Wall clock time and date at job start Mon Mar 30 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.95442 * 2 1 4 4 C 1.38131 * 120.08039 * 180.21284 * 3 2 1 5 5 C 1.38770 * 119.99374 * 359.50812 * 4 3 2 6 6 O 1.35922 * 120.04312 * 180.28096 * 5 4 3 7 7 C 1.34269 * 117.00128 * 68.99258 * 6 5 4 8 8 O 1.20825 * 120.00003 * 5.77425 * 7 6 5 9 9 C 1.50694 * 119.99873 * 185.77372 * 7 6 5 10 10 C 1.52995 * 109.47036 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47227 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47223 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99979 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99991 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00194 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46961 * 60.00307 * 16 14 12 18 18 H 1.48498 * 109.46895 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46821 * 300.00266 * 16 14 12 20 20 C 1.38674 * 119.91427 * 0.25797 * 5 4 3 21 21 C 1.38386 * 119.91773 * 359.97438 * 20 5 4 22 22 F 1.35103 * 119.99388 * 180.02562 * 21 20 5 23 23 H 1.09000 * 109.47444 * 270.25703 * 1 2 3 24 24 H 1.08999 * 109.47353 * 30.25825 * 1 2 3 25 25 H 1.09005 * 109.47089 * 150.25595 * 1 2 3 26 26 H 1.08001 * 119.96299 * 359.97245 * 3 2 1 27 27 H 1.08000 * 120.00578 * 179.79594 * 4 3 2 28 28 H 1.09002 * 109.47219 * 299.99752 * 9 7 6 29 29 H 1.08993 * 109.47586 * 59.99894 * 9 7 6 30 30 H 1.09000 * 109.47130 * 299.99501 * 10 9 7 31 31 H 1.08992 * 109.47633 * 59.99779 * 10 9 7 32 32 H 1.09002 * 109.47115 * 299.99544 * 11 10 9 33 33 H 1.09001 * 109.47395 * 59.99867 * 11 10 9 34 34 H 0.96993 * 120.00416 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.04070 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5786 1.2009 -0.0044 5 6 4.2750 0.0006 0.0014 6 8 5.6342 0.0025 0.0028 7 6 6.2421 0.4369 1.1184 8 8 5.5874 0.7043 2.0981 9 6 7.7408 0.5910 1.1486 10 6 8.1739 1.0963 2.5263 11 6 9.6955 1.2534 2.5568 12 6 10.1220 1.7517 3.9135 13 1 9.3818 1.9374 4.6778 14 6 11.4572 1.9696 4.1795 15 7 12.3586 1.7429 3.2491 16 14 11.9860 2.5866 5.8616 17 1 11.5677 1.6115 6.9005 18 1 13.4628 2.7391 5.8910 19 1 11.3476 3.9003 6.1300 20 6 3.5824 -1.2008 0.0063 21 6 2.1985 -1.1996 0.0059 22 9 1.5222 -2.3692 0.0112 23 1 -0.3634 0.0046 1.0276 24 1 -0.3634 0.8876 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.6560 2.1324 -0.0004 27 1 4.1166 2.1373 -0.0078 28 1 8.2092 -0.3734 0.9521 29 1 8.0480 1.3063 0.3858 30 1 7.7055 2.0607 2.7232 31 1 7.8667 0.3807 3.2889 32 1 10.1643 0.2893 2.3596 33 1 10.0023 1.9693 1.7942 34 1 13.2979 1.8965 3.4360 35 1 4.1223 -2.1361 0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847000259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:13 Heat of formation + Delta-G solvation = -135.808159 kcal Electronic energy + Delta-G solvation = -18890.310278 eV Core-core repulsion = 15573.850026 eV Total energy + Delta-G solvation = -3316.460252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.06834 -42.48509 -39.91645 -38.11708 -36.20820 -34.16058 -33.36741 -31.79487 -30.17439 -27.87419 -26.08569 -24.19569 -23.80788 -22.26463 -21.46656 -19.59558 -18.69611 -18.39054 -17.99398 -17.12087 -17.00736 -16.80393 -16.62250 -16.45145 -15.53665 -15.10118 -14.73820 -14.51565 -14.33404 -14.19770 -13.89120 -13.72637 -13.21216 -13.06025 -12.79029 -12.65902 -12.57333 -12.47356 -12.46133 -12.11137 -11.80928 -11.59874 -11.42476 -11.21152 -10.53685 -10.08888 -9.65360 -8.20044 -6.30002 -0.25014 -0.01706 0.99340 1.40917 1.43278 1.50500 1.53668 2.40668 2.43388 3.07672 3.13596 3.57570 3.60562 3.71285 3.84835 4.03363 4.13355 4.17096 4.39485 4.54184 4.69441 4.74117 4.82390 4.86721 4.88094 5.01608 5.08488 5.10454 5.14782 5.20920 5.31311 5.52819 5.71721 5.72759 5.86073 6.25913 6.67113 6.85609 7.38780 8.91298 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045722 B = 0.002955 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.253832 B = 9474.009240 C = 9607.313387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.117 4.117 3 C -0.071 4.071 4 C -0.138 4.138 5 C 0.082 3.918 6 O -0.293 6.293 7 C 0.468 3.532 8 O -0.517 6.517 9 C -0.101 4.101 10 C -0.087 4.087 11 C 0.025 3.975 12 C -0.548 4.548 13 H 0.054 0.946 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.163 4.163 21 C 0.097 3.903 22 F -0.135 7.135 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.175 0.825 27 H 0.141 0.859 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.265 0.735 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.460 -2.862 -10.140 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.157 4.157 5 C 0.041 3.959 6 O -0.208 6.208 7 C 0.314 3.686 8 O -0.404 6.404 9 C -0.138 4.138 10 C -0.125 4.125 11 C -0.012 4.012 12 C -0.586 4.586 13 H 0.072 0.928 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.182 4.182 21 C 0.077 3.923 22 F -0.114 7.114 23 H 0.102 0.898 24 H 0.116 0.884 25 H 0.090 0.910 26 H 0.192 0.808 27 H 0.159 0.841 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.520 -2.842 -9.864 24.750 hybrid contribution 0.686 -0.137 0.832 1.087 sum -21.835 -2.979 -9.032 23.816 Atomic orbital electron populations 1.20841 0.87478 1.04727 1.03918 1.20418 0.99028 0.91154 1.01172 1.21159 0.92314 0.98758 0.96647 1.21648 0.95993 0.97387 1.00648 1.18496 0.81188 0.93793 1.02420 1.84675 1.18454 1.77564 1.40124 1.24784 0.92577 0.71758 0.79499 1.90675 1.67552 1.46413 1.35735 1.21581 0.84361 1.06516 1.01347 1.21301 0.97014 1.00232 0.93924 1.19008 0.90596 0.95850 0.95728 1.21651 0.92697 1.44606 0.99662 0.92760 1.25889 0.96847 0.95681 1.01014 1.70053 1.01665 1.49930 1.35275 0.85570 0.77115 0.79142 0.79664 1.19476 1.20579 1.19341 1.21113 0.93248 0.99123 1.04721 1.17317 0.88948 0.81796 1.04213 1.91489 1.79828 1.46116 1.93970 0.89751 0.88353 0.90968 0.80770 0.84114 0.85857 0.85474 0.93007 0.93336 0.97783 0.97590 0.92650 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.83 71.24 0.70 -0.57 16 2 C -0.12 -2.07 5.89 -19.81 -0.12 -2.19 16 3 C -0.07 -1.20 9.69 22.25 0.22 -0.99 16 4 C -0.14 -3.09 9.33 22.37 0.21 -2.88 16 5 C 0.08 2.18 5.27 22.50 0.12 2.29 16 6 O -0.29 -8.28 10.04 4.51 0.05 -8.23 16 7 C 0.47 14.80 7.73 71.23 0.55 15.35 16 8 O -0.52 -19.42 15.39 21.96 0.34 -19.09 16 9 C -0.10 -3.12 5.81 29.84 0.17 -2.94 16 10 C -0.09 -3.55 4.44 30.59 0.14 -3.42 16 11 C 0.03 1.28 4.97 29.85 0.15 1.43 16 12 C -0.55 -31.20 9.11 25.60 0.23 -30.96 16 13 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 16 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 C -0.16 -3.98 9.97 22.41 0.22 -3.76 16 21 C 0.10 2.12 7.24 22.36 0.16 2.29 16 22 F -0.14 -2.98 16.47 44.97 0.74 -2.24 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.10 0.65 8.09 -2.39 -0.02 0.64 16 25 H 0.07 0.82 7.64 -2.38 -0.02 0.80 16 26 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 27 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.05 2.16 8.10 -2.39 -0.02 2.14 16 31 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -67.68 313.64 7.73 -59.94 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.08 Total: 4.22 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 3.22 Total: -25.67 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.28 Total: -55.22 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: 0.38 Total: -27.32 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.74 Total: -2.24 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.68 7.73 -59.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847000259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.867 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds