Wall clock time and date at job start Mon Mar 30 2020 07:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.45681 * 2 1 4 4 C 1.53038 * 109.46373 * 240.02048 * 2 1 3 5 5 C 1.53117 * 109.27897 * 180.80468 * 4 2 1 6 6 C 1.53121 * 109.15807 * 57.65898 * 5 4 2 7 7 C 1.53040 * 109.28017 * 302.34486 * 6 5 4 8 8 N 1.46851 * 109.52327 * 59.17936 * 7 6 5 9 9 C 1.46893 * 110.99972 * 174.16672 * 8 7 6 10 10 C 1.50700 * 109.47567 * 66.04433 * 9 8 7 11 11 N 1.28797 * 124.99245 * 90.01621 * 10 9 8 12 12 C 1.33649 * 116.05939 * 179.97438 * 11 10 9 13 13 C 1.41152 * 122.86002 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99790 * 174.45233 * 13 12 11 15 15 C 1.39720 * 120.00455 * 354.45388 * 13 12 11 16 16 N 1.31023 * 119.99562 * 6.33226 * 15 13 12 17 17 Si 1.86795 * 120.00262 * 186.33408 * 15 13 12 18 18 H 1.48493 * 109.47184 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46891 * 119.99913 * 17 15 13 20 20 H 1.48500 * 109.47347 * 239.99743 * 17 15 13 21 21 C 1.37701 * 114.27693 * 0.02562 * 12 11 10 22 22 S 1.70992 * 108.83840 * 0.02562 * 21 12 11 23 23 H 1.09004 * 109.47105 * 300.02839 * 1 2 3 24 24 H 1.09001 * 109.47115 * 60.02614 * 1 2 3 25 25 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.49784 * 60.86266 * 4 2 1 27 27 H 1.09004 * 109.53503 * 300.77317 * 4 2 1 28 28 H 1.08999 * 109.52464 * 297.75475 * 5 4 2 29 29 H 1.09001 * 109.52007 * 177.55560 * 5 4 2 30 30 H 1.09000 * 109.50481 * 182.40462 * 6 5 4 31 31 H 1.09006 * 109.50516 * 62.28483 * 6 5 4 32 32 H 1.08999 * 109.46075 * 299.16664 * 7 6 5 33 33 H 1.08994 * 109.46293 * 179.20148 * 7 6 5 34 34 H 1.09004 * 109.47202 * 306.04793 * 9 8 7 35 35 H 1.09002 * 109.47202 * 186.04596 * 9 8 7 36 36 H 0.96996 * 119.99808 * 179.97438 * 16 15 13 37 37 H 1.07998 * 125.58311 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5710 -0.7362 -1.2355 6 6 4.0547 -1.4189 0.0469 7 6 3.4864 -0.6777 1.2592 8 7 2.0192 -0.6918 1.1995 9 6 1.4372 -0.1104 2.4165 10 6 1.7791 1.3556 2.4862 11 7 1.0651 2.3051 1.9888 12 6 1.5378 3.5441 2.1549 13 6 0.8716 4.6896 1.6688 14 1 1.2473 5.6740 1.9057 15 6 -0.2740 4.5500 0.8811 16 7 -0.8014 3.3649 0.6963 17 14 -1.0535 6.0528 0.0917 18 1 -0.2716 7.2627 0.4516 19 1 -1.0601 5.8892 -1.3844 20 1 -2.4483 6.2008 0.5794 21 6 2.7302 3.6079 2.8407 22 16 3.2127 2.0214 3.2580 23 1 -0.3633 0.5143 0.8898 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.6895 -0.1983 -2.1398 27 1 1.6658 -1.7448 -1.2582 28 1 3.9457 0.2869 -1.2671 29 1 3.9379 -1.2866 -2.1018 30 1 5.1438 -1.3948 0.0834 31 1 3.7124 -2.4537 0.0597 32 1 3.8402 0.3532 1.2533 33 1 3.8174 -1.1698 2.1737 34 1 1.8412 -0.6197 3.2915 35 1 0.3540 -0.2302 2.3943 36 1 -1.5969 3.2680 0.1498 37 1 3.2719 4.5119 3.0765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082687962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:37 Heat of formation + Delta-G solvation = 29.891582 kcal Electronic energy + Delta-G solvation = -19026.931996 eV Core-core repulsion = 16316.162951 eV Total energy + Delta-G solvation = -2710.769045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.18644 -37.46606 -33.84706 -32.89352 -31.90679 -29.40402 -27.04299 -26.01516 -25.49752 -23.07674 -21.69949 -20.72566 -19.38989 -18.24376 -17.62137 -15.57213 -15.19437 -15.09957 -14.99236 -14.16000 -14.01213 -13.65336 -13.36528 -12.86753 -12.50709 -12.12099 -11.85911 -11.70687 -11.60275 -11.35493 -11.25879 -11.20600 -11.01051 -10.73690 -10.50833 -10.37366 -10.32873 -10.02931 -9.72160 -9.67001 -9.27478 -8.29351 -7.96836 -7.68255 -7.34367 -6.56302 -4.36175 2.26095 2.92937 3.02076 3.08932 3.13562 3.66967 3.99459 4.20529 4.46106 5.10949 5.15796 5.21523 5.36035 5.47226 5.53793 5.80079 5.81682 5.90560 5.95227 6.08969 6.16471 6.23914 6.25363 6.33550 6.36542 6.41163 6.56024 6.64298 6.78363 6.90651 7.08225 7.13833 7.24254 7.49841 7.55236 7.60767 8.18785 8.53587 8.87804 9.57548 10.30911 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.007885 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.371077 B = 3550.286606 C = 4329.682493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.054 0.946 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.112 4.112 7 C 0.044 3.956 8 N -0.518 5.518 9 C 0.135 3.865 10 C 0.023 3.977 11 N -0.381 5.381 12 C 0.223 3.777 13 C -0.432 4.432 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.745 5.745 17 Si 0.908 3.092 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.455 4.455 22 S -0.049 6.049 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.272 0.728 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -8.326 -2.461 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.072 0.928 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.084 4.084 8 N -0.242 5.242 9 C 0.003 3.997 10 C -0.263 4.263 11 N -0.096 5.096 12 C 0.101 3.899 13 C -0.466 4.466 14 H 0.100 0.900 15 C -0.149 4.149 16 N -0.368 5.368 17 Si 0.732 3.268 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.594 4.594 22 S 0.198 5.802 23 H 0.105 0.895 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.325 -9.426 -2.376 10.274 hybrid contribution -0.390 2.622 -0.598 2.717 sum 2.935 -6.804 -2.974 7.985 Atomic orbital electron populations 1.21789 0.93648 1.00012 1.03959 1.21548 0.96177 0.96090 0.88498 0.92814 1.21636 0.94924 1.00851 0.97359 1.21585 0.96423 1.00574 0.97382 1.21540 0.99211 0.99800 0.94391 1.22206 0.88102 1.00004 0.98116 1.62465 1.06838 1.52868 1.02022 1.20838 1.01459 0.84666 0.92692 1.28796 0.94513 1.00550 1.02403 1.67405 1.27498 0.99110 1.15585 1.18059 0.89481 0.89967 0.92361 1.18954 1.07951 0.92310 1.27415 0.90040 1.25934 0.96440 0.96950 0.95541 1.70098 1.16188 1.22787 1.27699 0.86268 0.79217 0.82095 0.79190 1.18643 1.19952 1.19963 1.25073 1.07856 0.97634 1.28816 1.82673 1.31409 1.03734 1.62346 0.89504 0.93143 0.94006 0.92142 0.91700 0.92397 0.92443 0.92090 0.91554 0.93541 0.91201 0.90109 0.88222 0.91727 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.71 37.16 0.32 -2.17 16 2 C 0.08 1.54 1.88 -67.72 -0.13 1.41 16 3 H 0.05 1.21 6.84 -51.93 -0.36 0.86 16 4 C -0.11 -1.67 5.37 -26.65 -0.14 -1.81 16 5 C -0.12 -1.70 6.00 -26.61 -0.16 -1.86 16 6 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 7 C 0.04 0.70 4.99 -3.83 -0.02 0.68 16 8 N -0.52 -8.79 4.69 -228.12 -1.07 -9.86 16 9 C 0.14 2.46 5.43 -4.98 -0.03 2.43 16 10 C 0.02 0.51 5.05 -13.55 -0.07 0.44 16 11 N -0.38 -9.75 6.91 -8.35 -0.06 -9.81 16 12 C 0.22 6.13 6.46 -86.17 -0.56 5.57 16 13 C -0.43 -11.79 9.23 -37.92 -0.35 -12.14 16 14 H 0.08 2.16 7.85 -52.48 -0.41 1.75 16 15 C 0.07 1.88 5.48 -17.34 -0.10 1.78 16 16 N -0.74 -19.05 11.72 55.54 0.65 -18.40 16 17 Si 0.91 18.98 29.56 -169.99 -5.03 13.96 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 21 C -0.45 -11.69 10.98 30.54 0.34 -11.36 16 22 S -0.05 -1.07 21.88 -107.50 -2.35 -3.42 16 23 H 0.09 1.81 5.52 -51.93 -0.29 1.52 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.86 6.48 -51.93 -0.34 0.52 16 33 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 34 H 0.08 1.29 8.06 -51.93 -0.42 0.88 16 35 H 0.10 1.83 6.32 -51.93 -0.33 1.50 16 36 H 0.27 6.38 8.30 -40.82 -0.34 6.04 16 37 H 0.13 3.35 8.06 -52.49 -0.42 2.92 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -27.61 302.41 -9.84 -37.45 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.50 Total: 4.21 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.05 Total: -18.69 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.48 Total: -38.07 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.35 Total: -3.42 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.61 -9.84 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082687962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.343 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds