Wall clock time and date at job start Mon Mar 30 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30460 * 122.56891 * 2 1 4 4 C 1.30647 * 117.51300 * 180.20801 * 3 2 1 5 5 N 1.37605 * 125.13162 * 179.80276 * 4 3 2 6 6 C 1.46841 * 111.00149 * 359.69619 * 5 4 3 7 7 C 1.53042 * 109.52629 * 174.16007 * 6 5 4 8 8 C 1.53117 * 109.27613 * 59.17734 * 7 6 5 9 9 C 1.53005 * 109.51971 * 182.37760 * 8 7 6 10 10 C 1.53120 * 109.16267 * 302.34396 * 8 7 6 11 11 C 1.46850 * 111.00188 * 235.48234 * 5 4 3 12 12 S 1.76087 * 109.73907 * 359.53815 * 4 3 2 13 13 C 1.38463 * 122.56682 * 179.69976 * 2 1 3 14 14 C 1.39911 * 126.07355 * 0.02562 * 13 2 1 15 15 H 1.07995 * 120.00655 * 359.97438 * 14 13 2 16 16 C 1.39910 * 119.99494 * 179.97438 * 14 13 2 17 17 N 1.31007 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99877 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47110 * 89.99683 * 18 16 14 20 20 H 1.48496 * 109.47015 * 210.00029 * 18 16 14 21 21 H 1.48501 * 109.46905 * 329.99793 * 18 16 14 22 22 H 1.08992 * 109.47573 * 270.29930 * 1 2 3 23 23 H 1.09006 * 109.46853 * 30.30276 * 1 2 3 24 24 H 1.09001 * 109.46819 * 150.29213 * 1 2 3 25 25 H 1.08998 * 109.46320 * 54.13945 * 6 5 4 26 26 H 1.08998 * 109.45897 * 294.17555 * 6 5 4 27 27 H 1.09003 * 109.49792 * 299.23877 * 7 6 5 28 28 H 1.08994 * 109.50340 * 179.12119 * 7 6 5 29 29 H 1.09002 * 109.52261 * 62.25263 * 8 7 6 30 30 H 1.09001 * 109.46902 * 59.87588 * 9 8 7 31 31 H 1.09001 * 109.46838 * 179.87147 * 9 8 7 32 32 H 1.09000 * 109.47234 * 299.87779 * 9 8 7 33 33 H 1.09002 * 109.50326 * 177.59202 * 10 8 7 34 34 H 1.08999 * 109.50267 * 297.71858 * 10 8 7 35 35 H 1.09002 * 109.46123 * 305.85895 * 11 5 4 36 36 H 1.08999 * 109.45959 * 65.82234 * 11 5 4 37 37 H 0.96993 * 120.00211 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2093 1.0994 0.0000 4 6 3.5106 0.9843 -0.0042 5 7 4.3986 2.0355 -0.0087 6 6 3.6909 3.3221 -0.0155 7 6 4.7016 4.4626 0.1263 8 6 5.6990 4.4013 -1.0338 9 6 6.7474 5.5030 -0.8654 10 6 6.3874 3.0336 -1.0330 11 6 5.3279 1.9346 -1.1413 12 16 3.9570 -0.7190 0.0045 13 6 2.2523 -1.1669 0.0061 14 6 1.7427 -2.4699 0.0124 15 1 0.6750 -2.6323 0.0133 16 6 2.6165 -3.5626 0.0177 17 7 3.9116 -3.3658 0.0162 18 14 1.9362 -5.3024 0.0254 19 1 1.7563 -5.7697 -1.3726 20 1 2.8849 -6.2017 0.7298 21 1 0.6265 -5.3186 0.7252 22 1 -0.3634 0.0054 1.0275 23 1 -0.3633 0.8873 -0.5186 24 1 -0.3633 -0.8926 -0.5093 25 1 2.9878 3.3543 0.8167 26 1 3.1478 3.4329 -0.9540 27 1 5.2355 4.3601 1.0711 28 1 4.1774 5.4180 0.1056 29 1 5.1704 4.5426 -1.9765 30 1 7.2754 5.3609 0.0775 31 1 7.4582 5.4571 -1.6904 32 1 6.2553 6.4756 -0.8632 33 1 7.0677 2.9681 -1.8822 34 1 6.9478 2.9088 -0.1065 35 1 5.8137 0.9590 -1.1267 36 1 4.7770 2.0519 -2.0745 37 1 4.5173 -4.1233 0.0194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082422200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:40 Heat of formation + Delta-G solvation = 4.564646 kcal Electronic energy + Delta-G solvation = -18148.088507 eV Core-core repulsion = 15436.221204 eV Total energy + Delta-G solvation = -2711.867303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.98214 -37.21753 -34.57255 -33.60489 -30.52057 -29.97913 -28.01751 -27.45929 -23.86053 -22.88952 -22.57159 -20.79264 -19.37032 -18.45602 -17.22754 -15.95045 -15.66903 -14.60214 -14.27722 -14.19046 -13.94655 -13.63205 -13.31727 -12.90876 -12.43623 -12.08492 -12.01218 -11.89856 -11.79212 -11.58352 -11.49877 -11.42702 -11.01801 -10.81283 -10.79009 -10.48939 -10.37058 -10.02984 -9.93761 -9.82995 -9.23087 -8.51343 -7.90519 -7.57092 -7.03721 -6.72612 -4.44381 2.46496 2.89090 2.94557 3.02486 3.22677 3.63386 3.88792 4.14857 4.77930 4.97824 5.01231 5.08903 5.14154 5.59093 5.68203 5.76369 5.81215 5.86599 5.94508 5.98981 6.12253 6.24592 6.29889 6.34301 6.39194 6.51742 6.59345 6.65387 6.71635 6.74590 6.80741 6.86846 7.24107 7.56167 7.68500 7.89013 8.13037 8.38025 8.59200 9.76103 9.78485 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.005213 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.261241 B = 5369.848096 C = 6027.927130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.144 4.144 3 N -0.457 5.457 4 C 0.018 3.982 5 N -0.431 5.431 6 C 0.076 3.924 7 C -0.112 4.112 8 C -0.095 4.095 9 C -0.143 4.143 10 C -0.108 4.108 11 C 0.057 3.943 12 S 0.116 5.884 13 C 0.002 3.998 14 C -0.371 4.371 15 H 0.099 0.901 16 C 0.048 3.952 17 N -0.780 5.780 18 Si 0.936 3.064 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.257 1.257 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 5.955 -1.820 7.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.278 4.278 3 N -0.173 5.173 4 C -0.343 4.343 5 N -0.153 5.153 6 C -0.055 4.055 7 C -0.150 4.150 8 C -0.114 4.114 9 C -0.201 4.201 10 C -0.146 4.146 11 C -0.071 4.071 12 S 0.366 5.634 13 C -0.122 4.122 14 C -0.407 4.407 15 H 0.117 0.883 16 C -0.172 4.172 17 N -0.407 5.407 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.181 1.181 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.229 5.901 -1.379 8.005 hybrid contribution -1.534 -0.770 -0.624 1.826 sum 3.696 5.132 -2.003 6.634 Atomic orbital electron populations 1.19643 0.90444 0.99692 0.99178 1.19528 0.95389 0.86099 1.26830 1.65482 1.04697 1.33193 1.13965 1.25003 0.90215 0.96340 1.22713 1.58999 1.16657 1.00083 1.39528 1.21787 0.94766 0.87581 1.01324 1.21710 0.97010 0.97677 0.98602 1.21197 0.96328 0.94927 0.98903 1.21805 0.98648 0.98119 1.01503 1.21638 0.97354 0.93657 1.01976 1.22234 0.94065 0.99088 0.91752 1.84998 1.07656 0.95022 1.75722 1.22830 0.93491 0.97035 0.98848 1.19109 0.95501 0.88420 1.37691 0.88309 1.26213 0.94535 1.03353 0.93132 1.68944 1.03312 1.34906 1.33551 0.85789 0.79912 0.78737 0.79580 1.18985 1.19730 1.18108 0.94627 0.94136 0.93079 0.90544 0.94896 0.91419 0.92073 0.91759 0.92698 0.93044 0.93037 0.91922 0.91191 0.90665 0.95129 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.67 10.01 36.00 0.36 -0.31 16 2 C -0.14 -3.78 6.84 -83.09 -0.57 -4.35 16 3 N -0.46 -11.99 9.35 -9.32 -0.09 -12.07 16 4 C 0.02 0.45 6.89 -87.86 -0.61 -0.15 16 5 N -0.43 -9.13 4.70 -173.86 -0.82 -9.94 16 6 C 0.08 1.44 4.82 -3.83 -0.02 1.42 16 7 C -0.11 -1.64 5.38 -26.65 -0.14 -1.78 16 8 C -0.09 -1.26 2.79 -90.49 -0.25 -1.51 16 9 C -0.14 -1.53 9.21 37.16 0.34 -1.19 16 10 C -0.11 -1.56 5.38 -26.65 -0.14 -1.70 16 11 C 0.06 1.05 5.34 -3.83 -0.02 1.03 16 12 S 0.12 2.95 19.57 -107.50 -2.10 0.85 16 13 C 0.00 0.04 6.23 -38.87 -0.24 -0.20 16 14 C -0.37 -9.33 8.88 -38.33 -0.34 -9.67 16 15 H 0.10 2.33 6.85 -52.49 -0.36 1.97 16 16 C 0.05 1.13 5.50 -17.28 -0.09 1.03 16 17 N -0.78 -18.81 10.74 55.55 0.60 -18.21 16 18 Si 0.94 17.37 29.56 -169.99 -5.03 12.34 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 1.06 7.05 -51.93 -0.37 0.70 16 25 H 0.08 1.57 7.86 -51.93 -0.41 1.16 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.44 7.35 -51.93 -0.38 1.06 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.30 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -28.04 307.61 -10.25 -38.29 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.72 Total: 1.49 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -1.73 Total: -17.39 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.31 Total: -40.23 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.10 Total: 0.85 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.04 -10.25 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082422200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.855 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds