Wall clock time and date at job start Mon Mar 30 2020 07:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21295 * 120.00003 * 2 1 4 4 C 1.46856 * 120.00531 * 179.97438 * 2 1 3 5 5 C 1.40024 * 120.11123 * 179.97438 * 4 2 1 6 6 C 1.37627 * 119.92565 * 179.97438 * 5 4 2 7 7 C 1.39013 * 120.14342 * 0.02562 * 6 5 4 8 8 O 1.35707 * 119.89167 * 179.97438 * 7 6 5 9 9 C 1.42892 * 117.00155 * 354.52971 * 8 7 6 10 10 H 1.08996 * 109.47457 * 324.88896 * 9 8 7 11 11 C 1.52997 * 109.47083 * 84.89277 * 9 8 7 12 12 C 1.52999 * 109.47218 * 204.88855 * 9 8 7 13 13 C 1.50702 * 109.47030 * 65.00614 * 12 9 8 14 14 H 1.08006 * 120.00138 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99918 * 179.72504 * 13 12 9 16 16 N 1.31508 * 120.00337 * 0.26893 * 15 13 12 17 17 Si 1.86804 * 119.99845 * 180.27045 * 15 13 12 18 18 H 1.48500 * 109.46936 * 89.99892 * 17 15 13 19 19 H 1.48498 * 109.47085 * 209.99755 * 17 15 13 20 20 H 1.48501 * 109.47060 * 329.99937 * 17 15 13 21 21 C 1.39254 * 120.21509 * 0.26786 * 7 6 5 22 22 F 1.35101 * 119.96588 * 179.70708 * 21 7 6 23 23 C 1.37786 * 120.07482 * 359.45003 * 21 7 6 24 24 H 1.09002 * 109.47018 * 239.99848 * 1 2 3 25 25 H 1.09000 * 109.47453 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47102 * 120.00287 * 1 2 3 27 27 H 1.07999 * 120.03649 * 359.96182 * 5 4 2 28 28 H 1.07999 * 119.92931 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.47423 * 59.99896 * 11 9 8 30 30 H 1.09000 * 109.47214 * 180.02562 * 11 9 8 31 31 H 1.09007 * 109.47209 * 300.00102 * 11 9 8 32 32 H 1.08993 * 109.47639 * 305.00304 * 12 9 8 33 33 H 1.09000 * 109.47316 * 184.99905 * 12 9 8 34 34 H 0.97002 * 120.00121 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.07619 * 180.29112 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2717 0.0006 5 6 3.6416 -1.2743 0.0000 6 6 4.3259 -2.4684 0.0011 7 6 3.6301 -3.6718 0.0022 8 8 4.3101 -4.8462 0.0027 9 6 5.7319 -4.7727 -0.1193 10 1 5.9980 -3.9441 -0.7755 11 6 6.3513 -4.5488 1.2617 12 6 6.2615 -6.0811 -0.7096 13 6 5.7485 -6.2409 -2.1175 14 1 5.1083 -5.4851 -2.5481 15 6 6.1005 -7.3495 -2.8579 16 7 6.8796 -8.2701 -2.3335 17 14 5.4706 -7.5439 -4.6057 18 1 6.4297 -6.9165 -5.5501 19 1 5.3343 -8.9877 -4.9250 20 1 4.1473 -6.8820 -4.7315 21 6 2.2376 -3.6761 -0.0034 22 9 1.5664 -4.8487 -0.0084 23 6 1.5434 -2.4860 0.0013 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 4.1839 -0.3404 -0.0014 28 1 5.4059 -2.4704 0.0003 29 1 6.0853 -5.3774 1.9180 30 1 7.4359 -4.4922 1.1686 31 1 5.9740 -3.6166 1.6823 32 1 5.9203 -6.9186 -0.1013 33 1 7.3513 -6.0601 -0.7203 34 1 7.1270 -9.0502 -2.8543 35 1 0.4634 -2.4893 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:13 Heat of formation + Delta-G solvation = -126.513749 kcal Electronic energy + Delta-G solvation = -19720.127756 eV Core-core repulsion = 16404.070540 eV Total energy + Delta-G solvation = -3316.057216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.83250 -41.42097 -40.36122 -38.26059 -35.53605 -33.58319 -32.69233 -31.28440 -29.85891 -29.38309 -25.59479 -24.84253 -23.90795 -22.04913 -20.87298 -19.48756 -18.57408 -18.07557 -17.81068 -16.97017 -16.76015 -16.58640 -16.01700 -15.87526 -15.62370 -15.58132 -15.33374 -14.48112 -14.05295 -13.93698 -13.58755 -13.51254 -13.43175 -13.20604 -13.01994 -12.93756 -12.75749 -12.66729 -12.42861 -12.17378 -11.87057 -11.39043 -11.14603 -10.82002 -10.61475 -10.08479 -9.26779 -8.24256 -6.33582 -0.44932 0.05215 1.31476 1.36484 1.38056 1.48870 2.13830 2.37813 2.56052 2.99674 3.10599 3.21779 3.59576 3.78426 4.00306 4.04830 4.14887 4.22531 4.32162 4.44428 4.58460 4.68834 4.72406 4.76153 4.89877 4.93413 5.04552 5.11755 5.16461 5.30289 5.33283 5.39807 5.60757 5.72462 6.13117 6.40741 6.52852 6.77710 7.34405 8.87348 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.004846 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.542741 B = 5776.191335 C = 6173.328407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.408 3.592 3 O -0.501 6.501 4 C -0.205 4.205 5 C -0.026 4.026 6 C -0.205 4.205 7 C 0.125 3.875 8 O -0.310 6.310 9 C 0.089 3.911 10 H 0.076 0.924 11 C -0.169 4.169 12 C 0.028 3.972 13 C -0.535 4.535 14 H 0.050 0.950 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.272 1.272 21 C 0.020 3.980 22 F -0.144 7.144 23 C -0.045 4.045 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.075 0.925 32 H -0.002 1.002 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 14.979 6.103 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.289 3.711 3 O -0.380 6.380 4 C -0.206 4.206 5 C -0.044 4.044 6 C -0.224 4.224 7 C 0.076 3.924 8 O -0.222 6.222 9 C 0.034 3.966 10 H 0.094 0.906 11 C -0.226 4.226 12 C -0.009 4.009 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.196 1.196 21 C 0.000 4.000 22 F -0.123 7.123 23 C -0.064 4.064 24 H 0.136 0.864 25 H 0.107 0.893 26 H 0.133 0.867 27 H 0.169 0.831 28 H 0.172 0.828 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.017 0.983 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.726 15.094 6.087 19.492 hybrid contribution 0.208 -1.013 -0.879 1.358 sum -10.518 14.080 5.208 18.331 Atomic orbital electron populations 1.22317 0.90176 1.06209 1.06688 1.22729 0.93340 0.85946 0.69064 1.90541 1.73308 1.35062 1.39103 1.20385 0.94221 0.94821 1.11191 1.21439 0.93653 0.98016 0.91290 1.21357 1.01876 0.90470 1.08666 1.19967 0.91407 0.87272 0.93750 1.86237 1.23015 1.27583 1.85387 1.22803 0.75766 1.00533 0.97466 0.90642 1.22342 1.02258 1.02552 0.95469 1.19133 0.95727 0.91303 0.94756 1.21447 1.30034 1.06345 0.99456 0.93159 1.25825 0.95249 0.95450 1.02681 1.70050 1.37044 1.10965 1.38844 0.85558 0.78915 0.77504 0.79794 1.19254 1.20519 1.19630 1.17266 0.86937 0.82863 1.12899 1.91482 1.79775 1.46341 1.94734 1.21470 1.02284 0.87875 0.94728 0.86389 0.89255 0.86678 0.83135 0.82773 0.92453 0.89498 0.90590 0.98312 0.95115 0.92609 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 8.92 71.23 0.64 -1.35 16 2 C 0.41 7.94 7.22 27.94 0.20 8.14 16 3 O -0.50 -13.30 17.07 -3.08 -0.05 -13.35 16 4 C -0.20 -4.50 5.87 -20.15 -0.12 -4.62 16 5 C -0.03 -0.63 9.59 22.56 0.22 -0.41 16 6 C -0.21 -5.79 8.21 22.31 0.18 -5.61 16 7 C 0.12 4.30 6.62 22.70 0.15 4.45 16 8 O -0.31 -13.13 9.40 -90.28 -0.85 -13.97 16 9 C 0.09 3.58 2.17 30.59 0.07 3.64 16 10 H 0.08 2.84 6.30 -2.39 -0.02 2.83 16 11 C -0.17 -5.28 9.16 71.98 0.66 -4.62 16 12 C 0.03 1.43 4.68 29.85 0.14 1.57 16 13 C -0.53 -30.51 8.88 25.60 0.23 -30.28 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 17 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.02 0.62 7.30 22.41 0.16 0.79 16 22 F -0.14 -5.10 17.10 44.97 0.77 -4.33 16 23 C -0.05 -0.97 9.44 22.60 0.21 -0.76 16 24 H 0.12 0.68 8.08 -2.39 -0.02 0.66 16 25 H 0.09 0.87 8.12 -2.39 -0.02 0.85 16 26 H 0.11 0.76 8.08 -2.39 -0.02 0.74 16 27 H 0.15 3.28 7.64 -2.91 -0.02 3.26 16 28 H 0.15 4.00 5.39 -2.91 -0.02 3.99 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.08 1.97 6.89 -2.38 -0.02 1.95 16 32 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.19 2.40 7.04 -2.91 -0.02 2.38 16 Total: -1.00 -70.78 307.39 6.48 -64.30 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.10 Total: 4.39 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 3.20 Total: -28.23 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.28 Total: -55.63 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.90 Total: -27.33 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.77 Total: -4.33 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -70.78 6.48 -64.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.216 kcal (2) G-P(sol) polarization free energy of solvation -70.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds