Wall clock time and date at job start Mon Mar 30 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30460 * 122.56891 * 2 1 4 4 C 1.30647 * 117.51300 * 180.20801 * 3 2 1 5 5 N 1.37605 * 125.13162 * 179.80276 * 4 3 2 6 6 C 1.46841 * 111.00149 * 359.69619 * 5 4 3 7 7 C 1.53042 * 109.52629 * 174.16007 * 6 5 4 8 8 C 1.53117 * 109.27613 * 59.17734 * 7 6 5 9 9 C 1.53005 * 109.51971 * 182.37760 * 8 7 6 10 10 C 1.53120 * 109.16267 * 302.34396 * 8 7 6 11 11 C 1.46850 * 111.00188 * 235.48234 * 5 4 3 12 12 S 1.76087 * 109.73907 * 359.53815 * 4 3 2 13 13 C 1.38463 * 122.56682 * 179.69976 * 2 1 3 14 14 C 1.39911 * 126.07355 * 0.02562 * 13 2 1 15 15 H 1.07995 * 120.00655 * 359.97438 * 14 13 2 16 16 C 1.39910 * 119.99494 * 179.97438 * 14 13 2 17 17 N 1.31007 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99877 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47110 * 89.99683 * 18 16 14 20 20 H 1.48496 * 109.47015 * 210.00029 * 18 16 14 21 21 H 1.48501 * 109.46905 * 329.99793 * 18 16 14 22 22 H 1.08992 * 109.47573 * 270.29930 * 1 2 3 23 23 H 1.09006 * 109.46853 * 30.30276 * 1 2 3 24 24 H 1.09001 * 109.46819 * 150.29213 * 1 2 3 25 25 H 1.08998 * 109.46320 * 54.13945 * 6 5 4 26 26 H 1.08998 * 109.45897 * 294.17555 * 6 5 4 27 27 H 1.09003 * 109.49792 * 299.23877 * 7 6 5 28 28 H 1.08994 * 109.50340 * 179.12119 * 7 6 5 29 29 H 1.09002 * 109.52261 * 62.25263 * 8 7 6 30 30 H 1.09001 * 109.46902 * 59.87588 * 9 8 7 31 31 H 1.09001 * 109.46838 * 179.87147 * 9 8 7 32 32 H 1.09000 * 109.47234 * 299.87779 * 9 8 7 33 33 H 1.09002 * 109.50326 * 177.59202 * 10 8 7 34 34 H 1.08999 * 109.50267 * 297.71858 * 10 8 7 35 35 H 1.09002 * 109.46123 * 305.85895 * 11 5 4 36 36 H 1.08999 * 109.45959 * 65.82234 * 11 5 4 37 37 H 0.96993 * 120.00211 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2093 1.0994 0.0000 4 6 3.5106 0.9843 -0.0042 5 7 4.3986 2.0355 -0.0087 6 6 3.6909 3.3221 -0.0155 7 6 4.7016 4.4626 0.1263 8 6 5.6990 4.4013 -1.0338 9 6 6.7474 5.5030 -0.8654 10 6 6.3874 3.0336 -1.0330 11 6 5.3279 1.9346 -1.1413 12 16 3.9570 -0.7190 0.0045 13 6 2.2523 -1.1669 0.0061 14 6 1.7427 -2.4699 0.0124 15 1 0.6750 -2.6323 0.0133 16 6 2.6165 -3.5626 0.0177 17 7 3.9116 -3.3658 0.0162 18 14 1.9362 -5.3024 0.0254 19 1 1.7563 -5.7697 -1.3726 20 1 2.8849 -6.2017 0.7298 21 1 0.6265 -5.3186 0.7252 22 1 -0.3634 0.0054 1.0275 23 1 -0.3633 0.8873 -0.5186 24 1 -0.3633 -0.8926 -0.5093 25 1 2.9878 3.3543 0.8167 26 1 3.1478 3.4329 -0.9540 27 1 5.2355 4.3601 1.0711 28 1 4.1774 5.4180 0.1056 29 1 5.1704 4.5426 -1.9765 30 1 7.2754 5.3609 0.0775 31 1 7.4582 5.4571 -1.6904 32 1 6.2553 6.4756 -0.8632 33 1 7.0677 2.9681 -1.8822 34 1 6.9478 2.9088 -0.1065 35 1 5.8137 0.9590 -1.1267 36 1 4.7770 2.0519 -2.0745 37 1 4.5173 -4.1233 0.0194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082422200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:40 Heat of formation + Delta-G solvation = -10.636011 kcal Electronic energy + Delta-G solvation = -18148.747657 eV Core-core repulsion = 15436.221204 eV Total energy + Delta-G solvation = -2712.526453 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54187 -38.96890 -36.24784 -35.16241 -31.99560 -31.66366 -29.79816 -28.78647 -25.70698 -24.33408 -24.02991 -22.36769 -20.71713 -20.26524 -19.05812 -17.68933 -17.50343 -16.17236 -15.85047 -15.49090 -15.36332 -14.89389 -14.86771 -14.59690 -13.93967 -13.79383 -13.61407 -13.38258 -13.27870 -13.18145 -12.93367 -12.73086 -12.59825 -12.39381 -12.15800 -12.00259 -11.63987 -11.49049 -11.34320 -11.19103 -11.10827 -10.29500 -9.85275 -9.51422 -8.85574 -8.65482 -6.35973 0.61544 1.29817 1.37192 1.49820 1.54992 1.85213 2.14710 2.30211 3.03845 3.26374 3.84173 3.88743 3.95786 4.22029 4.35271 4.43976 4.54362 4.62038 4.78632 4.82153 4.82791 4.88575 4.92191 4.95804 5.01036 5.03659 5.08707 5.15164 5.25272 5.26552 5.37204 5.42059 5.56156 5.72486 5.94609 6.13123 6.25778 6.49302 6.72903 7.81917 8.00817 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.005213 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.261241 B = 5369.848096 C = 6027.927130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.180 4.180 3 N -0.476 5.476 4 C 0.016 3.984 5 N -0.438 5.438 6 C 0.080 3.920 7 C -0.103 4.103 8 C -0.092 4.092 9 C -0.136 4.136 10 C -0.101 4.101 11 C 0.058 3.942 12 S 0.092 5.908 13 C -0.028 4.028 14 C -0.393 4.393 15 H 0.109 0.891 16 C 0.011 3.989 17 N -0.803 5.803 18 Si 1.013 2.987 19 H -0.257 1.257 20 H -0.263 1.263 21 H -0.251 1.251 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.016 0.984 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.018 0.982 37 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 5.976 -2.068 7.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.313 4.313 3 N -0.193 5.193 4 C -0.345 4.345 5 N -0.161 5.161 6 C -0.050 4.050 7 C -0.141 4.141 8 C -0.111 4.111 9 C -0.193 4.193 10 C -0.138 4.138 11 C -0.070 4.070 12 S 0.342 5.658 13 C -0.151 4.151 14 C -0.429 4.429 15 H 0.127 0.873 16 C -0.208 4.208 17 N -0.430 5.430 18 Si 0.832 3.168 19 H -0.182 1.182 20 H -0.187 1.187 21 H -0.174 1.174 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.913 5.953 -1.630 8.548 hybrid contribution -1.689 -0.778 -0.544 1.938 sum 4.224 5.175 -2.173 7.025 Atomic orbital electron populations 1.19623 0.88297 1.00427 0.99803 1.20128 0.97154 0.86105 1.27900 1.65556 1.05271 1.33448 1.15064 1.25452 0.90466 0.97087 1.21520 1.59033 1.16263 0.99993 1.40776 1.21804 0.95644 0.88124 0.99449 1.21686 0.96393 0.96532 0.99472 1.21190 0.96650 0.95220 0.98035 1.21735 0.97973 0.97324 1.02295 1.21642 0.96272 0.92701 1.03218 1.22294 0.94242 1.00364 0.90109 1.84827 1.08120 0.96158 1.76684 1.23221 0.93830 0.98135 0.99921 1.19506 0.96504 0.88639 1.38202 0.87307 1.27260 0.94485 1.07357 0.91653 1.68982 1.04622 1.36760 1.32681 0.84680 0.79415 0.72821 0.79934 1.18176 1.18698 1.17438 0.93951 0.93507 0.92113 0.92830 0.96525 0.91198 0.89782 0.91935 0.92305 0.91693 0.91806 0.89393 0.90948 0.91975 0.96382 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.99 10.01 71.24 0.71 -0.28 16 2 C -0.18 -9.70 6.84 42.82 0.29 -9.41 16 3 N -0.48 -25.89 9.35 -183.39 -1.71 -27.61 16 4 C 0.02 0.85 6.89 179.38 1.24 2.08 16 5 N -0.44 -18.98 4.70 -703.96 -3.31 -22.28 16 6 C 0.08 3.07 4.82 86.33 0.42 3.49 16 7 C -0.10 -2.85 5.38 30.65 0.16 -2.69 16 8 C -0.09 -2.23 2.79 -10.71 -0.03 -2.26 16 9 C -0.14 -2.41 9.21 71.98 0.66 -1.75 16 10 C -0.10 -2.72 5.38 30.65 0.16 -2.55 16 11 C 0.06 2.15 5.34 86.33 0.46 2.61 16 12 S 0.09 4.88 19.57 -56.49 -1.11 3.77 16 13 C -0.03 -1.52 6.23 22.73 0.14 -1.38 16 14 C -0.39 -19.94 8.88 23.08 0.20 -19.73 16 15 H 0.11 5.13 6.85 -2.91 -0.02 5.11 16 16 C 0.01 0.49 5.50 85.22 0.47 0.96 16 17 N -0.80 -38.81 10.74 21.83 0.23 -38.58 16 18 Si 1.01 34.37 29.56 68.60 2.03 36.40 16 19 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 20 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 21 H -0.25 -8.22 7.11 99.48 0.71 -7.52 16 22 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 23 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.06 2.54 7.05 -2.39 -0.02 2.52 16 25 H 0.05 2.27 7.86 -2.39 -0.02 2.25 16 26 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 2.44 7.35 -2.39 -0.02 2.42 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.31 13.19 8.30 -92.71 -0.77 12.43 16 Total: -1.00 -62.22 307.61 2.08 -60.15 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.04 Total: 19.08 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 4.90 Total: -30.93 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -4.79 Total: -88.47 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.11 Total: 3.77 kcal Total: -62.22 2.08 -60.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082422200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.511 kcal (2) G-P(sol) polarization free energy of solvation -62.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds