Wall clock time and date at job start Mon Mar 30 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47605 * 2 1 4 4 N 1.46503 * 109.47326 * 120.00396 * 2 1 3 5 5 C 1.37167 * 119.99589 * 306.08271 * 4 2 1 6 6 H 1.08000 * 119.99970 * 43.69964 * 5 4 2 7 7 C 1.38881 * 120.00086 * 223.70009 * 5 4 2 8 8 N 1.31472 * 119.99770 * 6.88074 * 7 5 4 9 9 Si 1.86799 * 120.00234 * 186.88436 * 7 5 4 10 10 H 1.48499 * 109.47115 * 59.99712 * 9 7 5 11 11 H 1.48499 * 109.47282 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47091 * 300.00134 * 9 7 5 13 13 C 1.34773 * 120.00422 * 126.07737 * 4 2 1 14 14 O 1.21582 * 120.00280 * 185.58921 * 13 4 2 15 15 N 1.34776 * 119.99844 * 5.59811 * 13 4 2 16 16 C 1.39896 * 119.99979 * 185.29934 * 15 13 4 17 17 C 1.38920 * 120.06118 * 213.05696 * 16 15 13 18 18 C 1.38095 * 119.98384 * 180.02562 * 17 16 15 19 19 C 1.38273 * 120.09244 * 0.02562 * 18 17 16 20 20 C 1.38485 * 120.11705 * 359.97438 * 19 18 17 21 21 F 1.35106 * 119.99080 * 180.02562 * 20 19 18 22 22 C 1.38350 * 120.02279 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.46790 * 305.19825 * 1 2 3 24 24 H 1.08999 * 109.47287 * 65.19461 * 1 2 3 25 25 H 1.08992 * 109.47399 * 185.19813 * 1 2 3 26 26 H 1.09006 * 109.46551 * 240.00009 * 2 1 3 27 27 H 1.08997 * 109.47211 * 184.82133 * 3 2 1 28 28 H 1.09004 * 109.46757 * 304.81609 * 3 2 1 29 29 H 1.09001 * 109.46800 * 64.81634 * 3 2 1 30 30 H 0.96999 * 119.99835 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99855 * 5.29774 * 15 13 4 32 32 H 1.08003 * 120.00775 * 0.02562 * 17 16 15 33 33 H 1.07997 * 119.95426 * 180.02562 * 18 17 16 34 34 H 1.08000 * 119.93854 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.05241 * 180.27465 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5874 -0.2992 2.4381 6 1 0.5424 -0.0822 2.6034 7 6 2.4947 -0.1819 3.4829 8 7 3.7825 -0.3133 3.2531 9 14 1.8855 0.1626 5.2149 10 1 0.9795 -0.9315 5.6476 11 1 3.0439 0.2408 6.1407 12 1 1.1487 1.4517 5.2331 13 6 2.8910 -1.7107 1.0763 14 8 3.2181 -2.3495 2.0577 15 7 3.4013 -2.0226 -0.1316 16 6 4.2194 -3.1482 -0.2758 17 6 5.2546 -3.1420 -1.2022 18 6 6.0608 -4.2542 -1.3437 19 6 5.8390 -5.3749 -0.5647 20 6 4.8082 -5.3855 0.3600 21 9 4.5941 -6.4817 1.1201 22 6 3.9975 -4.2739 0.5057 23 1 -0.3633 0.5924 0.8398 24 1 -0.3634 0.4311 -0.9328 25 1 -0.3634 -1.0233 0.0931 26 1 1.8933 -0.5139 -0.8901 27 1 3.1267 1.4436 -0.0864 28 1 1.6080 1.9806 -0.8438 29 1 1.7490 1.9307 0.9300 30 1 4.4162 -0.2317 3.9829 31 1 3.2012 -1.4666 -0.9008 32 1 5.4288 -2.2675 -1.8116 33 1 6.8658 -4.2486 -2.0637 34 1 6.4709 -6.2434 -0.6777 35 1 3.1963 -4.2800 1.2298 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080213924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:19 Heat of formation + Delta-G solvation = -24.943387 kcal Electronic energy + Delta-G solvation = -20553.864712 eV Core-core repulsion = 17274.504668 eV Total energy + Delta-G solvation = -3279.360044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.46396 -39.72164 -38.01438 -35.47033 -33.86739 -32.07607 -30.31561 -29.98520 -28.74602 -26.52854 -24.91717 -22.66221 -22.03410 -20.92228 -19.54508 -18.14553 -17.22527 -15.94899 -15.81557 -15.62030 -15.15707 -15.08699 -14.68321 -13.87650 -13.71025 -13.43944 -13.12255 -13.06784 -12.82752 -12.34982 -11.90669 -11.69213 -11.57496 -11.49384 -11.16461 -10.98973 -10.89682 -10.74081 -10.52349 -10.24443 -10.04010 -9.55758 -8.81888 -8.52682 -8.22728 -7.49518 -7.14804 -6.03182 -3.84963 1.57866 1.70542 3.30698 3.37904 3.38596 3.72061 3.98966 4.37137 4.68589 4.82969 5.08273 5.19424 5.37978 5.40197 5.48810 5.50555 5.80401 5.85639 5.90513 5.97200 6.16197 6.33022 6.41417 6.45314 6.50211 6.54713 6.63603 6.77157 6.85120 7.02386 7.11696 7.55822 7.64569 7.75861 8.46378 9.10617 9.32865 9.67064 10.38726 11.03791 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.006852 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.930169 B = 4085.710270 C = 4931.751757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.129 3.871 3 C -0.150 4.150 4 N -0.463 5.463 5 C -0.327 4.327 6 H 0.080 0.920 7 C 0.059 3.941 8 N -0.832 5.832 9 Si 0.913 3.087 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.672 3.328 14 O -0.544 6.544 15 N -0.701 5.701 16 C 0.232 3.768 17 C -0.179 4.179 18 C -0.072 4.072 19 C -0.197 4.197 20 C 0.116 3.884 21 F -0.145 7.145 22 C -0.163 4.163 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.262 0.738 31 H 0.394 0.606 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -2.322 -10.889 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 C -0.208 4.208 4 N -0.189 5.189 5 C -0.455 4.455 6 H 0.098 0.902 7 C -0.151 4.151 8 N -0.466 5.466 9 Si 0.741 3.259 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.204 1.204 13 C 0.376 3.624 14 O -0.417 6.417 15 N -0.350 5.350 16 C 0.133 3.867 17 C -0.201 4.201 18 C -0.090 4.090 19 C -0.217 4.217 20 C 0.096 3.904 21 F -0.123 7.123 22 C -0.185 4.185 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.231 0.769 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.773 -2.709 -9.952 10.343 hybrid contribution -0.185 0.414 0.689 0.825 sum 0.589 -2.295 -9.263 9.562 Atomic orbital electron populations 1.22016 0.96039 1.01780 1.01005 1.20974 0.94298 0.93411 0.88927 1.22031 1.00578 0.96630 1.01553 1.42559 1.43106 1.28185 1.05016 1.18724 0.93014 1.48844 0.84947 0.90236 1.25309 0.94741 0.95421 0.99631 1.69883 1.00964 1.43331 1.32382 0.86260 0.78059 0.78386 0.83217 1.20150 1.21290 1.20355 1.15986 0.82735 0.82274 0.81415 1.90767 1.62548 1.52856 1.35557 1.43346 1.52240 1.27601 1.11794 1.17270 0.89511 0.85929 0.94028 1.20880 0.96078 0.99796 1.03357 1.20598 0.98307 0.91992 0.98152 1.20872 1.00233 1.00722 0.99874 1.17515 0.96998 0.83592 0.92272 1.91460 1.94462 1.51988 1.74409 1.21217 1.02909 0.90823 1.03530 0.91722 0.93350 0.93017 0.92704 0.93304 0.93812 0.91211 0.92782 0.76888 0.85750 0.85455 0.85604 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.89 37.16 0.33 -2.12 16 2 C 0.13 2.38 3.14 -67.93 -0.21 2.17 16 3 C -0.15 -2.62 9.31 37.16 0.35 -2.27 16 4 N -0.46 -11.09 2.47 -113.05 -0.28 -11.37 16 5 C -0.33 -8.65 8.00 -14.93 -0.12 -8.77 16 6 H 0.08 2.02 6.85 -52.49 -0.36 1.66 16 7 C 0.06 1.63 4.75 -17.47 -0.08 1.55 16 8 N -0.83 -24.58 11.04 55.49 0.61 -23.97 16 9 Si 0.91 21.69 29.56 -169.99 -5.02 16.67 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 C 0.67 16.88 7.11 -86.92 -0.62 16.26 16 14 O -0.54 -15.96 11.60 5.29 0.06 -15.90 16 15 N -0.70 -14.09 5.19 -14.24 -0.07 -14.16 16 16 C 0.23 4.44 6.28 -83.71 -0.53 3.91 16 17 C -0.18 -2.76 9.96 -39.38 -0.39 -3.15 16 18 C -0.07 -0.98 10.04 -39.62 -0.40 -1.37 16 19 C -0.20 -2.93 10.02 -39.48 -0.40 -3.32 16 20 C 0.12 2.10 7.30 -39.45 -0.29 1.81 16 21 F -0.14 -2.64 17.27 2.25 0.04 -2.61 16 22 C -0.16 -3.32 8.64 -39.33 -0.34 -3.66 16 23 H 0.06 1.11 7.19 -51.93 -0.37 0.74 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.88 5.65 -51.93 -0.29 0.59 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.36 7.66 -51.93 -0.40 0.97 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.39 6.60 6.35 -40.82 -0.26 6.34 16 32 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.15 3.47 6.38 -52.49 -0.34 3.14 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -32.27 297.02 -7.00 -39.27 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.11 Total: 6.56 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.70 Total: 1.03 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.26 Total: -49.50 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.06 Total: -15.90 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.27 -7.00 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.329 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds