Wall clock time and date at job start Mon Mar 30 2020 07:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 111.00060 * 2 1 4 4 C 1.46899 * 110.99926 * 123.94995 * 2 1 3 5 5 C 1.53005 * 109.46856 * 66.04820 * 4 2 1 6 6 C 1.50697 * 109.47018 * 179.97438 * 5 4 2 7 7 N 1.29526 * 124.56284 * 89.99589 * 6 5 4 8 8 C 1.30678 * 117.63195 * 180.02562 * 7 6 5 9 9 C 1.50694 * 123.22310 * 179.97438 * 8 7 6 10 10 C 1.53005 * 117.50131 * 8.64951 * 9 8 7 11 11 C 1.53005 * 60.00038 * 252.50897 * 10 9 8 12 12 C 1.38590 * 113.55163 * 0.02562 * 8 7 6 13 13 C 1.40032 * 126.25188 * 179.73766 * 12 8 7 14 14 H 1.07998 * 120.00503 * 353.29804 * 13 12 8 15 15 C 1.40081 * 119.99999 * 173.30587 * 13 12 8 16 16 N 1.30865 * 119.99725 * 6.30559 * 15 13 12 17 17 Si 1.86799 * 120.00084 * 186.30817 * 15 13 12 18 18 H 1.48498 * 109.47011 * 94.98163 * 17 15 13 19 19 H 1.48495 * 109.47037 * 214.98530 * 17 15 13 20 20 H 1.48501 * 109.46818 * 334.98103 * 17 15 13 21 21 S 1.70882 * 124.56079 * 270.05192 * 6 5 4 22 22 H 1.09004 * 109.47175 * 296.04623 * 1 2 3 23 23 H 1.09004 * 109.47384 * 56.04677 * 1 2 3 24 24 H 1.08994 * 109.47310 * 176.04897 * 1 2 3 25 25 H 1.08994 * 109.47345 * 183.95565 * 3 2 1 26 26 H 1.09002 * 109.46947 * 303.95206 * 3 2 1 27 27 H 1.08995 * 109.46897 * 63.94842 * 3 2 1 28 28 H 1.08997 * 109.47430 * 306.04956 * 4 2 1 29 29 H 1.08999 * 109.46908 * 186.04288 * 4 2 1 30 30 H 1.08997 * 109.46990 * 59.99866 * 5 4 2 31 31 H 1.08990 * 109.47151 * 299.99602 * 5 4 2 32 32 H 1.08997 * 115.55059 * 154.34947 * 9 8 7 33 33 H 1.09003 * 117.49440 * 359.97438 * 10 9 8 34 34 H 1.08997 * 117.50058 * 145.01762 * 10 9 8 35 35 H 1.08996 * 117.49472 * 252.51070 * 11 10 9 36 36 H 1.08998 * 117.51960 * 107.47127 * 11 10 9 37 37 H 0.96993 * 120.00006 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1720 -3.0284 2.1371 7 7 1.5258 -3.2475 3.2380 8 6 2.1258 -3.9478 4.1639 9 6 1.4922 -4.2768 5.4910 10 6 0.0118 -3.9348 5.6713 11 6 1.0809 -3.1067 6.3870 12 6 3.4011 -4.3579 3.8088 13 6 4.2777 -5.1131 4.5976 14 1 4.0236 -5.3390 5.6227 15 6 5.4845 -5.5755 4.0571 16 7 5.8508 -5.2002 2.8581 17 14 6.5708 -6.7278 5.0478 18 1 6.2735 -8.1334 4.6722 19 1 7.9975 -6.4304 4.7627 20 1 6.3050 -6.5356 6.4961 21 16 3.7206 -3.7492 2.1862 22 1 -0.3634 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0827 1.3433 -0.0709 26 1 1.5898 1.9164 -0.8525 27 1 1.7043 1.8724 0.9232 28 1 1.5611 -0.3872 2.0628 29 1 3.0797 -0.6610 1.1756 30 1 2.0658 -2.6213 0.0452 31 1 0.5473 -2.3475 0.9324 32 1 1.8638 -5.1779 5.9788 33 1 -0.5037 -3.4714 4.8300 34 1 -0.5908 -4.6110 6.2777 35 1 1.1817 -3.2382 7.4643 36 1 1.2691 -2.0990 6.0167 37 1 6.6862 -5.5207 2.4837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082437295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:07 Heat of formation + Delta-G solvation = 23.096339 kcal Electronic energy + Delta-G solvation = -17779.279184 eV Core-core repulsion = 15068.215475 eV Total energy + Delta-G solvation = -2711.063709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96048 -38.56104 -36.90431 -36.08872 -33.03336 -30.92268 -28.49134 -27.43225 -25.61896 -24.32691 -23.07652 -22.54226 -21.45431 -20.53468 -18.70406 -17.51582 -17.23954 -16.41061 -16.26018 -16.06200 -15.70113 -15.01157 -14.84602 -14.44653 -14.23774 -13.81445 -13.60008 -13.31829 -13.07637 -12.83162 -12.78655 -12.69414 -12.51704 -12.31253 -12.26858 -12.02830 -11.76570 -11.51449 -11.40305 -11.17129 -10.86392 -9.73216 -9.63233 -9.36703 -8.91802 -8.82320 -6.43706 0.66776 1.37499 1.50337 1.54254 1.56295 1.99742 2.19034 2.30647 2.92242 3.03852 3.45569 3.94160 4.10696 4.21515 4.23142 4.26247 4.32786 4.47785 4.49467 4.60656 4.69461 4.74380 4.82124 4.89624 4.96201 4.97117 4.97872 5.03610 5.12653 5.21775 5.34193 5.41775 5.53708 5.85687 6.00607 6.08981 6.11818 6.47649 6.50023 7.89490 8.01515 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.006068 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.563620 B = 4613.579793 C = 5786.029108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.557 5.557 3 C 0.024 3.976 4 C 0.080 3.920 5 C 0.008 3.992 6 C -0.184 4.184 7 N -0.439 5.439 8 C -0.143 4.143 9 C -0.052 4.052 10 C -0.164 4.164 11 C -0.172 4.172 12 C -0.025 4.025 13 C -0.388 4.388 14 H 0.105 0.895 15 C 0.012 3.988 16 N -0.796 5.796 17 Si 1.009 2.991 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.251 1.251 21 S 0.101 5.899 22 H 0.019 0.981 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.022 0.978 28 H 0.014 0.986 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 3.941 -0.696 4.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.281 5.281 3 C -0.124 4.124 4 C -0.050 4.050 5 C -0.033 4.033 6 C -0.454 4.454 7 N -0.151 5.151 8 C -0.277 4.277 9 C -0.073 4.073 10 C -0.201 4.201 11 C -0.209 4.209 12 C -0.148 4.148 13 C -0.425 4.425 14 H 0.123 0.877 15 C -0.207 4.207 16 N -0.422 5.422 17 Si 0.828 3.172 18 H -0.184 1.184 19 H -0.186 1.186 20 H -0.174 1.174 21 S 0.354 5.646 22 H 0.038 0.962 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.564 3.989 -2.102 4.772 hybrid contribution -0.187 -0.179 1.728 1.747 sum -1.750 3.810 -0.374 4.209 Atomic orbital electron populations 1.22462 0.86694 1.02553 1.00817 1.62034 1.08935 1.14634 1.42496 1.22440 1.01013 0.87893 1.01026 1.21908 0.99199 0.93311 0.90536 1.19484 0.99411 0.92004 0.92391 1.26211 1.01465 1.17479 1.00294 1.64949 1.37001 1.12651 1.00524 1.19470 0.93748 1.15760 0.98751 1.19938 0.96490 0.98520 0.92357 1.22796 0.91370 1.03594 1.02345 1.22876 1.04463 0.95406 0.98172 1.23402 0.96548 0.98708 0.96190 1.19535 1.00134 1.23280 0.99507 0.87669 1.27231 0.99283 0.97909 0.96308 1.69075 1.22426 1.35151 1.15595 0.84723 0.76374 0.77171 0.78943 1.18442 1.18630 1.17399 1.83882 1.14626 1.50401 1.15722 0.96201 0.89282 0.91663 0.91336 0.89285 0.95985 0.96766 0.91953 0.91234 0.91898 0.87858 0.90627 0.87111 0.87010 0.91711 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.32 127.69 1.19 1.78 16 2 N -0.56 -16.68 5.02 -948.84 -4.76 -21.45 16 3 C 0.02 0.58 9.57 127.69 1.22 1.80 16 4 C 0.08 2.92 4.94 86.31 0.43 3.34 16 5 C 0.01 0.33 5.71 29.85 0.17 0.50 16 6 C -0.18 -9.07 6.61 88.45 0.59 -8.48 16 7 N -0.44 -22.87 9.81 -176.31 -1.73 -24.60 16 8 C -0.14 -7.47 6.52 42.81 0.28 -7.19 16 9 C -0.05 -2.30 5.76 -11.54 -0.07 -2.37 16 10 C -0.16 -6.15 10.09 30.60 0.31 -5.84 16 11 C -0.17 -6.47 10.23 30.60 0.31 -6.16 16 12 C -0.03 -1.36 6.24 22.79 0.14 -1.21 16 13 C -0.39 -19.41 8.96 23.15 0.21 -19.20 16 14 H 0.11 4.94 7.10 -2.91 -0.02 4.92 16 15 C 0.01 0.55 5.49 85.28 0.47 1.02 16 16 N -0.80 -37.79 10.80 21.86 0.24 -37.55 16 17 Si 1.01 33.99 29.57 68.60 2.03 36.02 16 18 H -0.26 -8.52 7.11 99.48 0.71 -7.82 16 19 H -0.26 -8.36 7.11 99.48 0.71 -7.65 16 20 H -0.25 -8.14 7.11 99.48 0.71 -7.44 16 21 S 0.10 5.17 20.27 -56.49 -1.14 4.03 16 22 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 23 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 24 H 0.06 1.78 6.47 -2.39 -0.02 1.76 16 25 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 26 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 27 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16 29 H 0.06 2.37 8.06 -2.39 -0.02 2.35 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.06 2.50 6.55 -2.39 -0.02 2.48 16 32 H 0.10 4.32 7.46 -2.39 -0.02 4.30 16 33 H 0.08 3.13 7.76 -2.39 -0.02 3.11 16 34 H 0.11 3.39 8.14 -2.39 -0.02 3.38 16 35 H 0.11 3.45 8.14 -2.39 -0.02 3.44 16 36 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.31 12.95 8.30 -92.71 -0.77 12.18 16 Total: -1.00 -59.46 319.25 0.92 -58.54 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.05 Total: 27.02 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 5.25 Total: -42.01 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -6.26 Total: -83.60 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.14 Total: 4.03 kcal Total: -59.46 0.92 -58.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082437295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.631 kcal (2) G-P(sol) polarization free energy of solvation -59.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds