Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00564 * 2 1 4 4 H 1.48497 * 109.47394 * 240.00230 * 3 2 1 5 5 H 1.48504 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47045 * 119.99898 * 3 2 1 7 7 C 1.37883 * 119.99335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47363 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47606 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47581 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99595 * 0.02562 * 12 11 10 14 14 O 1.34224 * 120.00302 * 180.02562 * 12 11 10 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47021 * 180.02562 * 15 14 12 17 17 C 1.38244 * 119.97519 * 269.73018 * 16 15 14 18 18 C 1.38201 * 120.02520 * 179.72689 * 17 16 15 19 19 C 1.38456 * 119.97116 * 0.56667 * 18 17 16 20 20 F 1.35107 * 120.02233 * 179.68205 * 19 18 17 21 21 C 1.38454 * 119.95276 * 359.70513 * 19 18 17 22 22 C 1.38202 * 119.97417 * 359.97438 * 21 19 18 23 23 H 0.97003 * 119.99634 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47340 * 60.00630 * 9 7 2 25 25 H 1.09000 * 109.47644 * 300.00918 * 9 7 2 26 26 H 1.09005 * 109.47056 * 59.99909 * 10 9 7 27 27 H 1.09000 * 109.47303 * 300.00898 * 10 9 7 28 28 H 1.09009 * 109.46302 * 60.00341 * 11 10 9 29 29 H 1.08995 * 109.47159 * 300.00670 * 11 10 9 30 30 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 31 31 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 32 32 H 1.08001 * 119.98577 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.00919 * 180.24452 * 18 17 16 34 34 H 1.08000 * 120.01525 * 179.97438 * 21 19 18 35 35 H 1.07994 * 119.98538 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2449 -3.6622 -0.0005 11 6 1.4799 -4.9872 0.0001 12 6 2.4591 -6.1327 -0.0005 13 8 3.6471 -5.9119 -0.0009 14 8 2.0116 -7.3981 -0.0006 15 6 3.0116 -8.4510 -0.0007 16 6 2.3273 -9.7937 -0.0014 17 6 2.0183 -10.4121 1.1957 18 6 1.3857 -11.6408 1.1963 19 6 1.0720 -12.2578 -0.0029 20 9 0.4594 -13.4620 -0.0035 21 6 1.3871 -11.6401 -1.2013 22 6 2.0137 -10.4083 -1.1994 23 1 -0.4850 0.8401 -0.0004 24 1 0.6239 -2.5568 -0.8903 25 1 0.6244 -2.5571 0.8896 26 1 2.8716 -3.6045 0.8895 27 1 2.8717 -3.6044 -0.8904 28 1 0.8530 -5.0451 -0.8898 29 1 0.8535 -5.0446 0.8902 30 1 3.6344 -8.3605 -0.8906 31 1 3.6343 -8.3606 0.8894 32 1 2.2678 -9.9329 2.1309 33 1 1.1409 -12.1219 2.1317 34 1 1.1432 -12.1207 -2.1372 35 1 2.2591 -9.9262 -2.1340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846762183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = -145.035213 kcal Electronic energy + Delta-G solvation = -18429.298099 eV Core-core repulsion = 15112.437732 eV Total energy + Delta-G solvation = -3316.860367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.95775 -41.58433 -40.05993 -37.66678 -36.15050 -34.10629 -32.87017 -32.17613 -30.04474 -27.46657 -25.80731 -24.09992 -22.96824 -22.38270 -21.35569 -18.76478 -18.74255 -18.39294 -17.91425 -17.53740 -17.14973 -16.64115 -16.51286 -16.06688 -15.73237 -15.09071 -14.63312 -14.49017 -14.48767 -13.97571 -13.84373 -13.82599 -13.32686 -13.11507 -12.69608 -12.62734 -12.48885 -12.41855 -12.08409 -11.71936 -11.66050 -11.54080 -11.37710 -11.16007 -10.52847 -10.12832 -9.74824 -8.19109 -6.29083 -0.09212 0.21801 1.20049 1.41501 1.44023 1.51983 1.70960 2.42745 2.62606 3.14384 3.20843 3.53136 3.65231 3.86347 3.95836 4.03270 4.16508 4.21449 4.25308 4.40455 4.49524 4.71133 4.89372 4.91686 4.92526 5.06521 5.08638 5.14728 5.17896 5.36913 5.42473 5.54609 5.74721 5.82327 5.87586 6.27354 6.75780 6.86776 7.39616 8.92306 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.054617 B = 0.002548 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.537062 B =10985.047498 C =11176.748044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.086 4.086 11 C -0.106 4.106 12 C 0.472 3.528 13 O -0.538 6.538 14 O -0.354 6.354 15 C 0.103 3.897 16 C -0.116 4.116 17 C -0.069 4.069 18 C -0.158 4.158 19 C 0.091 3.909 20 F -0.146 7.146 21 C -0.158 4.158 22 C -0.069 4.069 23 H 0.264 0.736 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -25.094 -0.002 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.124 4.124 11 C -0.144 4.144 12 C 0.317 3.683 13 O -0.427 6.427 14 O -0.271 6.271 15 C 0.030 3.970 16 C -0.116 4.116 17 C -0.087 4.087 18 C -0.177 4.177 19 C 0.072 3.928 20 F -0.124 7.124 21 C -0.177 4.177 22 C -0.087 4.087 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.879 -25.012 -0.001 25.177 hybrid contribution 0.263 0.681 -0.001 0.730 sum 3.142 -24.331 -0.002 24.533 Atomic orbital electron populations 1.70062 1.07551 1.27866 1.51523 1.25910 0.95798 1.03106 0.94740 0.85555 0.78357 0.78389 0.79090 1.19366 1.20609 1.19378 1.21659 0.93459 0.92637 1.50781 0.92714 1.19015 0.94226 0.92189 0.95832 1.21274 0.97871 0.92130 1.01129 1.21516 0.97099 0.88674 1.07067 1.24127 0.89311 0.83940 0.70934 1.90646 1.19585 1.85633 1.46859 1.86594 1.41299 1.15342 1.83888 1.21928 0.88938 0.81914 1.04262 1.19644 1.02673 0.94821 0.94450 1.21190 0.95096 0.93832 0.98575 1.21370 1.01663 0.96738 0.97902 1.18050 0.97164 0.82085 0.95533 1.91497 1.80702 1.42738 1.97510 1.21368 1.01719 0.96675 0.97913 1.21189 0.95120 0.93816 0.98572 0.92676 0.97869 0.97874 0.93261 0.93254 0.86363 0.86354 0.89647 0.89635 0.83155 0.82683 0.82687 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.57 4.44 30.59 0.14 -3.43 16 11 C -0.11 -3.33 5.81 29.85 0.17 -3.15 16 12 C 0.47 14.36 7.96 71.23 0.57 14.93 16 13 O -0.54 -19.42 15.73 21.94 0.35 -19.07 16 14 O -0.35 -8.99 10.20 -51.35 -0.52 -9.51 16 15 C 0.10 2.05 5.59 71.24 0.40 2.45 16 16 C -0.12 -1.97 5.52 -19.86 -0.11 -2.08 16 17 C -0.07 -1.04 9.70 22.26 0.22 -0.82 16 18 C -0.16 -2.31 10.03 22.31 0.22 -2.09 16 19 C 0.09 1.50 7.30 22.37 0.16 1.66 16 20 F -0.15 -2.65 17.27 44.97 0.78 -1.87 16 21 C -0.16 -2.31 10.03 22.31 0.22 -2.09 16 22 C -0.07 -1.04 9.70 22.26 0.22 -0.83 16 23 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 24 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 26 H 0.05 2.09 8.10 -2.38 -0.02 2.07 16 27 H 0.05 2.09 8.10 -2.39 -0.02 2.07 16 28 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 29 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 31 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 32 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -67.47 316.16 7.04 -60.43 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.08 Total: 3.74 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.05 Total: -24.54 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.18 Total: -28.58 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.47 7.04 -60.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846762183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.601 kcal (2) G-P(sol) polarization free energy of solvation -67.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds