Wall clock time and date at job start Mon Mar 30 2020 06:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48499 * 109.47046 * 239.99879 * 3 2 1 5 5 H 1.48499 * 109.47328 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47102 * 120.00064 * 3 2 1 7 7 C 1.37878 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47483 * 59.99361 * 9 7 2 11 11 O 1.42899 * 109.46812 * 299.99600 * 9 7 2 12 12 C 1.53002 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.50902 * 110.13948 * 184.99583 * 12 9 7 14 14 C 1.37903 * 132.17532 * 60.83979 * 13 12 9 15 15 C 1.38348 * 120.03709 * 180.29731 * 14 13 12 16 16 C 1.38344 * 120.09605 * 359.41101 * 15 14 13 17 17 C 1.37925 * 120.25096 * 0.60422 * 16 15 14 18 18 C 1.39197 * 107.53626 * 240.85582 * 13 12 9 19 19 C 1.48393 * 109.44852 * 359.97438 * 18 13 12 20 20 C 1.39619 * 131.19830 * 179.97438 * 19 18 13 21 21 C 1.37927 * 119.96394 * 179.97438 * 20 19 18 22 22 C 1.38348 * 120.25749 * 0.04633 * 21 20 19 23 23 C 1.38349 * 120.09351 * 359.97438 * 22 21 20 24 24 C 1.37903 * 120.04154 * 0.02562 * 23 22 21 25 25 H 0.97003 * 119.99970 * 359.97438 * 1 2 3 26 26 H 0.96705 * 114.00447 * 299.99825 * 11 9 7 27 27 H 1.09005 * 110.16616 * 306.69504 * 12 9 7 28 28 H 1.08002 * 119.97776 * 0.02562 * 14 13 12 29 29 H 1.08003 * 119.95436 * 179.69722 * 15 14 13 30 30 H 1.07998 * 119.87325 * 180.31787 * 16 15 14 31 31 H 1.08003 * 120.01417 * 179.71427 * 17 16 15 32 32 H 1.08003 * 120.01595 * 0.02562 * 20 19 18 33 33 H 1.07999 * 119.86981 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.95173 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.98039 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6245 -2.5571 -0.8896 11 8 0.4290 -2.5746 1.1671 12 6 2.2451 -3.6622 0.0005 13 6 1.5099 -4.9742 -0.1228 14 6 0.6843 -5.4843 -1.1025 15 6 0.1270 -6.7417 -0.9530 16 6 0.4063 -7.4948 0.1735 17 6 1.2308 -6.9923 1.1584 18 6 1.7917 -5.7217 1.0171 19 6 2.6967 -4.9488 1.9035 20 6 3.2565 -5.2611 3.1438 21 6 4.0822 -4.3543 3.7750 22 6 4.3582 -3.1341 3.1842 23 6 3.8067 -2.8177 1.9555 24 6 2.9800 -3.7183 1.3173 25 1 -0.4850 0.8401 0.0004 26 1 0.9209 -2.5291 1.9985 27 1 2.9541 -3.5505 -0.8199 28 1 0.4691 -4.9001 -1.9850 29 1 -0.5233 -7.1380 -1.7188 30 1 -0.0266 -8.4780 0.2841 31 1 1.4425 -7.5816 2.0383 32 1 3.0437 -6.2126 3.6085 33 1 4.5147 -4.5977 4.7342 34 1 5.0058 -2.4280 3.6826 35 1 4.0230 -1.8645 1.4962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535831175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:49 Heat of formation + Delta-G solvation = 5.684226 kcal Electronic energy + Delta-G solvation = -19707.344059 eV Core-core repulsion = 16827.788602 eV Total energy + Delta-G solvation = -2879.555457 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50180 -37.74405 -35.92491 -33.40862 -32.11686 -31.43016 -30.11344 -28.32008 -28.02514 -25.42709 -23.28168 -22.11331 -21.05083 -20.43236 -19.60935 -17.01823 -16.56243 -15.76484 -15.24916 -14.81373 -14.60317 -14.49202 -14.04563 -13.64522 -13.50048 -13.12929 -12.96609 -12.50777 -12.31406 -11.91712 -11.82630 -11.25485 -11.19465 -10.94662 -10.84888 -10.75143 -10.43601 -10.37202 -9.91939 -9.34071 -9.07947 -8.59068 -8.50766 -8.39646 -7.87285 -7.56077 -6.02834 -4.21225 1.10767 1.81018 1.86926 2.34347 3.26480 3.32637 3.33313 4.00686 4.36020 4.50896 4.81388 4.89493 5.23734 5.25460 5.27058 5.38365 5.42889 5.52920 5.67546 5.81137 5.91680 5.99272 6.12331 6.25316 6.31566 6.40680 6.46957 6.50898 6.64415 6.69250 6.82960 6.88547 6.95450 7.08627 7.27021 7.36429 7.41214 7.65868 7.80443 8.12432 8.79039 9.35808 9.54980 11.01254 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.007972 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.847651 B = 3511.642248 C = 4711.984433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.571 4.571 8 H 0.060 0.940 9 C 0.254 3.746 10 H 0.062 0.938 11 O -0.558 6.558 12 C -0.052 4.052 13 C -0.054 4.054 14 C -0.101 4.101 15 C -0.117 4.117 16 C -0.134 4.134 17 C -0.102 4.102 18 C -0.058 4.058 19 C -0.064 4.064 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.086 4.086 24 C -0.051 4.051 25 H 0.261 0.739 26 H 0.344 0.656 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -10.972 2.823 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.125 4.125 3 Si 0.713 3.287 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.608 4.608 8 H 0.078 0.922 9 C 0.196 3.804 10 H 0.079 0.921 11 O -0.360 6.360 12 C -0.071 4.071 13 C -0.054 4.054 14 C -0.119 4.119 15 C -0.135 4.135 16 C -0.152 4.152 17 C -0.120 4.120 18 C -0.058 4.058 19 C -0.064 4.064 20 C -0.124 4.124 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.104 4.104 24 C -0.051 4.051 25 H 0.071 0.929 26 H 0.188 0.812 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.604 -10.906 2.357 12.071 hybrid contribution 0.869 0.988 0.460 1.394 sum 5.473 -9.918 2.818 11.673 Atomic orbital electron populations 1.70064 1.05930 1.26578 1.46736 1.25017 0.94661 0.98999 0.93865 0.86776 0.79789 0.83370 0.78717 1.20119 1.21215 1.20067 1.21614 0.93120 0.91106 1.54999 0.92225 1.19238 0.86876 0.87731 0.86538 0.92082 1.86551 1.38072 1.96169 1.15215 1.20340 0.97621 0.94469 0.94621 1.20481 0.95821 0.95449 0.93699 1.20414 0.97040 0.95502 0.98936 1.21034 0.99962 0.94561 0.97962 1.20834 0.99832 0.99863 0.94703 1.20730 0.97825 0.94543 0.98877 1.19248 0.97712 0.93987 0.94896 1.19307 0.97709 0.94881 0.94492 1.20691 0.98111 0.99400 0.94207 1.20848 0.99761 0.94535 0.99826 1.21119 1.00506 0.96701 0.95695 1.20746 0.95798 0.99290 0.94592 1.20226 0.95539 0.93083 0.96282 0.92886 0.81234 0.88453 0.85960 0.86193 0.86409 0.86758 0.86870 0.86518 0.86251 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.94 12.84 55.43 0.71 -24.23 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.57 -14.88 7.73 -34.44 -0.27 -15.14 16 8 H 0.06 1.48 6.03 -52.49 -0.32 1.17 16 9 C 0.25 6.31 2.60 -27.88 -0.07 6.24 16 10 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 11 O -0.56 -14.77 12.42 -35.23 -0.44 -15.21 16 12 C -0.05 -1.10 2.71 -92.73 -0.25 -1.35 16 13 C -0.05 -1.06 5.39 -104.29 -0.56 -1.63 16 14 C -0.10 -1.77 10.04 -39.66 -0.40 -2.17 16 15 C -0.12 -1.75 10.05 -39.50 -0.40 -2.15 16 16 C -0.13 -1.92 10.02 -39.66 -0.40 -2.32 16 17 C -0.10 -1.60 10.09 -39.18 -0.40 -1.99 16 18 C -0.06 -1.07 6.20 -104.85 -0.65 -1.72 16 19 C -0.06 -1.17 6.20 -104.84 -0.65 -1.82 16 20 C -0.11 -1.66 10.09 -39.18 -0.40 -2.06 16 21 C -0.13 -1.91 10.02 -39.65 -0.40 -2.30 16 22 C -0.12 -1.90 10.05 -39.50 -0.40 -2.29 16 23 C -0.09 -1.59 9.32 -39.66 -0.37 -1.96 16 24 C -0.05 -1.00 4.22 -104.29 -0.44 -1.45 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.34 8.64 7.87 45.56 0.36 9.00 16 27 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 28 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 29 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.14 2.56 6.21 -52.49 -0.33 2.24 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -30.03 297.38 -9.63 -39.65 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -3.22 Total: 11.72 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -6.14 Total: -32.00 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.71 Total: -24.23 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.44 Total: -15.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.03 -9.63 -39.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535831175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.338 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds