Wall clock time and date at job start Mon Mar 30 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 11 11 O 1.42899 * 109.47451 * 59.99396 * 9 7 2 12 12 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 13 13 C 1.50907 * 110.13715 * 296.60387 * 12 9 7 14 14 C 1.37899 * 132.17495 * 60.83390 * 13 12 9 15 15 C 1.38348 * 120.04229 * 179.97438 * 14 13 12 16 16 C 1.38343 * 120.09085 * 0.04193 * 15 14 13 17 17 C 1.37923 * 120.25675 * 359.97438 * 16 15 14 18 18 C 1.39203 * 107.53536 * 240.85949 * 13 12 9 19 19 C 1.48392 * 109.44632 * 0.02562 * 18 13 12 20 20 C 1.39620 * 131.20328 * 180.02562 * 19 18 13 21 21 C 1.37918 * 119.96667 * 179.97438 * 20 19 18 22 22 C 1.38342 * 120.26170 * 0.02562 * 21 20 19 23 23 C 1.38339 * 120.08733 * 359.93264 * 22 21 20 24 24 C 1.37897 * 120.04429 * 0.08648 * 23 22 21 25 25 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 26 26 H 0.96695 * 113.99786 * 60.00449 * 11 9 7 27 27 H 1.08997 * 110.12460 * 58.33605 * 12 9 7 28 28 H 1.08002 * 119.97714 * 0.02562 * 14 13 12 29 29 H 1.08000 * 119.94943 * 180.02562 * 15 14 13 30 30 H 1.07997 * 119.86799 * 179.97438 * 16 15 14 31 31 H 1.07998 * 120.00905 * 180.02562 * 17 16 15 32 32 H 1.08001 * 120.01704 * 0.02562 * 20 19 18 33 33 H 1.08002 * 119.86674 * 179.97438 * 21 20 19 34 34 H 1.08001 * 119.95452 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.97730 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1664 12 6 2.2453 -3.6620 0.0018 13 6 3.0661 -3.6452 -1.2644 14 6 3.9305 -2.7109 -1.7950 15 6 4.5640 -2.9589 -2.9997 16 6 4.3311 -4.1438 -3.6748 17 6 3.4679 -5.0837 -3.1516 18 6 2.8252 -4.8402 -1.9363 19 6 1.8645 -5.6601 -1.1572 20 6 1.3167 -6.9199 -1.4066 21 6 0.4291 -7.4752 -0.5088 22 6 0.0778 -6.7884 0.6396 23 6 0.6173 -5.5402 0.8936 24 6 1.5052 -4.9771 0.0013 25 1 -0.4850 -0.8401 -0.0004 26 1 0.9222 -2.5299 -1.9974 27 1 2.8966 -3.5976 0.8734 28 1 4.1137 -1.7854 -1.2694 29 1 5.2410 -2.2264 -3.4137 30 1 4.8272 -4.3335 -4.6151 31 1 3.2894 -6.0075 -3.6817 32 1 1.5885 -7.4597 -2.3017 33 1 0.0061 -8.4496 -0.7035 34 1 -0.6180 -7.2278 1.3391 35 1 0.3421 -5.0058 1.7909 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535831184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:51 Heat of formation + Delta-G solvation = -16.721748 kcal Electronic energy + Delta-G solvation = -19779.139928 eV Core-core repulsion = 16898.612875 eV Total energy + Delta-G solvation = -2880.527053 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.95871 -39.04750 -38.03512 -35.02523 -34.24983 -32.88309 -31.44531 -29.64348 -29.61643 -26.87536 -24.63310 -23.98788 -22.36533 -21.77837 -21.36814 -19.35026 -17.95214 -17.26514 -17.08149 -16.62501 -15.91505 -15.81405 -15.41276 -15.37986 -15.02542 -14.78824 -14.38458 -14.20108 -13.77619 -13.56480 -13.29482 -13.19940 -12.64600 -12.44767 -12.36552 -12.08835 -11.95706 -11.79927 -11.72152 -11.17570 -10.63381 -10.55734 -10.20078 -9.81450 -9.45654 -8.89807 -8.58262 -6.42141 -0.22827 0.46040 0.53293 1.02338 1.51597 1.60118 1.76488 2.55431 2.67934 3.16007 3.18046 3.38895 3.55937 3.80769 3.99678 4.03724 4.12934 4.22802 4.27509 4.41557 4.48435 4.56528 4.59808 4.68698 4.81790 4.94901 5.01016 5.12115 5.17003 5.30667 5.41697 5.53997 5.59554 5.63380 5.69686 5.87530 5.91704 6.07941 6.13021 6.17709 6.56834 7.04354 7.51353 8.78118 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.008082 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.215644 B = 3463.684221 C = 4664.357888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.018 4.018 3 Si 1.113 2.887 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.642 4.642 8 H 0.064 0.936 9 C 0.239 3.761 10 H 0.019 0.981 11 O -0.584 6.584 12 C -0.039 4.039 13 C -0.082 4.082 14 C -0.108 4.108 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.105 4.105 18 C -0.079 4.079 19 C -0.074 4.074 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.093 4.093 25 H 0.265 0.735 26 H 0.354 0.646 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -13.235 -5.252 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.219 4.219 3 Si 0.934 3.066 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.680 4.680 8 H 0.082 0.918 9 C 0.182 3.818 10 H 0.036 0.964 11 O -0.388 6.388 12 C -0.057 4.057 13 C -0.082 4.082 14 C -0.125 4.125 15 C -0.137 4.137 16 C -0.136 4.136 17 C -0.123 4.123 18 C -0.079 4.079 19 C -0.074 4.074 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.093 4.093 25 H 0.076 0.924 26 H 0.199 0.801 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.167 0.833 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.171 0.829 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.636 -11.674 -4.779 14.253 hybrid contribution 0.237 -1.162 0.209 1.204 sum 6.874 -12.836 -4.570 15.261 Atomic orbital electron populations 1.70746 1.08173 1.31045 1.46150 1.27226 0.96443 1.06310 0.91936 0.83017 0.74374 0.71448 0.77725 1.19859 1.21320 1.19143 1.22832 0.94988 0.92772 1.57374 0.91833 1.19168 0.87335 0.91138 0.84122 0.96365 1.86412 1.39519 1.96594 1.16324 1.19865 0.95923 0.93514 0.96397 1.20166 0.96998 0.94978 0.96100 1.20857 0.96275 0.98342 0.97073 1.21481 0.99779 0.98372 0.94084 1.21341 0.98277 0.93195 1.00833 1.21105 0.96661 1.00786 0.93708 1.19520 0.97877 0.94417 0.96124 1.19490 0.97835 0.95342 0.94778 1.21167 0.97026 0.93292 1.00575 1.21367 0.97720 1.01226 0.93757 1.21437 0.99610 0.93549 0.98548 1.20620 0.97447 0.96887 0.99377 1.20505 0.97499 0.95314 0.96008 0.92440 0.80058 0.90242 0.86444 0.83330 0.82236 0.83684 0.83568 0.82088 0.82950 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.97 13.53 21.45 0.29 -57.68 16 2 C -0.02 -1.01 5.40 84.65 0.46 -0.55 16 3 Si 1.11 49.81 29.90 68.60 2.05 51.86 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.64 -35.33 7.72 25.60 0.20 -35.13 16 8 H 0.06 3.35 5.44 -2.91 -0.02 3.33 16 9 C 0.24 12.63 2.25 29.85 0.07 12.70 16 10 H 0.02 1.08 8.01 -2.38 -0.02 1.06 16 11 O -0.58 -31.91 11.62 -148.98 -1.73 -33.64 16 12 C -0.04 -1.74 2.78 -12.16 -0.03 -1.77 16 13 C -0.08 -3.34 4.38 -19.65 -0.09 -3.43 16 14 C -0.11 -4.04 9.16 22.22 0.20 -3.84 16 15 C -0.12 -3.47 10.05 22.32 0.22 -3.24 16 16 C -0.12 -2.99 10.02 22.22 0.22 -2.77 16 17 C -0.10 -2.96 10.09 22.53 0.23 -2.73 16 18 C -0.08 -2.85 6.20 -20.01 -0.12 -2.98 16 19 C -0.07 -2.69 6.20 -20.01 -0.12 -2.81 16 20 C -0.10 -2.91 10.09 22.53 0.23 -2.68 16 21 C -0.12 -3.06 10.02 22.22 0.22 -2.83 16 22 C -0.11 -3.17 10.05 22.32 0.22 -2.95 16 23 C -0.13 -4.51 10.03 22.21 0.22 -4.29 16 24 C -0.09 -3.77 5.27 -19.65 -0.10 -3.88 16 25 H 0.27 17.30 6.47 -92.71 -0.60 16.70 16 26 H 0.35 18.52 8.01 -74.06 -0.59 17.93 16 27 H 0.08 3.62 8.14 -2.39 -0.02 3.61 16 28 H 0.12 4.73 5.88 -2.91 -0.02 4.71 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 35 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -69.84 294.47 3.33 -66.51 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.69 Total: 36.12 kcal Atomic # 6 Polarization: -65.20 SS G_CDS: 2.03 Total: -63.18 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.29 Total: -57.68 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.73 Total: -33.64 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -69.84 3.33 -66.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535831184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.787 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds