Wall clock time and date at job start Mon Mar 30 2020 07:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.45983 * 2 1 4 4 C 1.53027 * 109.45755 * 119.97655 * 2 1 3 5 5 C 1.53114 * 109.27971 * 179.18641 * 4 2 1 6 6 C 1.53120 * 109.16240 * 302.34795 * 5 4 2 7 7 C 1.53028 * 109.27967 * 57.65197 * 6 5 4 8 8 N 1.46846 * 109.52305 * 300.82345 * 7 6 5 9 9 C 1.46903 * 110.99965 * 185.83739 * 8 7 6 10 10 C 1.50703 * 109.47274 * 45.78820 * 9 8 7 11 11 N 1.28798 * 124.99173 * 90.30013 * 10 9 8 12 12 C 1.33642 * 116.06031 * 180.17126 * 11 10 9 13 13 C 1.41160 * 122.86462 * 179.79727 * 12 11 10 14 14 H 1.07994 * 120.00127 * 172.24153 * 13 12 11 15 15 C 1.39723 * 119.99522 * 352.52097 * 13 12 11 16 16 N 1.31020 * 119.99610 * 170.67711 * 15 13 12 17 17 Si 1.86798 * 120.00434 * 350.67857 * 15 13 12 18 18 H 1.48492 * 109.47258 * 84.60808 * 17 15 13 19 19 H 1.48496 * 109.47255 * 204.61288 * 17 15 13 20 20 H 1.48502 * 109.46543 * 324.61101 * 17 15 13 21 21 C 1.37697 * 114.27644 * 359.52678 * 12 11 10 22 22 S 1.70998 * 108.83761 * 0.24624 * 21 12 11 23 23 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46376 * 299.97594 * 1 2 3 25 25 H 1.09001 * 109.47012 * 59.97001 * 1 2 3 26 26 H 1.08994 * 109.50727 * 299.13272 * 4 2 1 27 27 H 1.09008 * 109.50194 * 59.20665 * 4 2 1 28 28 H 1.09005 * 109.52329 * 62.25236 * 5 4 2 29 29 H 1.09006 * 109.52569 * 182.44471 * 5 4 2 30 30 H 1.09004 * 109.50413 * 177.59292 * 6 5 4 31 31 H 1.09001 * 109.50251 * 297.67143 * 6 5 4 32 32 H 1.08999 * 109.46816 * 180.80092 * 7 6 5 33 33 H 1.09007 * 109.46176 * 60.83562 * 7 6 5 34 34 H 1.09006 * 109.47220 * 285.78775 * 9 8 7 35 35 H 1.08998 * 109.47627 * 165.78848 * 9 8 7 36 36 H 0.96998 * 119.99887 * 180.02562 * 16 15 13 37 37 H 1.07997 * 125.58281 * 180.27576 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5708 -0.7364 1.2355 6 6 4.0546 -1.4191 -0.0468 7 6 3.4864 -0.6780 -1.2591 8 7 2.0193 -0.6918 -1.1994 9 6 1.4374 -0.1104 -2.4166 10 6 2.1390 -0.6718 -3.6264 11 7 1.7787 -1.7314 -4.2638 12 6 2.5340 -2.0709 -5.3128 13 6 2.2724 -3.2064 -6.1095 14 1 2.8334 -3.3696 -7.0178 15 6 1.2837 -4.1161 -5.7260 16 7 0.9131 -5.0662 -6.5485 17 14 0.4901 -3.9778 -4.0406 18 1 -0.6231 -2.9967 -4.0967 19 1 -0.0388 -5.3039 -3.6321 20 1 1.5016 -3.5228 -3.0532 21 6 3.5856 -1.2153 -5.5538 22 16 3.5655 0.0284 -4.3804 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5135 0.8903 25 1 -0.3633 0.5143 -0.8897 26 1 1.6894 -0.1983 2.1398 27 1 1.6650 -1.7445 1.2578 28 1 3.9457 0.2867 1.2672 29 1 3.9377 -1.2868 2.1019 30 1 5.1437 -1.3952 -0.0832 31 1 3.7127 -2.4541 -0.0592 32 1 3.8174 -1.1701 -2.1736 33 1 3.8405 0.3530 -1.2531 34 1 1.5590 0.9726 -2.3960 35 1 0.3765 -0.3560 -2.4654 36 1 0.2264 -5.6975 -6.2825 37 1 4.3050 -1.3134 -6.3533 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082687963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:39 Heat of formation + Delta-G solvation = 4.463652 kcal Electronic energy + Delta-G solvation = -18661.882116 eV Core-core repulsion = 15950.010434 eV Total energy + Delta-G solvation = -2711.871683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71699 -39.74823 -35.57024 -34.76011 -33.48043 -31.60229 -28.60548 -28.08855 -27.55911 -24.87384 -22.77945 -22.25681 -20.94113 -20.39447 -19.89118 -17.44219 -17.20514 -17.10533 -16.41616 -15.63112 -15.30633 -15.25265 -14.97005 -14.75220 -14.41938 -14.11776 -13.78412 -13.63059 -13.22879 -12.94829 -12.87328 -12.77912 -12.67011 -12.52468 -12.34955 -11.89876 -11.81114 -11.57110 -11.35535 -11.30246 -11.10669 -10.17510 -9.87602 -9.53675 -9.19145 -8.90704 -6.57445 0.08753 0.75697 1.35640 1.41923 1.49757 1.66622 2.01188 2.38642 2.92457 3.20503 3.30893 3.84329 3.95142 4.01618 4.14809 4.26161 4.42252 4.47390 4.53278 4.62043 4.72009 4.77095 4.88139 4.94266 4.97492 4.99192 5.03777 5.07371 5.11931 5.25957 5.31070 5.36791 5.39709 5.53876 5.98184 6.04341 6.23462 6.41479 6.54577 7.20617 8.13343 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.007526 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.834681 B = 3719.373700 C = 4326.429046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 H 0.055 0.945 4 C -0.109 4.109 5 C -0.114 4.114 6 C -0.115 4.115 7 C 0.048 3.952 8 N -0.544 5.544 9 C 0.137 3.863 10 C 0.076 3.924 11 N -0.497 5.497 12 C 0.188 3.812 13 C -0.451 4.451 14 H 0.064 0.936 15 C 0.047 3.953 16 N -0.851 5.851 17 Si 1.032 2.968 18 H -0.279 1.279 19 H -0.315 1.315 20 H -0.259 1.259 21 C -0.457 4.457 22 S 0.093 5.907 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.293 0.707 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 12.045 17.816 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.081 4.081 8 N -0.271 5.271 9 C 0.006 3.994 10 C -0.204 4.204 11 N -0.217 5.217 12 C 0.066 3.934 13 C -0.486 4.486 14 H 0.082 0.918 15 C -0.168 4.168 16 N -0.478 5.478 17 Si 0.863 3.137 18 H -0.205 1.205 19 H -0.246 1.246 20 H -0.184 1.184 21 C -0.596 4.596 22 S 0.343 5.657 23 H 0.069 0.931 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.194 11.907 18.012 21.625 hybrid contribution -0.043 -0.659 -1.245 1.410 sum 1.150 11.248 16.767 20.223 Atomic orbital electron populations 1.21943 0.93667 1.02268 1.02824 1.21804 0.95991 0.95725 0.89170 0.92741 1.21639 0.95633 1.00900 0.96454 1.21564 0.95655 1.01086 0.96859 1.21575 1.00245 0.99236 0.94283 1.22267 0.86939 0.99515 0.99330 1.61998 1.07847 1.55976 1.01316 1.20761 0.98479 0.96794 0.83369 1.27970 0.97350 0.94413 1.00700 1.66081 1.31204 1.15298 1.09111 1.18143 0.89614 0.95473 0.90155 1.18801 1.17787 1.04369 1.07624 0.91809 1.26846 0.94697 0.92586 1.02709 1.69748 1.26094 1.14270 1.37707 0.84197 0.78452 0.73351 0.77707 1.20505 1.24639 1.18446 1.25370 1.11772 1.08115 1.14349 1.82252 1.29829 1.29791 1.23824 0.93095 0.89730 0.92516 0.89074 0.92513 0.91061 0.90561 0.90561 0.93246 0.93056 0.93454 0.90149 0.88401 0.89681 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.78 71.98 0.63 -2.23 16 2 C 0.08 1.69 2.40 44.94 0.11 1.80 16 3 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.98 5.37 30.64 0.16 -1.82 16 5 C -0.11 -2.03 6.00 30.67 0.18 -1.85 16 6 C -0.12 -2.79 6.09 30.64 0.19 -2.60 16 7 C 0.05 1.37 4.69 86.32 0.41 1.77 16 8 N -0.54 -15.91 4.64 -875.64 -4.06 -19.97 16 9 C 0.14 4.27 4.98 85.56 0.43 4.70 16 10 C 0.08 3.11 5.50 88.55 0.49 3.60 16 11 N -0.50 -24.91 5.31 -180.35 -0.96 -25.86 16 12 C 0.19 10.27 6.22 39.46 0.25 10.52 16 13 C -0.45 -27.25 9.79 23.35 0.23 -27.02 16 14 H 0.06 4.07 8.06 -2.91 -0.02 4.04 16 15 C 0.05 2.76 5.51 85.17 0.47 3.23 16 16 N -0.85 -49.89 13.94 21.80 0.30 -49.59 16 17 Si 1.03 52.09 25.66 68.60 1.76 53.85 16 18 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.32 -15.16 7.11 99.48 0.71 -14.45 16 20 H -0.26 -13.43 6.38 99.48 0.63 -12.80 16 21 C -0.46 -22.31 10.98 67.69 0.74 -21.57 16 22 S 0.09 3.55 21.55 -56.49 -1.22 2.33 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.09 6.55 -2.39 -0.02 1.08 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.83 5.53 -2.39 -0.01 1.82 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.08 2.01 8.08 -2.38 -0.02 1.99 16 35 H 0.10 3.10 6.84 -2.39 -0.02 3.08 16 36 H 0.29 15.59 8.30 -92.71 -0.77 14.82 16 37 H 0.14 6.86 8.06 -2.91 -0.02 6.84 16 Total: -1.00 -66.52 300.85 1.08 -65.44 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 0.97 Total: 5.28 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 4.28 Total: -31.47 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -4.71 Total: -95.43 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 1.76 Total: 53.85 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.22 Total: 2.33 kcal Total: -66.52 1.08 -65.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082687963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.901 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds