Wall clock time and date at job start Mon Mar 30 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47170 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47132 * 180.02562 * 16 15 14 18 18 C 1.38226 * 120.01660 * 99.99973 * 17 16 15 19 19 C 1.38221 * 120.02596 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.05240 * 0.02562 * 19 18 17 21 21 C 1.38173 * 120.02486 * 0.02562 * 20 19 18 22 22 C 1.38442 * 120.01218 * 279.72407 * 17 16 15 23 23 F 1.35099 * 120.02397 * 359.97438 * 22 17 16 24 24 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 25 25 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 26 26 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 27 27 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 28 28 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 29 29 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 30 30 H 1.09000 * 109.47434 * 299.99691 * 16 15 14 31 31 H 1.08990 * 109.47482 * 60.00408 * 16 15 14 32 32 H 1.07997 * 119.98102 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.97278 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.98666 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.01032 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7554 -0.3189 4.8835 17 6 2.2952 -1.0802 6.0668 18 6 3.4102 -0.6148 6.7382 19 6 3.9050 -1.3126 7.8239 20 6 3.2859 -2.4770 8.2393 21 6 2.1718 -2.9447 7.5690 22 6 1.6710 -2.2429 6.4853 23 9 0.5776 -2.6954 5.8336 24 1 -0.3632 0.4127 -0.9411 25 1 -0.3633 -1.0214 0.1131 26 1 -0.3633 0.6087 0.8280 27 1 2.2477 -1.8382 -3.4691 28 1 1.8642 -2.0126 3.5570 29 1 3.3171 -0.9844 3.5567 30 1 2.1186 0.7083 4.9165 31 1 0.6660 -0.3203 4.9164 32 1 3.8948 0.2944 6.4143 33 1 4.7760 -0.9480 8.3481 34 1 3.6737 -3.0216 9.0874 35 1 1.6886 -3.8545 7.8934 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118466193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:48 Heat of formation + Delta-G solvation = -142.435338 kcal Electronic energy + Delta-G solvation = -19378.646113 eV Core-core repulsion = 16061.898485 eV Total energy + Delta-G solvation = -3316.747628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.98460 -41.50062 -40.06242 -37.76977 -35.99406 -34.71854 -33.28233 -31.54101 -29.97927 -26.88927 -25.84212 -24.19217 -23.76802 -22.19243 -21.50913 -19.59188 -18.65542 -18.42068 -17.86943 -17.44325 -17.11429 -16.67595 -16.59249 -15.64675 -15.27974 -15.14521 -14.93043 -14.63864 -14.29325 -14.17657 -13.96547 -13.62820 -13.28001 -13.22997 -12.98304 -12.71770 -12.46473 -12.38186 -12.07307 -11.97831 -11.62390 -11.57761 -11.19022 -11.04046 -10.44745 -9.97945 -9.68100 -8.85952 -6.46479 0.09880 0.21218 1.29156 1.50716 1.59633 1.71007 1.81056 2.50946 2.60867 3.02395 3.26108 3.59258 3.66838 3.86215 3.90274 4.05935 4.11795 4.27389 4.33332 4.36678 4.37924 4.59224 4.68304 4.73386 4.87733 4.95139 5.06425 5.07912 5.19404 5.33518 5.36920 5.43814 5.45683 5.73596 5.91629 5.99116 6.50630 6.90712 7.34372 8.56043 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040549 B = 0.003687 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.365200 B = 7591.934448 C = 7662.042090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.024 3.976 3 H 0.082 0.918 4 C -0.613 4.613 5 H 0.019 0.981 6 C -0.016 4.016 7 N -0.929 5.929 8 Si 1.084 2.916 9 H -0.287 1.287 10 H -0.226 1.226 11 H -0.257 1.257 12 C 0.474 3.526 13 O -0.549 6.549 14 O -0.354 6.354 15 C 0.067 3.933 16 C -0.067 4.067 17 C -0.133 4.133 18 C -0.088 4.088 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.162 4.162 22 C 0.070 3.930 23 F -0.154 7.154 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.250 0.750 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 4.467 26.758 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.004 3.996 3 H 0.100 0.900 4 C -0.651 4.651 5 H 0.038 0.962 6 C -0.214 4.214 7 N -0.564 5.564 8 Si 0.902 3.098 9 H -0.213 1.213 10 H -0.149 1.149 11 H -0.181 1.181 12 C 0.320 3.680 13 O -0.438 6.438 14 O -0.271 6.271 15 C -0.007 4.007 16 C -0.104 4.104 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.180 4.180 22 C 0.051 3.949 23 F -0.133 7.133 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.172 0.828 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.150 5.256 25.648 26.181 hybrid contribution 0.601 -2.508 0.422 2.613 sum 0.751 2.748 26.070 26.225 Atomic orbital electron populations 1.22061 0.93477 1.01145 1.02907 1.19053 0.96308 0.97485 0.86705 0.90037 1.22036 1.41026 1.09523 0.92488 0.96245 1.27517 0.93622 1.09277 0.90945 1.71000 1.43486 1.09496 1.32441 0.83657 0.79800 0.69250 0.77104 1.21308 1.14916 1.18143 1.24620 0.76031 0.82525 0.84873 1.90518 1.37660 1.28148 1.87468 1.86507 1.70043 1.55642 1.14887 1.23045 0.98917 0.95054 0.83714 1.20365 1.02211 1.00326 0.87517 1.19827 0.98770 0.95832 0.98990 1.21353 0.93492 1.00796 0.94973 1.21654 1.00968 0.95125 0.96579 1.21469 0.93531 0.96095 0.99576 1.21451 0.99337 1.01633 0.95618 1.18071 0.86303 0.95616 0.94875 1.91467 1.52204 1.88844 1.80787 0.91222 0.94655 0.90230 0.94147 0.93546 0.91496 0.86971 0.89762 0.82795 0.82064 0.81871 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 8.80 71.99 0.63 -5.08 16 2 C 0.02 1.16 2.32 -12.29 -0.03 1.13 16 3 H 0.08 3.53 6.80 -2.39 -0.02 3.52 16 4 C -0.61 -36.67 8.63 25.60 0.22 -36.45 16 5 H 0.02 1.34 7.02 -2.91 -0.02 1.32 16 6 C -0.02 -0.92 5.29 84.65 0.45 -0.48 16 7 N -0.93 -59.32 13.70 21.45 0.29 -59.03 16 8 Si 1.08 47.09 26.29 68.60 1.80 48.89 16 9 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.23 -8.19 5.76 99.48 0.57 -7.62 16 11 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 12 C 0.47 22.56 7.25 71.24 0.52 23.07 16 13 O -0.55 -30.31 15.22 21.97 0.33 -29.98 16 14 O -0.35 -13.50 10.15 -51.43 -0.52 -14.02 16 15 C 0.07 2.16 5.45 71.98 0.39 2.55 16 16 C -0.07 -1.57 5.45 29.85 0.16 -1.41 16 17 C -0.13 -2.85 5.14 -19.82 -0.10 -2.95 16 18 C -0.09 -1.38 9.67 22.26 0.22 -1.16 16 19 C -0.13 -1.49 10.04 22.27 0.22 -1.27 16 20 C -0.09 -1.09 10.04 22.26 0.22 -0.87 16 21 C -0.16 -2.81 10.03 22.31 0.22 -2.59 16 22 C 0.07 1.64 7.24 22.38 0.16 1.80 16 23 F -0.15 -4.31 16.66 44.97 0.75 -3.56 16 24 H 0.07 2.84 4.88 -2.39 -0.01 2.83 16 25 H 0.03 1.50 8.14 -2.39 -0.02 1.49 16 26 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16 28 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 30 H 0.11 2.09 8.00 -2.39 -0.02 2.07 16 31 H 0.08 2.01 7.94 -2.39 -0.02 1.99 16 32 H 0.15 1.73 8.04 -2.91 -0.02 1.70 16 33 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -76.48 305.46 6.87 -69.61 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.92 Total: 11.78 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.29 Total: -23.70 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.29 Total: -59.03 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.19 Total: -43.99 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.75 Total: -3.56 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.80 Total: 48.89 kcal Total: -76.48 6.87 -69.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118466193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.821 kcal (2) G-P(sol) polarization free energy of solvation -76.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds