Wall clock time and date at job start Mon Mar 30 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.95442 * 2 1 4 4 C 1.38131 * 120.08039 * 180.21284 * 3 2 1 5 5 C 1.38770 * 119.99374 * 359.50812 * 4 3 2 6 6 O 1.35922 * 120.04312 * 180.28096 * 5 4 3 7 7 C 1.34269 * 117.00128 * 68.99258 * 6 5 4 8 8 O 1.20825 * 120.00003 * 5.77425 * 7 6 5 9 9 C 1.50694 * 119.99873 * 185.77372 * 7 6 5 10 10 C 1.52995 * 109.47036 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47227 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47223 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99979 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99991 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00194 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46961 * 60.00307 * 16 14 12 18 18 H 1.48498 * 109.46895 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46821 * 300.00266 * 16 14 12 20 20 C 1.38674 * 119.91427 * 0.25797 * 5 4 3 21 21 C 1.38386 * 119.91773 * 359.97438 * 20 5 4 22 22 F 1.35103 * 119.99388 * 180.02562 * 21 20 5 23 23 H 1.09000 * 109.47444 * 270.25703 * 1 2 3 24 24 H 1.08999 * 109.47353 * 30.25825 * 1 2 3 25 25 H 1.09005 * 109.47089 * 150.25595 * 1 2 3 26 26 H 1.08001 * 119.96299 * 359.97245 * 3 2 1 27 27 H 1.08000 * 120.00578 * 179.79594 * 4 3 2 28 28 H 1.09002 * 109.47219 * 299.99752 * 9 7 6 29 29 H 1.08993 * 109.47586 * 59.99894 * 9 7 6 30 30 H 1.09000 * 109.47130 * 299.99501 * 10 9 7 31 31 H 1.08992 * 109.47633 * 59.99779 * 10 9 7 32 32 H 1.09002 * 109.47115 * 299.99544 * 11 10 9 33 33 H 1.09001 * 109.47395 * 59.99867 * 11 10 9 34 34 H 0.96993 * 120.00416 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.04070 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5786 1.2009 -0.0044 5 6 4.2750 0.0006 0.0014 6 8 5.6342 0.0025 0.0028 7 6 6.2421 0.4369 1.1184 8 8 5.5874 0.7043 2.0981 9 6 7.7408 0.5910 1.1486 10 6 8.1739 1.0963 2.5263 11 6 9.6955 1.2534 2.5568 12 6 10.1220 1.7517 3.9135 13 1 9.3818 1.9374 4.6778 14 6 11.4572 1.9696 4.1795 15 7 12.3586 1.7429 3.2491 16 14 11.9860 2.5866 5.8616 17 1 11.5677 1.6115 6.9005 18 1 13.4628 2.7391 5.8910 19 1 11.3476 3.9003 6.1300 20 6 3.5824 -1.2008 0.0063 21 6 2.1985 -1.1996 0.0059 22 9 1.5222 -2.3692 0.0112 23 1 -0.3634 0.0046 1.0276 24 1 -0.3634 0.8876 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.6560 2.1324 -0.0004 27 1 4.1166 2.1373 -0.0078 28 1 8.2092 -0.3734 0.9521 29 1 8.0480 1.3063 0.3858 30 1 7.7055 2.0607 2.7232 31 1 7.8667 0.3807 3.2889 32 1 10.1643 0.2893 2.3596 33 1 10.0023 1.9693 1.7942 34 1 13.2979 1.8965 3.4360 35 1 4.1223 -2.1361 0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847000259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:14 Heat of formation + Delta-G solvation = -120.135833 kcal Electronic energy + Delta-G solvation = -18889.630675 eV Core-core repulsion = 15573.850026 eV Total energy + Delta-G solvation = -3315.780649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.19120 -41.34599 -38.93126 -36.94994 -34.39630 -32.66682 -32.10514 -30.94429 -28.50150 -26.89033 -24.40169 -23.33427 -22.51542 -21.00964 -19.96625 -18.48252 -17.43068 -17.11066 -16.33196 -16.12921 -15.97739 -15.77756 -15.58821 -14.47229 -14.28027 -14.07433 -13.74074 -13.50940 -13.40852 -12.91702 -12.44001 -12.21025 -12.08844 -11.92411 -11.65851 -11.52163 -11.09549 -10.84723 -10.77849 -10.64756 -10.43141 -9.80335 -9.47722 -9.23164 -9.15226 -8.76920 -8.37306 -6.02853 -4.05146 0.65920 0.84710 2.24608 2.60488 3.32454 3.33451 3.37392 3.40770 3.95697 4.40543 4.41971 4.44957 4.63432 4.72635 4.91978 5.21802 5.24357 5.32217 5.33250 5.50075 5.52337 5.62729 5.65708 5.72816 5.96811 5.97976 6.02421 6.33236 6.53443 6.63330 6.73370 7.00552 7.61821 7.72952 7.88431 7.96303 8.38495 9.01256 9.59202 11.08533 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045722 B = 0.002955 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.253832 B = 9474.009240 C = 9607.313387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.076 4.076 4 C -0.131 4.131 5 C 0.117 3.883 6 O -0.299 6.299 7 C 0.458 3.542 8 O -0.486 6.486 9 C -0.108 4.108 10 C -0.101 4.101 11 C 0.022 3.978 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.153 4.153 21 C 0.111 3.889 22 F -0.133 7.133 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.922 -3.507 -10.143 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.125 4.125 3 C -0.094 4.094 4 C -0.149 4.149 5 C 0.075 3.925 6 O -0.215 6.215 7 C 0.302 3.698 8 O -0.369 6.369 9 C -0.146 4.146 10 C -0.138 4.138 11 C -0.015 4.015 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.173 4.173 21 C 0.092 3.908 22 F -0.112 7.112 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.158 0.842 27 H 0.154 0.846 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.969 -3.476 -9.845 23.424 hybrid contribution 0.299 0.086 0.889 0.942 sum -20.670 -3.390 -8.956 22.781 Atomic orbital electron populations 1.20731 0.89767 1.03427 1.03030 1.20003 0.97351 0.91792 1.03306 1.20766 0.93101 0.97410 0.98131 1.21421 0.94846 0.97778 1.00888 1.18214 0.81770 0.92658 0.99849 1.84710 1.17419 1.78103 1.41279 1.24977 0.92746 0.72487 0.79546 1.90690 1.66892 1.44775 1.34551 1.21770 0.84001 1.05132 1.03671 1.21621 1.00321 1.00610 0.91290 1.19120 0.87607 0.97370 0.97440 1.21187 0.92228 1.44342 0.98267 0.92573 1.25014 0.96770 0.95584 0.97032 1.69943 1.01295 1.49070 1.33241 0.86631 0.77330 0.79456 0.84458 1.20195 1.21273 1.20201 1.21005 0.92562 0.99147 1.04549 1.17138 0.89088 0.81157 1.03451 1.91497 1.79933 1.45892 1.93875 0.90598 0.90756 0.91084 0.84190 0.84620 0.87647 0.87607 0.92306 0.92285 0.96274 0.96276 0.92886 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.83 36.01 0.35 -0.45 16 2 C -0.12 -1.23 5.89 -104.53 -0.62 -1.84 16 3 C -0.08 -0.74 9.69 -39.61 -0.38 -1.12 16 4 C -0.13 -1.54 9.33 -39.42 -0.37 -1.91 16 5 C 0.12 1.57 5.27 -39.22 -0.21 1.36 16 6 O -0.30 -4.29 10.04 -23.62 -0.24 -4.53 16 7 C 0.46 7.34 7.73 36.00 0.28 7.62 16 8 O -0.49 -9.12 15.39 -18.75 -0.29 -9.41 16 9 C -0.11 -1.71 5.81 -27.89 -0.16 -1.87 16 10 C -0.10 -2.05 4.44 -26.73 -0.12 -2.16 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.15 -1.89 9.97 -39.37 -0.39 -2.28 16 21 C 0.11 1.27 7.24 -39.44 -0.29 0.99 16 22 F -0.13 -1.52 16.47 2.25 0.04 -1.49 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 25 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 26 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 27 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -31.48 313.64 -7.08 -38.56 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -4.58 Total: -3.88 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.45 Total: -14.75 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.53 Total: -13.94 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.48 -7.08 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847000259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.579 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds