Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00564 * 2 1 4 4 H 1.48497 * 109.47394 * 240.00230 * 3 2 1 5 5 H 1.48504 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47045 * 119.99898 * 3 2 1 7 7 C 1.37883 * 119.99335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47363 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47606 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47581 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99595 * 0.02562 * 12 11 10 14 14 O 1.34224 * 120.00302 * 180.02562 * 12 11 10 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47021 * 180.02562 * 15 14 12 17 17 C 1.38244 * 119.97519 * 269.73018 * 16 15 14 18 18 C 1.38201 * 120.02520 * 179.72689 * 17 16 15 19 19 C 1.38456 * 119.97116 * 0.56667 * 18 17 16 20 20 F 1.35107 * 120.02233 * 179.68205 * 19 18 17 21 21 C 1.38454 * 119.95276 * 359.70513 * 19 18 17 22 22 C 1.38202 * 119.97417 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99634 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47340 * 60.00630 * 9 7 2 25 25 H 1.09000 * 109.47644 * 300.00918 * 9 7 2 26 26 H 1.09005 * 109.47056 * 59.99909 * 10 9 7 27 27 H 1.09000 * 109.47303 * 300.00898 * 10 9 7 28 28 H 1.09009 * 109.46302 * 60.00341 * 11 10 9 29 29 H 1.08995 * 109.47159 * 300.00670 * 11 10 9 30 30 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 31 31 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 32 32 H 1.08001 * 119.98577 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.00919 * 180.24452 * 18 17 16 34 34 H 1.08000 * 120.01525 * 179.97438 * 21 19 18 35 35 H 1.07994 * 119.98538 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2449 -3.6622 -0.0005 11 6 1.4799 -4.9872 0.0001 12 6 2.4591 -6.1327 -0.0005 13 8 3.6471 -5.9119 -0.0009 14 8 2.0116 -7.3981 -0.0006 15 6 3.0116 -8.4510 -0.0007 16 6 2.3273 -9.7937 -0.0014 17 6 2.0183 -10.4121 1.1957 18 6 1.3857 -11.6408 1.1963 19 6 1.0720 -12.2578 -0.0029 20 9 0.4594 -13.4620 -0.0035 21 6 1.3871 -11.6401 -1.2013 22 6 2.0137 -10.4083 -1.1994 23 1 -0.4850 0.8401 -0.0004 24 1 0.6239 -2.5568 -0.8903 25 1 0.6244 -2.5571 0.8896 26 1 2.8716 -3.6045 0.8895 27 1 2.8717 -3.6044 -0.8904 28 1 0.8530 -5.0451 -0.8898 29 1 0.8535 -5.0446 0.8902 30 1 3.6344 -8.3605 -0.8906 31 1 3.6343 -8.3606 0.8894 32 1 2.2678 -9.9329 2.1309 33 1 1.1409 -12.1219 2.1317 34 1 1.1432 -12.1207 -2.1372 35 1 2.2591 -9.9262 -2.1340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846762183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = -128.936723 kcal Electronic energy + Delta-G solvation = -18428.600016 eV Core-core repulsion = 15112.437732 eV Total energy + Delta-G solvation = -3316.162284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.25721 -40.43469 -39.31796 -36.48639 -34.32151 -32.31792 -31.92716 -31.55857 -28.33380 -26.44618 -24.03867 -23.47679 -21.91794 -21.11764 -19.83876 -18.07373 -17.42434 -17.01633 -16.80471 -16.15549 -16.13675 -15.94177 -15.20922 -14.47831 -14.39795 -14.29720 -13.94915 -13.61364 -13.14567 -12.72033 -12.62720 -12.32418 -11.97371 -11.77020 -11.48233 -11.40833 -10.82355 -10.70581 -10.68939 -10.60737 -10.27625 -9.74989 -9.51328 -9.42977 -9.14299 -9.01677 -8.35033 -6.00605 -4.02652 0.60817 0.83275 2.44986 2.71053 3.34708 3.37185 3.38575 3.42180 3.85635 4.28218 4.31449 4.46765 4.50133 4.74570 4.82842 5.03040 5.16292 5.28435 5.35452 5.49825 5.55939 5.59993 5.64368 5.70574 5.79794 6.07511 6.08309 6.44992 6.52515 6.60105 6.80130 7.05686 7.65401 7.77165 7.97332 7.99197 8.41661 9.03905 9.61444 11.10828 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.054617 B = 0.002548 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.537062 B =10985.047498 C =11176.748044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.112 4.112 12 C 0.461 3.539 13 O -0.508 6.508 14 O -0.357 6.357 15 C 0.106 3.894 16 C -0.103 4.103 17 C -0.066 4.066 18 C -0.157 4.157 19 C 0.105 3.895 20 F -0.139 7.139 21 C -0.157 4.157 22 C -0.066 4.066 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -24.518 -0.003 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.304 3.696 13 O -0.395 6.395 14 O -0.275 6.275 15 C 0.032 3.968 16 C -0.104 4.104 17 C -0.084 4.084 18 C -0.175 4.175 19 C 0.086 3.914 20 F -0.118 7.118 21 C -0.175 4.175 22 C -0.084 4.084 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.504 -24.407 -0.003 24.535 hybrid contribution 0.408 0.600 0.000 0.726 sum 2.912 -23.808 -0.003 23.985 Atomic orbital electron populations 1.69950 1.06045 1.26760 1.50831 1.25020 0.94869 0.99282 0.95291 0.86634 0.79561 0.82998 0.78683 1.20211 1.21300 1.20217 1.21199 0.93138 0.90924 1.50658 0.92589 1.19121 0.93886 0.91144 0.97446 1.21584 0.98960 0.91223 1.01980 1.21711 0.97325 0.90544 1.05334 1.24466 0.90205 0.83251 0.71652 1.90651 1.18495 1.85065 1.45260 1.86628 1.40521 1.15836 1.84559 1.21708 0.89213 0.82246 1.03647 1.19641 1.01749 0.95369 0.93596 1.20993 0.95434 0.93738 0.98217 1.21159 1.02176 0.96863 0.97334 1.17796 0.96777 0.82086 0.94783 1.91513 1.80507 1.42330 1.97448 1.21158 1.02233 0.96803 0.97345 1.20992 0.95453 0.93713 0.98215 0.92925 0.96347 0.96353 0.92426 0.92418 0.88045 0.88035 0.90178 0.90171 0.84555 0.84374 0.84377 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.11 -1.81 5.81 -27.89 -0.16 -1.97 16 12 C 0.46 7.30 7.96 36.00 0.29 7.59 16 13 O -0.51 -9.37 15.73 -18.76 -0.30 -9.67 16 14 O -0.36 -4.85 10.20 -39.24 -0.40 -5.25 16 15 C 0.11 1.14 5.59 36.01 0.20 1.34 16 16 C -0.10 -0.97 5.52 -104.62 -0.58 -1.54 16 17 C -0.07 -0.55 9.70 -39.59 -0.38 -0.94 16 18 C -0.16 -1.27 10.03 -39.51 -0.40 -1.67 16 19 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 20 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 21 C -0.16 -1.27 10.03 -39.52 -0.40 -1.67 16 22 C -0.07 -0.55 9.70 -39.59 -0.38 -0.94 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 28 H 0.10 1.51 8.14 -51.92 -0.42 1.08 16 29 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -31.92 316.16 -7.55 -39.47 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.60 Total: -4.17 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -2.77 Total: -14.53 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.70 Total: -14.91 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.92 -7.55 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846762183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.469 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds