Wall clock time and date at job start Mon Mar 30 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53123 * 109.52065 * 2 1 4 4 C 1.53171 * 109.20968 * 177.55908 * 3 2 1 5 5 N 1.46846 * 109.55862 * 300.86070 * 4 3 2 6 6 C 1.46894 * 111.00031 * 185.84094 * 5 4 3 7 7 C 1.50701 * 109.47293 * 45.79033 * 6 5 4 8 8 N 1.29515 * 124.56237 * 89.69886 * 7 6 5 9 9 C 1.30674 * 117.63108 * 179.76357 * 8 7 6 10 10 C 1.38583 * 113.55130 * 0.51690 * 9 8 7 11 11 C 1.40044 * 126.25543 * 179.76960 * 10 9 8 12 12 H 1.07998 * 120.00137 * 348.76344 * 11 10 9 13 13 C 1.40077 * 119.99814 * 168.76436 * 11 10 9 14 14 N 1.30858 * 119.99579 * 161.73464 * 13 11 10 15 15 Si 1.86799 * 120.00010 * 341.72862 * 13 11 10 16 16 H 1.48507 * 109.46866 * 85.79154 * 15 13 11 17 17 H 1.48500 * 109.47175 * 205.78643 * 15 13 11 18 18 H 1.48496 * 109.47544 * 325.79299 * 15 13 11 19 19 S 1.70882 * 124.55773 * 270.00062 * 7 6 5 20 20 C 1.46842 * 111.19665 * 61.73870 * 5 4 3 21 21 C 1.53034 * 109.52709 * 298.26082 * 20 5 4 22 22 H 1.08991 * 109.47117 * 300.12523 * 1 2 3 23 23 H 1.09001 * 109.46977 * 60.13246 * 1 2 3 24 24 H 1.09005 * 109.46444 * 180.12443 * 1 2 3 25 25 H 1.08994 * 109.52524 * 239.87651 * 2 1 3 26 26 H 1.08999 * 109.50459 * 297.56761 * 3 2 1 27 27 H 1.09001 * 109.50446 * 57.67728 * 3 2 1 28 28 H 1.09000 * 109.44069 * 180.83370 * 4 3 2 29 29 H 1.08997 * 109.43432 * 60.88595 * 4 3 2 30 30 H 1.08999 * 109.47008 * 165.78796 * 6 5 4 31 31 H 1.08996 * 109.46885 * 285.78764 * 6 5 4 32 32 H 1.08006 * 123.22694 * 180.28498 * 9 8 7 33 33 H 0.97009 * 119.99874 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.46398 * 178.24446 * 20 5 4 35 35 H 1.09005 * 109.45542 * 58.27206 * 20 5 4 36 36 H 1.08996 * 109.50465 * 299.23783 * 21 20 5 37 37 H 1.09007 * 109.50663 * 179.11849 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5721 1.4353 0.0616 5 7 4.0116 0.7400 1.2781 6 6 5.4685 0.8336 1.4407 7 6 5.9116 2.2525 1.1925 8 7 5.9925 3.1674 2.1056 9 6 6.3984 4.3544 1.7399 10 6 6.6766 4.4517 0.3858 11 6 7.1224 5.5955 -0.2880 12 1 7.1073 6.5547 0.2080 13 6 7.5877 5.4955 -1.6055 14 7 7.6651 6.5654 -2.3550 15 14 8.0980 3.8350 -2.2922 16 1 6.9043 3.1334 -2.8292 17 1 9.0875 4.0328 -3.3817 18 1 8.7077 3.0186 -1.2120 19 16 6.3679 2.8726 -0.3331 20 6 3.5710 -0.6607 1.2775 21 6 2.0418 -0.7159 1.2530 22 1 -0.3633 0.5157 0.8888 23 1 -0.3633 0.5118 -0.8912 24 1 -0.3632 -1.0277 0.0022 25 1 1.8943 -0.5155 -0.8885 26 1 1.7151 1.9451 -0.9108 27 1 1.6455 1.9698 0.8683 28 1 3.9399 2.4613 0.0767 29 1 3.9677 0.9206 -0.8140 30 1 5.7405 0.5402 2.4546 31 1 5.9571 0.1702 0.7271 32 1 6.5033 5.1815 2.4265 33 1 7.9877 6.4963 -3.2672 34 1 3.9379 -1.1573 2.1758 35 1 3.9667 -1.1655 0.3961 36 1 1.6456 -0.2233 2.1410 37 1 1.7153 -1.7558 1.2368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082418103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:14 Heat of formation + Delta-G solvation = -5.718151 kcal Electronic energy + Delta-G solvation = -18219.763567 eV Core-core repulsion = 15507.450368 eV Total energy + Delta-G solvation = -2712.313199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30876 -39.31731 -36.25903 -35.57039 -32.43082 -31.72024 -30.23453 -27.65638 -25.62748 -24.43494 -23.66458 -22.50545 -20.72579 -20.48047 -19.73159 -17.79083 -17.33625 -16.92584 -15.92689 -15.68085 -15.44963 -15.18679 -15.09066 -14.81055 -14.62604 -14.29668 -13.75622 -13.63538 -13.24223 -13.18205 -13.09812 -12.86094 -12.65000 -12.49861 -12.31142 -12.09845 -11.72244 -11.53156 -11.32959 -11.17322 -11.12145 -10.12028 -9.85604 -9.36496 -9.26734 -9.09003 -6.64777 0.29960 0.74385 1.10097 1.19554 1.37803 1.73094 2.03776 2.17591 2.84316 3.18158 3.75056 3.90473 3.92892 3.94298 4.28666 4.36232 4.43421 4.54753 4.63125 4.63509 4.74631 4.81256 4.86794 4.88616 4.94076 4.98736 5.06040 5.16537 5.17351 5.26727 5.29254 5.37352 5.56270 5.65275 5.78862 6.07245 6.13148 6.26539 6.33246 7.60760 7.73987 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.005777 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.465292 B = 4845.687591 C = 5133.047197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.106 4.106 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.167 3.833 7 C -0.121 4.121 8 N -0.417 5.417 9 C -0.199 4.199 10 C -0.006 4.006 11 C -0.383 4.383 12 H 0.092 0.908 13 C 0.061 3.939 14 N -0.786 5.786 15 Si 0.862 3.138 16 H -0.218 1.218 17 H -0.215 1.215 18 H -0.223 1.223 19 S -0.039 6.039 20 C 0.052 3.948 21 C -0.103 4.103 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.024 0.976 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.146 0.854 33 H 0.312 0.688 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.062 0.938 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 -13.348 -1.939 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.144 4.144 4 C -0.073 4.073 5 N -0.267 5.267 6 C 0.037 3.963 7 C -0.390 4.390 8 N -0.129 5.129 9 C -0.351 4.351 10 C -0.128 4.128 11 C -0.419 4.419 12 H 0.110 0.890 13 C -0.164 4.164 14 N -0.408 5.408 15 Si 0.681 3.319 16 H -0.143 1.143 17 H -0.138 1.138 18 H -0.147 1.147 19 S 0.208 5.792 20 C -0.076 4.076 21 C -0.141 4.141 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.163 0.837 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.909 -13.602 -2.096 15.873 hybrid contribution 0.974 0.730 -0.286 1.251 sum -6.935 -12.871 -2.382 14.813 Atomic orbital electron populations 1.21760 0.93735 1.02383 1.01816 1.21182 0.96644 0.94724 0.98418 1.21651 0.93313 0.97882 1.01584 1.22152 0.96576 0.98707 0.89892 1.62022 1.11496 1.15072 1.38080 1.20109 0.87233 0.87821 1.01135 1.25620 1.21438 1.00784 0.91206 1.65104 1.10166 1.00911 1.36671 1.21499 1.25076 0.95785 0.92762 1.23401 0.98917 0.94740 0.95709 1.19066 1.31465 0.94323 0.97085 0.89018 1.26894 0.91804 1.02039 0.95644 1.69595 1.28693 1.32735 1.09800 0.86143 0.84117 0.78906 0.82774 1.14257 1.13802 1.14655 1.83317 1.70384 1.08488 1.16973 1.22216 0.96984 0.87289 1.01066 1.21615 0.93379 1.01183 0.97938 0.92898 0.92552 0.91297 0.91403 0.91411 0.92503 0.92871 0.95801 0.89495 0.93823 0.83651 0.87646 0.89836 0.94836 0.91893 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.20 71.98 0.66 -1.80 16 2 C -0.09 -2.00 2.78 -10.71 -0.03 -2.02 16 3 C -0.11 -3.02 5.39 30.69 0.17 -2.86 16 4 C 0.06 1.93 4.65 86.37 0.40 2.33 16 5 N -0.54 -18.33 4.80 -900.69 -4.32 -22.65 16 6 C 0.17 6.23 5.85 85.56 0.50 6.73 16 7 C -0.12 -5.55 5.37 88.45 0.47 -5.08 16 8 N -0.42 -21.27 10.48 -188.22 -1.97 -23.24 16 9 C -0.20 -10.45 11.46 84.95 0.97 -9.48 16 10 C -0.01 -0.31 5.89 22.79 0.13 -0.17 16 11 C -0.38 -20.17 9.83 23.15 0.23 -19.94 16 12 H 0.09 5.04 8.06 -2.91 -0.02 5.02 16 13 C 0.06 2.97 5.51 85.28 0.47 3.44 16 14 N -0.79 -37.71 13.93 21.86 0.30 -37.40 16 15 Si 0.86 34.81 24.37 68.60 1.67 36.49 16 16 H -0.22 -8.58 6.74 99.48 0.67 -7.91 16 17 H -0.22 -7.54 7.11 99.48 0.71 -6.84 16 18 H -0.22 -9.44 6.57 99.48 0.65 -8.79 16 19 S -0.04 -1.82 15.03 -56.49 -0.85 -2.67 16 20 C 0.05 1.31 5.42 86.33 0.47 1.78 16 21 C -0.10 -2.19 5.38 30.65 0.16 -2.03 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 2.27 5.50 -2.39 -0.01 2.26 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 32 H 0.15 7.33 8.06 -2.91 -0.02 7.30 16 33 H 0.31 13.04 8.30 -92.70 -0.77 12.27 16 34 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 35 H 0.03 0.81 8.14 -2.38 -0.02 0.80 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -56.95 301.44 0.39 -56.56 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.95 Total: 22.01 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 4.61 Total: -29.09 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -5.99 Total: -83.30 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 1.67 Total: 36.49 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -0.85 Total: -2.67 kcal Total: -56.95 0.39 -56.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.837 kcal (2) G-P(sol) polarization free energy of solvation -56.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds