Wall clock time and date at job start Mon Mar 30 2020 07:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.45983 * 2 1 4 4 C 1.53027 * 109.45755 * 119.97655 * 2 1 3 5 5 C 1.53114 * 109.27971 * 179.18641 * 4 2 1 6 6 C 1.53120 * 109.16240 * 302.34795 * 5 4 2 7 7 C 1.53028 * 109.27967 * 57.65197 * 6 5 4 8 8 N 1.46846 * 109.52305 * 300.82345 * 7 6 5 9 9 C 1.46903 * 110.99965 * 185.83739 * 8 7 6 10 10 C 1.50703 * 109.47274 * 45.78820 * 9 8 7 11 11 N 1.28798 * 124.99173 * 90.30013 * 10 9 8 12 12 C 1.33642 * 116.06031 * 180.17126 * 11 10 9 13 13 C 1.41160 * 122.86462 * 179.79727 * 12 11 10 14 14 H 1.07994 * 120.00127 * 172.24153 * 13 12 11 15 15 C 1.39723 * 119.99522 * 352.52097 * 13 12 11 16 16 N 1.31020 * 119.99610 * 170.67711 * 15 13 12 17 17 Si 1.86798 * 120.00434 * 350.67857 * 15 13 12 18 18 H 1.48492 * 109.47258 * 84.60808 * 17 15 13 19 19 H 1.48496 * 109.47255 * 204.61288 * 17 15 13 20 20 H 1.48502 * 109.46543 * 324.61101 * 17 15 13 21 21 C 1.37697 * 114.27644 * 359.52678 * 12 11 10 22 22 S 1.70998 * 108.83761 * 0.24624 * 21 12 11 23 23 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46376 * 299.97594 * 1 2 3 25 25 H 1.09001 * 109.47012 * 59.97001 * 1 2 3 26 26 H 1.08994 * 109.50727 * 299.13272 * 4 2 1 27 27 H 1.09008 * 109.50194 * 59.20665 * 4 2 1 28 28 H 1.09005 * 109.52329 * 62.25236 * 5 4 2 29 29 H 1.09006 * 109.52569 * 182.44471 * 5 4 2 30 30 H 1.09004 * 109.50413 * 177.59292 * 6 5 4 31 31 H 1.09001 * 109.50251 * 297.67143 * 6 5 4 32 32 H 1.08999 * 109.46816 * 180.80092 * 7 6 5 33 33 H 1.09007 * 109.46176 * 60.83562 * 7 6 5 34 34 H 1.09006 * 109.47220 * 285.78775 * 9 8 7 35 35 H 1.08998 * 109.47627 * 165.78848 * 9 8 7 36 36 H 0.96998 * 119.99887 * 180.02562 * 16 15 13 37 37 H 1.07997 * 125.58281 * 180.27576 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5708 -0.7364 1.2355 6 6 4.0546 -1.4191 -0.0468 7 6 3.4864 -0.6780 -1.2591 8 7 2.0193 -0.6918 -1.1994 9 6 1.4374 -0.1104 -2.4166 10 6 2.1390 -0.6718 -3.6264 11 7 1.7787 -1.7314 -4.2638 12 6 2.5340 -2.0709 -5.3128 13 6 2.2724 -3.2064 -6.1095 14 1 2.8334 -3.3696 -7.0178 15 6 1.2837 -4.1161 -5.7260 16 7 0.9131 -5.0662 -6.5485 17 14 0.4901 -3.9778 -4.0406 18 1 -0.6231 -2.9967 -4.0967 19 1 -0.0388 -5.3039 -3.6321 20 1 1.5016 -3.5228 -3.0532 21 6 3.5856 -1.2153 -5.5538 22 16 3.5655 0.0284 -4.3804 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5135 0.8903 25 1 -0.3633 0.5143 -0.8897 26 1 1.6894 -0.1983 2.1398 27 1 1.6650 -1.7445 1.2578 28 1 3.9457 0.2867 1.2672 29 1 3.9377 -1.2868 2.1019 30 1 5.1437 -1.3952 -0.0832 31 1 3.7127 -2.4541 -0.0592 32 1 3.8174 -1.1701 -2.1736 33 1 3.8405 0.3530 -1.2531 34 1 1.5590 0.9726 -2.3960 35 1 0.3765 -0.3560 -2.4654 36 1 0.2264 -5.6975 -6.2825 37 1 4.3050 -1.3134 -6.3533 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082687963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:39 Heat of formation + Delta-G solvation = 23.439950 kcal Electronic energy + Delta-G solvation = -18661.059242 eV Core-core repulsion = 15950.010434 eV Total energy + Delta-G solvation = -2711.048809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.41481 -38.09622 -34.03119 -33.13089 -32.42472 -29.87183 -27.33936 -26.43606 -26.03964 -23.62034 -21.49062 -20.92469 -19.69183 -18.71352 -18.02505 -15.98608 -15.71673 -15.21054 -15.05923 -14.40896 -14.19509 -14.02327 -13.49258 -13.03262 -12.83633 -12.64560 -12.40868 -12.12619 -11.95085 -11.82026 -11.73347 -11.36182 -10.96626 -10.90194 -10.67269 -10.57988 -10.32106 -10.26297 -10.16150 -9.91557 -9.25658 -8.36592 -8.14601 -7.99653 -7.56947 -6.81091 -4.46328 1.89050 2.49166 3.36775 3.38206 3.48389 3.69448 3.91260 4.19141 4.39447 4.76061 4.78202 4.89211 5.00830 5.20365 5.31878 5.38034 5.40094 5.47464 5.56511 5.66645 5.73139 5.87131 5.90215 5.95959 6.01082 6.03736 6.18006 6.23890 6.34446 6.46607 6.49176 6.94105 7.01737 7.21159 7.30627 7.43654 8.20171 8.47272 8.58107 9.15092 10.17097 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.007526 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.834681 B = 3719.373700 C = 4326.429046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.116 4.116 7 C 0.047 3.953 8 N -0.524 5.524 9 C 0.137 3.863 10 C 0.072 3.928 11 N -0.458 5.458 12 C 0.203 3.797 13 C -0.411 4.411 14 H 0.094 0.906 15 C 0.079 3.921 16 N -0.815 5.815 17 Si 0.973 3.027 18 H -0.277 1.277 19 H -0.323 1.323 20 H -0.246 1.246 21 C -0.444 4.444 22 S 0.003 5.997 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.285 0.715 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 9.334 14.698 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 H 0.057 0.943 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.081 4.081 8 N -0.251 5.251 9 C 0.006 3.994 10 C -0.210 4.210 11 N -0.177 5.177 12 C 0.083 3.917 13 C -0.445 4.445 14 H 0.112 0.888 15 C -0.140 4.140 16 N -0.440 5.440 17 Si 0.805 3.195 18 H -0.204 1.204 19 H -0.254 1.254 20 H -0.171 1.171 21 C -0.583 4.583 22 S 0.251 5.749 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.077 9.168 14.888 17.517 hybrid contribution -0.184 -0.038 -0.322 0.373 sum 0.892 9.130 14.565 17.213 Atomic orbital electron populations 1.21935 0.94413 1.02903 1.01577 1.21638 0.95364 0.95187 0.90394 0.94303 1.21616 0.95541 1.01543 0.96089 1.21586 0.95807 1.00435 0.97937 1.21576 0.99621 1.00469 0.93715 1.22329 0.86848 0.98920 0.99987 1.61995 1.07666 1.54686 1.00721 1.20600 0.98922 0.95374 0.84474 1.27108 0.97461 0.95854 1.00585 1.66150 1.30123 1.13026 1.08449 1.18091 0.88687 0.95573 0.89356 1.18819 1.16250 1.02087 1.07328 0.88778 1.26269 0.94476 0.92911 1.00379 1.69732 1.24697 1.13120 1.36449 0.85100 0.79821 0.73458 0.81133 1.20377 1.25415 1.17050 1.24934 1.12889 1.06844 1.13653 1.82696 1.31592 1.33362 1.27266 0.91513 0.92330 0.92364 0.91794 0.90972 0.92479 0.92043 0.91658 0.91086 0.89324 0.94955 0.93231 0.88381 0.90507 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.78 37.16 0.33 -1.37 16 2 C 0.08 1.02 2.40 -67.72 -0.16 0.86 16 3 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -1.21 5.37 -26.66 -0.14 -1.35 16 5 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 6 C -0.12 -1.53 6.09 -26.65 -0.16 -1.69 16 7 C 0.05 0.74 4.69 -3.84 -0.02 0.72 16 8 N -0.52 -8.35 4.64 -228.12 -1.06 -9.41 16 9 C 0.14 2.33 4.98 -4.97 -0.02 2.31 16 10 C 0.07 1.52 5.50 -13.55 -0.07 1.44 16 11 N -0.46 -11.52 5.31 -8.36 -0.04 -11.57 16 12 C 0.20 5.45 6.22 -86.17 -0.54 4.92 16 13 C -0.41 -11.83 9.79 -37.92 -0.37 -12.20 16 14 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 15 C 0.08 2.23 5.51 -17.34 -0.10 2.14 16 16 N -0.82 -22.98 13.94 55.54 0.77 -22.20 16 17 Si 0.97 24.49 25.66 -169.99 -4.36 20.13 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.32 -7.91 7.11 56.52 0.40 -7.51 16 20 H -0.25 -6.35 6.38 56.52 0.36 -5.98 16 21 C -0.44 -10.86 10.98 30.53 0.34 -10.52 16 22 S 0.00 0.06 21.55 -107.50 -2.32 -2.26 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.65 6.55 -51.93 -0.34 0.31 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.66 5.53 -51.93 -0.29 1.37 16 33 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.10 1.67 6.84 -51.93 -0.36 1.31 16 36 H 0.29 7.35 8.30 -40.82 -0.34 7.01 16 37 H 0.14 3.41 8.06 -52.49 -0.42 2.99 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -29.72 300.85 -9.21 -38.93 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.65 Total: -1.95 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.09 Total: -16.21 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.33 Total: -43.18 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.36 Total: 20.13 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.32 Total: -2.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.72 -9.21 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082687963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.372 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds