Wall clock time and date at job start Mon Mar 30 2020 07:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99732 * 2 1 4 4 H 1.48497 * 109.46770 * 270.00170 * 3 2 1 5 5 H 1.48501 * 109.47042 * 29.99952 * 3 2 1 6 6 H 1.48498 * 109.47081 * 149.99748 * 3 2 1 7 7 C 1.37878 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99315 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00049 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47010 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47251 * 180.02562 * 11 10 9 13 13 O 1.21287 * 119.99628 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00163 * 180.02562 * 12 11 10 15 15 N 1.40097 * 119.99967 * 179.97438 * 14 12 11 16 16 C 1.39671 * 119.99833 * 180.02562 * 15 14 12 17 17 C 1.38946 * 120.06186 * 359.97438 * 16 15 14 18 18 C 1.38100 * 119.97200 * 180.02562 * 17 16 15 19 19 C 1.38266 * 120.10196 * 0.02562 * 18 17 16 20 20 C 1.38502 * 120.12307 * 0.02562 * 19 18 17 21 21 F 1.35102 * 119.98545 * 179.97438 * 20 19 18 22 22 C 1.38346 * 120.02423 * 359.97438 * 20 19 18 23 23 H 0.96995 * 120.00538 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46845 * 60.00459 * 9 7 2 25 25 H 1.09002 * 109.47218 * 300.00276 * 9 7 2 26 26 H 1.09001 * 109.47211 * 60.00363 * 10 9 7 27 27 H 1.08994 * 109.47255 * 300.00310 * 10 9 7 28 28 H 1.08989 * 109.47333 * 60.00256 * 11 10 9 29 29 H 1.09002 * 109.47117 * 299.99902 * 11 10 9 30 30 H 0.96999 * 120.00022 * 359.97438 * 14 12 11 31 31 H 0.96999 * 120.00011 * 359.97438 * 15 14 12 32 32 H 1.07995 * 120.01377 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.94820 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.94070 * 179.97438 * 19 18 17 35 35 H 1.07991 * 120.04979 * 180.27899 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6363 0.0001 12 6 6.0541 -4.0571 -0.0004 13 8 5.2660 -4.9790 -0.0003 14 7 7.3791 -4.3033 0.0001 15 7 7.8462 -5.6242 0.0002 16 6 9.2194 -5.8793 0.0012 17 6 10.1234 -4.8241 0.0016 18 6 11.4807 -5.0784 0.0021 19 6 11.9420 -6.3819 0.0016 20 6 11.0445 -7.4368 0.0001 21 9 11.4983 -8.7093 -0.0008 22 6 9.6836 -7.1879 -0.0004 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8746 -0.6806 -0.8905 26 1 3.6580 -3.1504 -0.8897 27 1 3.6586 -3.1500 0.8902 28 1 5.9149 -2.1225 0.8900 29 1 5.9150 -2.1225 -0.8899 30 1 8.0094 -3.5660 0.0004 31 1 7.2159 -6.3615 0.0002 32 1 9.7646 -3.8054 0.0016 33 1 12.1830 -4.2580 0.0029 34 1 13.0041 -6.5778 0.0016 35 1 8.9835 -8.0101 0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847601786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:48 Heat of formation + Delta-G solvation = -32.090998 kcal Electronic energy + Delta-G solvation = -18524.541803 eV Core-core repulsion = 15244.871816 eV Total energy + Delta-G solvation = -3279.669987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.19600 -40.27618 -39.13726 -36.09690 -34.41538 -32.64016 -32.01399 -30.77506 -29.17217 -27.79277 -24.07591 -23.40271 -22.31158 -20.97632 -20.06091 -18.79991 -17.74225 -16.92046 -16.62517 -16.47460 -16.10380 -15.92864 -15.72000 -15.14781 -14.36148 -14.11189 -14.09170 -13.81522 -13.40642 -13.26825 -12.71455 -12.19613 -12.09951 -11.89332 -11.64437 -11.55771 -11.08752 -10.85048 -10.21029 -9.97428 -9.80215 -9.68920 -9.65400 -9.20291 -9.16924 -8.55270 -7.62494 -6.04647 -4.03114 0.83915 1.03274 1.67936 2.57134 3.28321 3.31543 3.35729 3.37676 3.83948 4.05098 4.41346 4.43090 4.60346 4.71499 4.79371 5.03193 5.24421 5.28180 5.36535 5.41615 5.59659 5.70685 5.84829 5.89712 6.02749 6.31546 6.44848 6.55655 6.64340 6.81856 7.08208 7.28759 7.37508 7.42677 7.77321 8.19375 8.54103 9.01662 9.56840 11.08953 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.051900 B = 0.002736 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.366601 B =10231.440189 C =10745.058563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.130 4.130 12 C 0.513 3.487 13 O -0.532 6.532 14 N -0.533 5.533 15 N -0.538 5.538 16 C 0.251 3.749 17 C -0.214 4.214 18 C -0.036 4.036 19 C -0.217 4.217 20 C 0.153 3.847 21 F -0.138 7.138 22 C -0.232 4.232 23 H 0.263 0.737 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.421 0.579 31 H 0.435 0.565 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.902 -9.509 0.029 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.171 4.171 12 C 0.301 3.699 13 O -0.405 6.405 14 N -0.282 5.282 15 N -0.261 5.261 16 C 0.144 3.856 17 C -0.238 4.238 18 C -0.054 4.054 19 C -0.238 4.238 20 C 0.133 3.867 21 F -0.117 7.117 22 C -0.257 4.257 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.263 0.737 31 H 0.279 0.721 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 25.045 -9.906 0.032 26.933 hybrid contribution 0.510 0.721 -0.020 0.883 sum 25.556 -9.186 0.012 27.156 Atomic orbital electron populations 1.69916 1.06328 1.26873 1.51106 1.25058 0.94752 0.99187 0.94640 0.86755 0.80300 0.83618 0.78428 1.20326 1.21425 1.19025 1.21136 0.89438 0.94585 1.50727 0.90920 1.19604 0.97429 0.91853 0.96245 1.21308 0.88486 0.99934 1.02839 1.21866 1.00964 0.89918 1.04377 1.21597 0.79389 0.93499 0.75459 1.90730 1.54539 1.46379 1.48884 1.45292 1.07512 0.97327 1.78099 1.43427 1.03085 0.97882 1.81700 1.17395 0.82034 0.93115 0.93009 1.20520 0.93096 0.97753 1.12386 1.20709 0.94642 0.96016 0.94069 1.20903 0.99830 0.92001 1.11076 1.17258 0.91593 0.78729 0.99108 1.91507 1.89563 1.37001 1.93590 1.20266 0.94636 0.95789 1.14996 0.92728 0.96528 0.96972 0.91857 0.91839 0.88689 0.88702 0.73715 0.72112 0.85795 0.84812 0.84981 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 10 C -0.09 -1.69 4.44 -26.73 -0.12 -1.81 16 11 C -0.13 -1.77 5.70 -27.88 -0.16 -1.93 16 12 C 0.51 7.13 7.95 -10.98 -0.09 7.04 16 13 O -0.53 -9.59 15.82 5.55 0.09 -9.50 16 14 N -0.53 -5.54 6.22 31.22 0.19 -5.35 16 15 N -0.54 -5.59 6.45 32.41 0.21 -5.38 16 16 C 0.25 2.32 6.72 -83.80 -0.56 1.76 16 17 C -0.21 -1.66 9.48 -39.37 -0.37 -2.04 16 18 C -0.04 -0.24 10.04 -39.62 -0.40 -0.64 16 19 C -0.22 -1.68 10.02 -39.47 -0.40 -2.07 16 20 C 0.15 1.41 7.30 -39.44 -0.29 1.13 16 21 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 22 C -0.23 -2.12 9.87 -39.31 -0.39 -2.51 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 26 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 27 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 28 H 0.09 1.09 8.14 -51.94 -0.42 0.67 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.42 3.06 6.60 -182.60 -1.21 1.86 16 31 H 0.44 4.73 8.01 -182.60 -1.46 3.27 16 32 H 0.12 0.73 6.20 -52.49 -0.33 0.41 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 307.16 15.07 4.63 4.63 Total: -1.00 -33.60 307.16 -8.35 -41.95 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.30 Total: 0.48 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -3.31 Total: -14.89 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 1.18 Total: -37.89 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.60 -8.35 -41.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847601786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.859 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds