Wall clock time and date at job start Mon Mar 30 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48499 * 109.47046 * 239.99879 * 3 2 1 5 5 H 1.48499 * 109.47328 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47102 * 120.00064 * 3 2 1 7 7 C 1.37878 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47483 * 59.99361 * 9 7 2 11 11 O 1.42899 * 109.46812 * 299.99600 * 9 7 2 12 12 C 1.53002 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.50902 * 110.13948 * 184.99583 * 12 9 7 14 14 C 1.37903 * 132.17532 * 60.83979 * 13 12 9 15 15 C 1.38348 * 120.03709 * 180.29731 * 14 13 12 16 16 C 1.38344 * 120.09605 * 359.41101 * 15 14 13 17 17 C 1.37925 * 120.25096 * 0.60422 * 16 15 14 18 18 C 1.39197 * 107.53626 * 240.85582 * 13 12 9 19 19 C 1.48393 * 109.44852 * 359.97438 * 18 13 12 20 20 C 1.39619 * 131.19830 * 179.97438 * 19 18 13 21 21 C 1.37927 * 119.96394 * 179.97438 * 20 19 18 22 22 C 1.38348 * 120.25749 * 0.04633 * 21 20 19 23 23 C 1.38349 * 120.09351 * 359.97438 * 22 21 20 24 24 C 1.37903 * 120.04154 * 0.02562 * 23 22 21 25 25 H 0.97003 * 119.99970 * 359.97438 * 1 2 3 26 26 H 0.96705 * 114.00447 * 299.99825 * 11 9 7 27 27 H 1.09005 * 110.16616 * 306.69504 * 12 9 7 28 28 H 1.08002 * 119.97776 * 0.02562 * 14 13 12 29 29 H 1.08003 * 119.95436 * 179.69722 * 15 14 13 30 30 H 1.07998 * 119.87325 * 180.31787 * 16 15 14 31 31 H 1.08003 * 120.01417 * 179.71427 * 17 16 15 32 32 H 1.08003 * 120.01595 * 0.02562 * 20 19 18 33 33 H 1.07999 * 119.86981 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.95173 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.98039 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6245 -2.5571 -0.8896 11 8 0.4290 -2.5746 1.1671 12 6 2.2451 -3.6622 0.0005 13 6 1.5099 -4.9742 -0.1228 14 6 0.6843 -5.4843 -1.1025 15 6 0.1270 -6.7417 -0.9530 16 6 0.4063 -7.4948 0.1735 17 6 1.2308 -6.9923 1.1584 18 6 1.7917 -5.7217 1.0171 19 6 2.6967 -4.9488 1.9035 20 6 3.2565 -5.2611 3.1438 21 6 4.0822 -4.3543 3.7750 22 6 4.3582 -3.1341 3.1842 23 6 3.8067 -2.8177 1.9555 24 6 2.9800 -3.7183 1.3173 25 1 -0.4850 0.8401 0.0004 26 1 0.9209 -2.5291 1.9985 27 1 2.9541 -3.5505 -0.8199 28 1 0.4691 -4.9001 -1.9850 29 1 -0.5233 -7.1380 -1.7188 30 1 -0.0266 -8.4780 0.2841 31 1 1.4425 -7.5816 2.0383 32 1 3.0437 -6.2126 3.6085 33 1 4.5147 -4.5977 4.7342 34 1 5.0058 -2.4280 3.6826 35 1 4.0230 -1.8645 1.4962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535831175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:48 Heat of formation + Delta-G solvation = -11.438556 kcal Electronic energy + Delta-G solvation = -19708.086558 eV Core-core repulsion = 16827.788602 eV Total energy + Delta-G solvation = -2880.297957 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86858 -38.98715 -37.73307 -34.89139 -34.22415 -32.80436 -31.37770 -29.76994 -29.57051 -27.18711 -24.61520 -23.80624 -22.30984 -21.72656 -21.16946 -19.01795 -17.82156 -17.05485 -16.75718 -16.65172 -16.47143 -15.80005 -15.35082 -15.31165 -14.88819 -14.70315 -14.21186 -13.94108 -13.92882 -13.27414 -13.13885 -13.09886 -12.89461 -12.78757 -12.34462 -12.23254 -11.98485 -11.74621 -11.61038 -11.02142 -10.67780 -10.52739 -10.30634 -9.75739 -9.38759 -8.83890 -8.12428 -6.37052 -0.16902 0.52949 0.58030 1.07899 1.39758 1.41222 1.48926 2.38376 2.73695 3.13321 3.21693 3.46159 3.62800 3.94955 4.08653 4.18540 4.20979 4.28102 4.31642 4.47003 4.61648 4.63480 4.73919 4.74623 4.87342 5.02839 5.07626 5.19046 5.22660 5.46570 5.51175 5.60137 5.62597 5.65597 5.74077 5.79132 5.96935 6.06466 6.14726 6.18313 6.71214 7.28795 7.46478 8.92185 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.007972 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.847651 B = 3511.642248 C = 4711.984433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.258 3.742 10 H 0.022 0.978 11 O -0.572 6.572 12 C -0.045 4.045 13 C -0.092 4.092 14 C -0.125 4.125 15 C -0.114 4.114 16 C -0.125 4.125 17 C -0.104 4.104 18 C -0.076 4.076 19 C -0.078 4.078 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.081 4.081 25 H 0.260 0.740 26 H 0.347 0.653 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 -12.948 4.847 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.610 4.610 8 H 0.085 0.915 9 C 0.200 3.800 10 H 0.040 0.960 11 O -0.375 6.375 12 C -0.064 4.064 13 C -0.092 4.092 14 C -0.143 4.143 15 C -0.132 4.132 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.076 4.076 19 C -0.078 4.078 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.081 4.081 25 H 0.069 0.931 26 H 0.191 0.809 27 H 0.101 0.899 28 H 0.133 0.867 29 H 0.170 0.830 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.165 0.835 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.756 -12.891 4.375 14.780 hybrid contribution 0.509 1.487 -0.165 1.580 sum 6.264 -11.403 4.211 13.675 Atomic orbital electron populations 1.70221 1.07730 1.27304 1.48684 1.25880 0.95400 1.02759 0.93548 0.85678 0.78441 0.78669 0.79257 1.19285 1.21289 1.18869 1.21954 0.93562 0.91840 1.53641 0.91527 1.18978 0.86821 0.89559 0.84595 0.96026 1.86494 1.38892 1.96420 1.15732 1.20026 0.96669 0.94014 0.95663 1.20538 0.97664 0.95331 0.95619 1.20639 0.97802 0.97102 0.98761 1.21435 0.99384 0.93230 0.99162 1.21350 0.98358 1.01160 0.93377 1.21152 0.97158 0.93553 1.00278 1.19492 0.98420 0.95218 0.94442 1.19521 0.98237 0.94371 0.95682 1.21101 0.97283 1.00880 0.92982 1.21321 0.98300 0.93281 1.00859 1.21452 0.99985 0.97892 0.94372 1.20774 0.96982 0.98687 0.96198 1.20193 0.97087 0.94763 0.96012 0.93103 0.80906 0.89937 0.86690 0.83024 0.82214 0.83676 0.83780 0.82363 0.83483 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.73 12.84 21.45 0.28 -54.45 16 2 C 0.03 1.47 5.40 84.65 0.46 1.93 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.57 -31.31 7.73 25.60 0.20 -31.11 16 8 H 0.07 3.47 6.03 -2.91 -0.02 3.45 16 9 C 0.26 13.72 2.60 29.85 0.08 13.80 16 10 H 0.02 1.30 8.14 -2.39 -0.02 1.29 16 11 O -0.57 -32.00 12.42 -148.98 -1.85 -33.85 16 12 C -0.05 -2.03 2.71 -12.16 -0.03 -2.07 16 13 C -0.09 -3.73 5.39 -19.65 -0.11 -3.83 16 14 C -0.12 -4.55 10.04 22.22 0.22 -4.32 16 15 C -0.11 -3.24 10.05 22.32 0.22 -3.01 16 16 C -0.12 -3.15 10.02 22.22 0.22 -2.93 16 17 C -0.10 -2.97 10.09 22.53 0.23 -2.75 16 18 C -0.08 -2.76 6.20 -20.01 -0.12 -2.88 16 19 C -0.08 -2.82 6.20 -20.00 -0.12 -2.94 16 20 C -0.10 -2.96 10.09 22.53 0.23 -2.74 16 21 C -0.12 -3.02 10.02 22.22 0.22 -2.80 16 22 C -0.12 -3.45 10.05 22.32 0.22 -3.22 16 23 C -0.11 -4.03 9.32 22.22 0.21 -3.82 16 24 C -0.08 -3.25 4.22 -19.65 -0.08 -3.33 16 25 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.35 18.33 7.87 -74.05 -0.58 17.75 16 27 H 0.08 3.71 8.14 -2.38 -0.02 3.69 16 28 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 29 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.12 4.61 6.21 -2.91 -0.02 4.59 16 Total: -1.00 -68.71 297.38 3.02 -65.69 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.53 Total: 33.29 kcal Atomic # 6 Polarization: -58.08 SS G_CDS: 2.04 Total: -56.04 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.28 Total: -54.45 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.85 Total: -33.85 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -68.71 3.02 -65.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535831175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.253 kcal (2) G-P(sol) polarization free energy of solvation -68.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds