Wall clock time and date at job start Mon Mar 30 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47170 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47132 * 180.02562 * 16 15 14 18 18 C 1.38226 * 120.01660 * 99.99973 * 17 16 15 19 19 C 1.38221 * 120.02596 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.05240 * 0.02562 * 19 18 17 21 21 C 1.38173 * 120.02486 * 0.02562 * 20 19 18 22 22 C 1.38442 * 120.01218 * 279.72407 * 17 16 15 23 23 F 1.35099 * 120.02397 * 359.97438 * 22 17 16 24 24 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 25 25 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 26 26 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 27 27 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 28 28 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 29 29 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 30 30 H 1.09000 * 109.47434 * 299.99691 * 16 15 14 31 31 H 1.08990 * 109.47482 * 60.00408 * 16 15 14 32 32 H 1.07997 * 119.98102 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.97278 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.98666 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.01032 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7554 -0.3189 4.8835 17 6 2.2952 -1.0802 6.0668 18 6 3.4102 -0.6148 6.7382 19 6 3.9050 -1.3126 7.8239 20 6 3.2859 -2.4770 8.2393 21 6 2.1718 -2.9447 7.5690 22 6 1.6710 -2.2429 6.4853 23 9 0.5776 -2.6954 5.8336 24 1 -0.3632 0.4127 -0.9411 25 1 -0.3633 -1.0214 0.1131 26 1 -0.3633 0.6087 0.8280 27 1 2.2477 -1.8382 -3.4691 28 1 1.8642 -2.0126 3.5570 29 1 3.3171 -0.9844 3.5567 30 1 2.1186 0.7083 4.9165 31 1 0.6660 -0.3203 4.9164 32 1 3.8948 0.2944 6.4143 33 1 4.7760 -0.9480 8.3481 34 1 3.6737 -3.0216 9.0874 35 1 1.6886 -3.8545 7.8934 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118466193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:48 Heat of formation + Delta-G solvation = -122.808432 kcal Electronic energy + Delta-G solvation = -19377.795026 eV Core-core repulsion = 16061.898485 eV Total energy + Delta-G solvation = -3315.896542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.06859 -39.77675 -39.25946 -36.07641 -33.93898 -33.67991 -31.22122 -30.84388 -28.97399 -24.88736 -24.43593 -23.06165 -22.60315 -21.28631 -19.64983 -17.79085 -17.45822 -16.79716 -16.72459 -15.97551 -15.88663 -15.71928 -15.38665 -14.46430 -13.94523 -13.77292 -13.47709 -13.37024 -13.26324 -12.78183 -12.52573 -12.12495 -11.96136 -11.72114 -11.56829 -11.40566 -11.22428 -11.04796 -10.52442 -10.22817 -10.07723 -9.80958 -9.33286 -9.21820 -8.92999 -8.91437 -8.25687 -6.52896 -4.12044 0.83772 0.90002 3.16785 3.18432 3.35170 3.40023 3.44839 3.58571 4.00913 4.42154 4.44623 4.48748 4.67280 4.86978 5.00123 5.08068 5.12438 5.21985 5.41914 5.53360 5.64015 5.73308 5.82113 5.87888 6.04441 6.06676 6.12962 6.22488 6.45630 6.53343 6.59564 6.85994 7.10814 7.23738 7.81164 8.40453 8.75116 8.94377 9.57349 10.89913 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040549 B = 0.003687 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.365200 B = 7591.934448 C = 7662.042090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.601 4.601 5 H 0.075 0.925 6 C 0.034 3.966 7 N -0.899 5.899 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.471 3.529 13 O -0.507 6.507 14 O -0.368 6.368 15 C 0.069 3.931 16 C -0.079 4.079 17 C -0.114 4.114 18 C -0.085 4.085 19 C -0.130 4.130 20 C -0.095 4.095 21 C -0.154 4.154 22 C 0.104 3.896 23 F -0.134 7.134 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.270 0.730 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 1.832 23.994 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.638 4.638 5 H 0.093 0.907 6 C -0.172 4.172 7 N -0.533 5.533 8 Si 0.870 3.130 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.315 3.685 13 O -0.393 6.393 14 O -0.286 6.286 15 C -0.005 4.005 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.173 4.173 22 C 0.085 3.915 23 F -0.113 7.113 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.272 2.631 22.829 22.981 hybrid contribution 0.456 -1.562 1.132 1.982 sum 0.728 1.069 23.961 23.996 Atomic orbital electron populations 1.22154 0.96064 1.00912 1.01126 1.19056 0.94404 0.97017 0.88278 0.92661 1.21975 1.41259 1.11029 0.89564 0.90656 1.25773 0.94574 1.05108 0.91735 1.70845 1.41148 1.10129 1.31156 0.84093 0.77254 0.75172 0.76500 1.20793 1.19724 1.20730 1.24765 0.76854 0.83314 0.83586 1.90526 1.35743 1.26350 1.86672 1.86560 1.70610 1.55991 1.15442 1.22743 0.98813 0.95556 0.83399 1.20435 1.02318 0.99431 0.89445 1.19818 0.97428 0.95515 0.98729 1.21042 0.94366 1.00025 0.94835 1.21224 1.00542 0.95680 0.97370 1.21030 0.94717 0.96144 0.99383 1.21173 0.98662 1.01274 0.96162 1.17643 0.85954 0.94446 0.93502 1.91526 1.51086 1.88491 1.80162 0.91401 0.93387 0.94349 0.91954 0.91726 0.91581 0.89196 0.89423 0.84714 0.85197 0.85031 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.80 37.16 0.33 -2.84 16 2 C 0.03 0.79 2.32 -92.92 -0.22 0.57 16 3 H 0.06 1.29 6.80 -51.93 -0.35 0.93 16 4 C -0.60 -17.48 8.63 -34.45 -0.30 -17.78 16 5 H 0.08 2.46 7.02 -52.48 -0.37 2.09 16 6 C 0.03 0.97 5.29 -17.82 -0.09 0.88 16 7 N -0.90 -27.76 13.70 55.43 0.76 -27.00 16 8 Si 1.04 24.39 26.29 -169.99 -4.47 19.92 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -5.71 5.76 56.52 0.33 -5.39 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.47 11.18 7.25 36.01 0.26 11.44 16 13 O -0.51 -13.48 15.22 -18.75 -0.29 -13.77 16 14 O -0.37 -7.22 10.15 -39.26 -0.40 -7.62 16 15 C 0.07 1.13 5.45 37.16 0.20 1.33 16 16 C -0.08 -0.97 5.45 -27.88 -0.15 -1.13 16 17 C -0.11 -1.28 5.14 -104.55 -0.54 -1.82 16 18 C -0.08 -0.77 9.67 -39.59 -0.38 -1.16 16 19 C -0.13 -1.01 10.04 -39.58 -0.40 -1.40 16 20 C -0.09 -0.73 10.04 -39.60 -0.40 -1.13 16 21 C -0.15 -1.44 10.03 -39.52 -0.40 -1.84 16 22 C 0.10 1.22 7.24 -39.42 -0.29 0.94 16 23 F -0.13 -1.81 16.66 2.25 0.04 -1.77 16 24 H 0.07 1.50 4.88 -51.93 -0.25 1.24 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.27 8.41 8.73 -40.82 -0.36 8.05 16 28 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 29 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 30 H 0.09 0.96 8.00 -51.93 -0.42 0.54 16 31 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 32 H 0.13 0.98 8.04 -52.49 -0.42 0.56 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -33.07 305.46 -6.53 -39.60 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.41 Total: -0.01 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.37 Total: -13.94 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.76 Total: -27.00 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.68 Total: -21.39 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -4.47 Total: 19.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.07 -6.53 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118466193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.207 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds