Wall clock time and date at job start Mon Mar 30 2020 07:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 111.00060 * 2 1 4 4 C 1.46899 * 110.99926 * 123.94995 * 2 1 3 5 5 C 1.53005 * 109.46856 * 66.04820 * 4 2 1 6 6 C 1.50697 * 109.47018 * 179.97438 * 5 4 2 7 7 N 1.29526 * 124.56284 * 89.99589 * 6 5 4 8 8 C 1.30678 * 117.63195 * 180.02562 * 7 6 5 9 9 C 1.50694 * 123.22310 * 179.97438 * 8 7 6 10 10 C 1.53005 * 117.50131 * 8.64951 * 9 8 7 11 11 C 1.53005 * 60.00038 * 252.50897 * 10 9 8 12 12 C 1.38590 * 113.55163 * 0.02562 * 8 7 6 13 13 C 1.40032 * 126.25188 * 179.73766 * 12 8 7 14 14 H 1.07998 * 120.00503 * 353.29804 * 13 12 8 15 15 C 1.40081 * 119.99999 * 173.30587 * 13 12 8 16 16 N 1.30865 * 119.99725 * 6.30559 * 15 13 12 17 17 Si 1.86799 * 120.00084 * 186.30817 * 15 13 12 18 18 H 1.48498 * 109.47011 * 94.98163 * 17 15 13 19 19 H 1.48495 * 109.47037 * 214.98530 * 17 15 13 20 20 H 1.48501 * 109.46818 * 334.98103 * 17 15 13 21 21 S 1.70882 * 124.56079 * 270.05192 * 6 5 4 22 22 H 1.09004 * 109.47175 * 296.04623 * 1 2 3 23 23 H 1.09004 * 109.47384 * 56.04677 * 1 2 3 24 24 H 1.08994 * 109.47310 * 176.04897 * 1 2 3 25 25 H 1.08994 * 109.47345 * 183.95565 * 3 2 1 26 26 H 1.09002 * 109.46947 * 303.95206 * 3 2 1 27 27 H 1.08995 * 109.46897 * 63.94842 * 3 2 1 28 28 H 1.08997 * 109.47430 * 306.04956 * 4 2 1 29 29 H 1.08999 * 109.46908 * 186.04288 * 4 2 1 30 30 H 1.08997 * 109.46990 * 59.99866 * 5 4 2 31 31 H 1.08990 * 109.47151 * 299.99602 * 5 4 2 32 32 H 1.08997 * 115.55059 * 154.34947 * 9 8 7 33 33 H 1.09003 * 117.49440 * 359.97438 * 10 9 8 34 34 H 1.08997 * 117.50058 * 145.01762 * 10 9 8 35 35 H 1.08996 * 117.49472 * 252.51070 * 11 10 9 36 36 H 1.08998 * 117.51960 * 107.47127 * 11 10 9 37 37 H 0.96993 * 120.00006 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1720 -3.0284 2.1371 7 7 1.5258 -3.2475 3.2380 8 6 2.1258 -3.9478 4.1639 9 6 1.4922 -4.2768 5.4910 10 6 0.0118 -3.9348 5.6713 11 6 1.0809 -3.1067 6.3870 12 6 3.4011 -4.3579 3.8088 13 6 4.2777 -5.1131 4.5976 14 1 4.0236 -5.3390 5.6227 15 6 5.4845 -5.5755 4.0571 16 7 5.8508 -5.2002 2.8581 17 14 6.5708 -6.7278 5.0478 18 1 6.2735 -8.1334 4.6722 19 1 7.9975 -6.4304 4.7627 20 1 6.3050 -6.5356 6.4961 21 16 3.7206 -3.7492 2.1862 22 1 -0.3634 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0827 1.3433 -0.0709 26 1 1.5898 1.9164 -0.8525 27 1 1.7043 1.8724 0.9232 28 1 1.5611 -0.3872 2.0628 29 1 3.0797 -0.6610 1.1756 30 1 2.0658 -2.6213 0.0452 31 1 0.5473 -2.3475 0.9324 32 1 1.8638 -5.1779 5.9788 33 1 -0.5037 -3.4714 4.8300 34 1 -0.5908 -4.6110 6.2777 35 1 1.1817 -3.2382 7.4643 36 1 1.2691 -2.0990 6.0167 37 1 6.6862 -5.5207 2.4837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082437295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:07 Heat of formation + Delta-G solvation = 38.483280 kcal Electronic energy + Delta-G solvation = -17778.611956 eV Core-core repulsion = 15068.215475 eV Total energy + Delta-G solvation = -2710.396481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.18108 -37.23964 -35.25646 -34.29818 -31.43137 -29.14079 -27.40244 -25.78632 -24.03915 -22.58021 -21.52533 -21.11596 -19.83579 -18.69191 -16.88584 -15.77958 -15.59267 -15.05405 -14.88316 -14.55381 -14.40306 -13.40988 -13.21552 -12.79239 -12.66358 -12.26217 -12.09953 -11.89739 -11.57568 -11.53360 -11.45580 -11.07844 -11.00205 -10.80513 -10.73171 -10.55386 -10.17738 -9.85036 -9.72151 -9.50720 -9.09215 -8.12711 -7.83937 -7.72935 -7.06158 -7.00115 -4.57209 2.46530 2.88017 2.93821 3.02366 3.43266 3.62370 3.99036 4.05032 4.31332 4.66423 5.17638 5.31578 5.39573 5.55485 5.64164 5.66576 5.76693 5.87847 5.91876 5.94194 6.01694 6.05859 6.11485 6.25628 6.33002 6.51380 6.55804 6.69595 6.72455 6.85294 6.96234 7.10742 7.28963 7.30091 7.32040 7.70858 7.93222 8.32406 8.34472 9.73037 9.79643 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.006068 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.563620 B = 4613.579793 C = 5786.029108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.550 5.550 3 C 0.026 3.974 4 C 0.064 3.936 5 C 0.002 3.998 6 C -0.179 4.179 7 N -0.422 5.422 8 C -0.118 4.118 9 C -0.022 4.022 10 C -0.180 4.180 11 C -0.187 4.187 12 C 0.007 3.993 13 C -0.366 4.366 14 H 0.099 0.901 15 C 0.049 3.951 16 N -0.772 5.772 17 Si 0.935 3.065 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.257 1.257 21 S 0.123 5.877 22 H 0.022 0.978 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 4.077 -1.305 4.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.039 4.039 6 C -0.449 4.449 7 N -0.134 5.134 8 C -0.253 4.253 9 C -0.043 4.043 10 C -0.218 4.218 11 C -0.225 4.225 12 C -0.116 4.116 13 C -0.403 4.403 14 H 0.116 0.884 15 C -0.173 4.173 16 N -0.398 5.398 17 Si 0.758 3.242 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.180 1.180 21 S 0.376 5.624 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.648 4.101 -2.697 5.178 hybrid contribution -0.147 -0.259 1.983 2.005 sum -1.795 3.843 -0.714 4.301 Atomic orbital electron populations 1.22403 0.87894 1.02470 0.99747 1.62040 1.07769 1.13241 1.44345 1.22346 1.00770 0.89284 0.99881 1.22212 0.99884 0.94166 0.90165 1.19473 0.99497 0.91177 0.93782 1.25610 1.01872 1.17740 0.99641 1.64870 1.36605 1.11956 0.99984 1.18902 0.93498 1.15553 0.97344 1.19839 0.94472 0.97046 0.92923 1.22788 0.92476 1.03758 1.02770 1.22874 1.05501 0.97276 0.96824 1.22996 0.95591 0.97535 0.95517 1.19191 0.99215 1.22854 0.99088 0.88354 1.26242 0.98649 0.96965 0.95420 1.69042 1.21664 1.34710 1.14382 0.85806 0.78257 0.79672 0.80487 1.18974 1.19685 1.18045 1.84034 1.13470 1.49641 1.15255 0.95912 0.92050 0.90922 0.91462 0.91850 0.96030 0.94896 0.90990 0.91654 0.92174 0.88386 0.88733 0.90437 0.90277 0.89790 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.32 60.06 0.56 0.88 16 2 N -0.55 -8.51 5.02 -251.26 -1.26 -9.77 16 3 C 0.03 0.33 9.57 60.07 0.57 0.91 16 4 C 0.06 1.16 4.94 -3.82 -0.02 1.14 16 5 C 0.00 0.04 5.71 -27.88 -0.16 -0.12 16 6 C -0.18 -4.27 6.61 -13.25 -0.09 -4.36 16 7 N -0.42 -10.69 9.81 -7.08 -0.07 -10.76 16 8 C -0.12 -3.01 6.52 -82.96 -0.54 -3.55 16 9 C -0.02 -0.49 5.76 -91.77 -0.53 -1.02 16 10 C -0.18 -3.49 10.09 -26.73 -0.27 -3.76 16 11 C -0.19 -3.63 10.23 -26.73 -0.27 -3.90 16 12 C 0.01 0.19 6.24 -38.78 -0.24 -0.06 16 13 C -0.37 -9.06 8.96 -38.22 -0.34 -9.40 16 14 H 0.10 2.30 7.10 -52.49 -0.37 1.92 16 15 C 0.05 1.13 5.49 -17.27 -0.09 1.03 16 16 N -0.77 -18.24 10.80 55.56 0.60 -17.63 16 17 Si 0.93 17.10 29.57 -169.99 -5.03 12.07 16 18 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 21 S 0.12 3.05 20.27 -107.50 -2.18 0.87 16 22 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 24 H 0.07 1.02 6.47 -51.93 -0.34 0.68 16 25 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 26 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.18 6.55 -51.93 -0.34 0.84 16 32 H 0.10 2.06 7.46 -51.93 -0.39 1.67 16 33 H 0.09 1.96 7.76 -51.93 -0.40 1.56 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.30 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -27.13 319.25 -10.16 -37.29 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.61 Total: 5.33 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.42 Total: -22.21 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.73 Total: -38.16 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.18 Total: 0.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.13 -10.16 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082437295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.774 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds