Wall clock time and date at job start Mon Mar 30 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53123 * 109.52065 * 2 1 4 4 C 1.53171 * 109.20968 * 177.55908 * 3 2 1 5 5 N 1.46846 * 109.55862 * 300.86070 * 4 3 2 6 6 C 1.46894 * 111.00031 * 185.84094 * 5 4 3 7 7 C 1.50701 * 109.47293 * 45.79033 * 6 5 4 8 8 N 1.29515 * 124.56237 * 89.69886 * 7 6 5 9 9 C 1.30674 * 117.63108 * 179.76357 * 8 7 6 10 10 C 1.38583 * 113.55130 * 0.51690 * 9 8 7 11 11 C 1.40044 * 126.25543 * 179.76960 * 10 9 8 12 12 H 1.07998 * 120.00137 * 348.76344 * 11 10 9 13 13 C 1.40077 * 119.99814 * 168.76436 * 11 10 9 14 14 N 1.30858 * 119.99579 * 161.73464 * 13 11 10 15 15 Si 1.86799 * 120.00010 * 341.72862 * 13 11 10 16 16 H 1.48507 * 109.46866 * 85.79154 * 15 13 11 17 17 H 1.48500 * 109.47175 * 205.78643 * 15 13 11 18 18 H 1.48496 * 109.47544 * 325.79299 * 15 13 11 19 19 S 1.70882 * 124.55773 * 270.00062 * 7 6 5 20 20 C 1.46842 * 111.19665 * 61.73870 * 5 4 3 21 21 C 1.53034 * 109.52709 * 298.26082 * 20 5 4 22 22 H 1.08991 * 109.47117 * 300.12523 * 1 2 3 23 23 H 1.09001 * 109.46977 * 60.13246 * 1 2 3 24 24 H 1.09005 * 109.46444 * 180.12443 * 1 2 3 25 25 H 1.08994 * 109.52524 * 239.87651 * 2 1 3 26 26 H 1.08999 * 109.50459 * 297.56761 * 3 2 1 27 27 H 1.09001 * 109.50446 * 57.67728 * 3 2 1 28 28 H 1.09000 * 109.44069 * 180.83370 * 4 3 2 29 29 H 1.08997 * 109.43432 * 60.88595 * 4 3 2 30 30 H 1.08999 * 109.47008 * 165.78796 * 6 5 4 31 31 H 1.08996 * 109.46885 * 285.78764 * 6 5 4 32 32 H 1.08006 * 123.22694 * 180.28498 * 9 8 7 33 33 H 0.97009 * 119.99874 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.46398 * 178.24446 * 20 5 4 35 35 H 1.09005 * 109.45542 * 58.27206 * 20 5 4 36 36 H 1.08996 * 109.50465 * 299.23783 * 21 20 5 37 37 H 1.09007 * 109.50663 * 179.11849 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5721 1.4353 0.0616 5 7 4.0116 0.7400 1.2781 6 6 5.4685 0.8336 1.4407 7 6 5.9116 2.2525 1.1925 8 7 5.9925 3.1674 2.1056 9 6 6.3984 4.3544 1.7399 10 6 6.6766 4.4517 0.3858 11 6 7.1224 5.5955 -0.2880 12 1 7.1073 6.5547 0.2080 13 6 7.5877 5.4955 -1.6055 14 7 7.6651 6.5654 -2.3550 15 14 8.0980 3.8350 -2.2922 16 1 6.9043 3.1334 -2.8292 17 1 9.0875 4.0328 -3.3817 18 1 8.7077 3.0186 -1.2120 19 16 6.3679 2.8726 -0.3331 20 6 3.5710 -0.6607 1.2775 21 6 2.0418 -0.7159 1.2530 22 1 -0.3633 0.5157 0.8888 23 1 -0.3633 0.5118 -0.8912 24 1 -0.3632 -1.0277 0.0022 25 1 1.8943 -0.5155 -0.8885 26 1 1.7151 1.9451 -0.9108 27 1 1.6455 1.9698 0.8683 28 1 3.9399 2.4613 0.0767 29 1 3.9677 0.9206 -0.8140 30 1 5.7405 0.5402 2.4546 31 1 5.9571 0.1702 0.7271 32 1 6.5033 5.1815 2.4265 33 1 7.9877 6.4963 -3.2672 34 1 3.9379 -1.1573 2.1758 35 1 3.9667 -1.1655 0.3961 36 1 1.6456 -0.2233 2.1410 37 1 1.7153 -1.7558 1.2368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082418103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:15 Heat of formation + Delta-G solvation = 10.669736 kcal Electronic energy + Delta-G solvation = -18219.052935 eV Core-core repulsion = 15507.450368 eV Total energy + Delta-G solvation = -2711.602567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.95667 -37.53764 -34.68231 -34.04803 -30.80139 -30.37626 -28.83442 -26.22180 -23.90017 -23.06227 -22.23420 -21.12365 -19.49988 -18.67576 -17.91338 -15.98207 -15.73719 -15.36311 -14.54956 -14.41713 -14.15478 -13.89418 -13.38794 -13.28813 -13.05116 -12.80237 -12.26608 -12.04793 -11.96158 -11.85474 -11.54590 -11.37915 -11.37279 -10.96513 -10.93038 -10.61733 -10.47485 -10.08870 -10.00767 -9.81006 -9.48089 -8.20069 -7.98080 -7.81464 -7.49791 -7.30970 -4.71219 2.16808 2.49263 2.90673 3.00025 3.13377 3.53861 3.76401 4.00944 4.48681 4.85260 4.89177 4.96558 4.98546 5.36971 5.50802 5.59098 5.67633 5.68955 5.75529 5.78930 5.88588 5.94852 5.99807 6.16005 6.22989 6.23198 6.35072 6.37141 6.46842 6.61885 6.63566 6.78333 7.08818 7.53622 7.56458 7.63889 7.74646 8.01227 8.20198 9.49481 9.55666 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.005777 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.465292 B = 4845.687591 C = 5133.047197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.110 4.110 4 C 0.053 3.947 5 N -0.529 5.529 6 C 0.168 3.832 7 C -0.138 4.138 8 N -0.393 5.393 9 C -0.174 4.174 10 C 0.013 3.987 11 C -0.355 4.355 12 H 0.113 0.887 13 C 0.087 3.913 14 N -0.765 5.765 15 Si 0.825 3.175 16 H -0.224 1.224 17 H -0.250 1.250 18 H -0.210 1.210 19 S -0.062 6.062 20 C 0.054 3.946 21 C -0.108 4.108 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.146 0.854 33 H 0.297 0.703 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 -10.523 -0.948 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.148 4.148 4 C -0.076 4.076 5 N -0.255 5.255 6 C 0.038 3.962 7 C -0.405 4.405 8 N -0.104 5.104 9 C -0.328 4.328 10 C -0.109 4.109 11 C -0.391 4.391 12 H 0.131 0.869 13 C -0.140 4.140 14 N -0.387 5.387 15 Si 0.647 3.353 16 H -0.149 1.149 17 H -0.174 1.174 18 H -0.133 1.133 19 S 0.186 5.814 20 C -0.074 4.074 21 C -0.146 4.146 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.163 0.837 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.027 -10.822 -1.098 12.950 hybrid contribution 0.759 -0.099 -0.639 0.997 sum -6.268 -10.921 -1.736 12.711 Atomic orbital electron populations 1.21806 0.95487 1.01149 1.01705 1.21199 0.95220 0.96853 0.98066 1.21674 0.95543 0.95704 1.01832 1.22259 0.94533 1.01017 0.89759 1.62054 1.12921 1.12420 1.38077 1.20000 0.85707 0.90188 1.00266 1.24778 1.24453 0.99648 0.91584 1.65042 1.08827 1.00639 1.35871 1.21360 1.23918 0.95237 0.92335 1.23318 0.98520 0.93600 0.95483 1.19078 1.29229 0.94934 0.95867 0.86898 1.26377 0.92187 0.99378 0.96082 1.69622 1.28622 1.31558 1.08872 0.86640 0.83577 0.82376 0.82675 1.14864 1.17433 1.13319 1.83515 1.70894 1.09947 1.17092 1.22060 0.95561 0.89690 1.00078 1.21610 0.94977 0.99549 0.98435 0.92654 0.92914 0.93113 0.91900 0.91993 0.91289 0.88924 0.95783 0.90198 0.95297 0.83698 0.89140 0.91135 0.95610 0.91160 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.20 37.16 0.34 -1.16 16 2 C -0.09 -1.18 2.78 -90.49 -0.25 -1.43 16 3 C -0.11 -1.64 5.39 -26.58 -0.14 -1.78 16 4 C 0.05 0.95 4.65 -3.77 -0.02 0.93 16 5 N -0.53 -9.43 4.80 -236.04 -1.13 -10.56 16 6 C 0.17 3.27 5.85 -4.98 -0.03 3.25 16 7 C -0.14 -3.19 5.37 -13.25 -0.07 -3.26 16 8 N -0.39 -9.89 10.48 -10.84 -0.11 -10.01 16 9 C -0.17 -4.42 11.46 -17.92 -0.21 -4.63 16 10 C 0.01 0.32 5.89 -38.78 -0.23 0.09 16 11 C -0.35 -9.00 9.83 -38.22 -0.38 -9.38 16 12 H 0.11 2.91 8.06 -52.49 -0.42 2.49 16 13 C 0.09 2.09 5.51 -17.28 -0.10 1.99 16 14 N -0.77 -18.33 13.93 55.56 0.77 -17.55 16 15 Si 0.83 17.44 24.37 -169.99 -4.14 13.30 16 16 H -0.22 -4.68 6.74 56.52 0.38 -4.29 16 17 H -0.25 -4.88 7.11 56.52 0.40 -4.47 16 18 H -0.21 -4.60 6.57 56.52 0.37 -4.23 16 19 S -0.06 -1.44 15.03 -107.50 -1.62 -3.06 16 20 C 0.05 0.77 5.42 -3.84 -0.02 0.75 16 21 C -0.11 -1.33 5.38 -26.65 -0.14 -1.47 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.98 5.50 -51.93 -0.29 1.69 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.15 3.46 8.06 -52.48 -0.42 3.04 16 33 H 0.30 6.35 8.30 -40.82 -0.34 6.01 16 34 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 301.44 15.07 4.54 4.54 Total: -1.00 -26.36 301.44 -8.74 -35.10 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.81 Total: 4.34 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.24 Total: -16.09 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.47 Total: -38.12 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -4.14 Total: 13.30 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -1.62 Total: -3.06 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.36 -8.74 -35.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.766 kcal (2) G-P(sol) polarization free energy of solvation -26.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds