826 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 8.92 36.00 0.32 -1.15 16 2 C 0.40 4.60 7.22 -30.83 -0.22 4.37 16 3 O -0.47 -6.76 17.07 5.54 0.09 -6.66 16 4 C -0.21 -2.60 5.87 -105.06 -0.62 -3.22 16 5 C -0.02 -0.31 9.59 -39.14 -0.38 -0.69 16 6 C -0.21 -3.05 8.21 -39.52 -0.32 -3.37 16 7 C 0.16 2.74 6.62 -38.92 -0.26 2.48 16 8 O -0.27 -5.64 9.40 -18.83 -0.18 -5.82 16 9 C 0.08 1.60 2.17 -26.73 -0.06 1.55 16 10 H 0.07 1.27 6.30 -51.93 -0.33 0.94 16 11 C -0.18 -2.82 9.16 37.16 0.34 -2.47 16 12 C 0.03 0.64 4.68 -27.88 -0.13 0.50 16 13 C -0.52 -14.39 8.88 -34.44 -0.31 -14.70 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.05 0.72 7.30 -39.37 -0.29 0.43 16 22 F -0.13 -2.26 17.10 2.25 0.04 -2.22 16 23 C -0.07 -0.84 9.44 -39.07 -0.37 -1.21 16 24 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 25 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 26 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.14 1.65 7.64 -52.49 -0.40 1.24 16 28 H 0.15 1.98 5.39 -52.49 -0.28 1.70 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.69 6.89 -51.93 -0.36 0.33 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.15 1.28 7.04 -52.49 -0.37 0.91 16 LS Contribution 307.39 15.07 4.63 4.63 Total: -1.00 -31.58 307.39 -6.31 -37.89 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.23 Total: -2.99 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.38 Total: -15.88 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.08 Total: -12.49 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.58 -6.31 -37.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.256 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds