Wall clock time and date at job start Mon Mar 30 2020 07:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49931 * 2 1 4 4 C 1.53118 * 109.50449 * 120.11520 * 2 1 3 5 5 C 1.53118 * 109.15928 * 177.59711 * 4 2 1 6 6 C 1.53041 * 109.27771 * 302.34696 * 5 4 2 7 7 N 1.46842 * 109.52325 * 59.18261 * 6 5 4 8 8 C 1.46903 * 111.00353 * 174.15879 * 7 6 5 9 9 C 1.50702 * 109.46931 * 314.21079 * 8 7 6 10 10 N 1.28795 * 124.99066 * 89.99401 * 9 8 7 11 11 C 1.33650 * 116.05737 * 179.97438 * 10 9 8 12 12 C 1.41159 * 122.86008 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99647 * 174.03567 * 12 11 10 14 14 C 1.39714 * 120.00039 * 354.03437 * 12 11 10 15 15 N 1.31019 * 120.00050 * 6.17525 * 14 12 11 16 16 Si 1.86801 * 119.99675 * 186.17033 * 14 12 11 17 17 H 1.48495 * 109.47396 * 90.00481 * 16 14 12 18 18 H 1.48502 * 109.46866 * 210.00199 * 16 14 12 19 19 H 1.48501 * 109.47257 * 329.99694 * 16 14 12 20 20 C 1.37698 * 114.27516 * 0.02562 * 11 10 9 21 21 S 1.70993 * 108.84008 * 359.76335 * 20 11 10 22 22 C 1.46847 * 111.19932 * 298.25901 * 7 6 5 23 23 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47061 * 300.07432 * 1 2 3 25 25 H 1.09002 * 109.47037 * 60.07733 * 1 2 3 26 26 H 1.08999 * 109.52530 * 297.50539 * 4 2 1 27 27 H 1.08999 * 109.52164 * 57.69472 * 4 2 1 28 28 H 1.09002 * 109.50565 * 182.41123 * 5 4 2 29 29 H 1.08996 * 109.53876 * 62.31255 * 5 4 2 30 30 H 1.08996 * 109.46567 * 299.16402 * 6 5 4 31 31 H 1.09002 * 109.45964 * 179.19851 * 6 5 4 32 32 H 1.09001 * 109.46923 * 74.20474 * 8 7 6 33 33 H 1.08993 * 109.47165 * 194.21014 * 8 7 6 34 34 H 0.97005 * 119.99660 * 179.97438 * 15 14 12 35 35 H 1.08003 * 125.58062 * 180.02562 * 20 11 10 36 36 H 1.09003 * 109.45712 * 301.72463 * 22 7 6 37 37 H 1.09001 * 109.46885 * 181.76300 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7242 1.2485 5 6 3.5712 -0.7722 1.2105 6 6 4.0229 -1.4728 -0.0730 7 7 3.5093 -0.7416 -1.2381 8 6 4.0372 -1.3048 -2.4880 9 6 5.5198 -1.5360 -2.3479 10 7 6.0605 -2.6233 -1.9187 11 6 7.3959 -2.6344 -1.8674 12 6 8.1360 -3.7505 -1.4209 13 1 9.2139 -3.7458 -1.4886 14 6 7.4741 -4.8612 -0.8915 15 7 6.1655 -4.9189 -0.9199 16 14 8.4550 -6.2638 -0.1431 17 1 8.6600 -6.0071 1.3050 18 1 7.7115 -7.5371 -0.3197 19 1 9.7731 -6.3624 -0.8199 20 6 7.9884 -1.4644 -2.2872 21 16 6.7662 -0.3627 -2.7525 22 6 2.0410 -0.7228 -1.2483 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5150 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 1.7156 -0.1877 2.1397 27 1 1.6453 -1.7395 1.2684 28 1 3.9396 -1.3241 2.0752 29 1 3.9684 0.2426 1.2302 30 1 3.6376 -2.4923 -0.0852 31 1 5.1121 -1.4960 -0.1100 32 1 3.5402 -2.2518 -2.6982 33 1 3.8538 -0.6086 -3.3063 34 1 5.7060 -5.6903 -0.5527 35 1 9.0511 -1.2753 -2.3214 36 1 1.6648 -1.7459 -1.2550 37 1 1.6904 -0.2014 -2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082688013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:48 Heat of formation + Delta-G solvation = 27.491452 kcal Electronic energy + Delta-G solvation = -18401.932582 eV Core-core repulsion = 15691.059460 eV Total energy + Delta-G solvation = -2710.873122 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.04226 -37.61426 -34.35618 -33.01092 -31.66431 -29.64395 -26.85339 -26.25482 -25.52052 -22.98881 -21.99519 -20.67129 -19.39344 -18.53057 -17.56191 -15.66511 -15.30365 -15.12129 -14.76153 -14.24710 -14.09462 -13.87367 -13.37528 -12.96721 -12.67346 -12.36101 -12.25930 -12.02370 -11.59316 -11.56223 -11.39619 -11.18704 -11.06363 -10.73308 -10.70455 -10.43033 -10.35847 -10.02605 -9.99191 -9.64407 -9.25726 -8.04001 -8.00345 -7.78717 -7.30204 -6.53313 -4.33826 2.27268 2.97189 3.04975 3.10252 3.13680 3.71461 4.01571 4.14719 4.48999 4.87129 5.00501 5.07804 5.29220 5.42772 5.49457 5.63659 5.66962 5.67947 5.79876 5.82298 5.88797 5.96527 6.08203 6.13490 6.20713 6.24385 6.29981 6.44970 6.69228 6.74310 6.84111 7.11656 7.25860 7.46465 7.50004 7.57414 8.20914 8.56457 8.90328 9.60607 10.34367 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.006321 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.215795 B = 4428.680293 C = 5356.835709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.116 4.116 6 C 0.060 3.940 7 N -0.531 5.531 8 C 0.143 3.857 9 C 0.056 3.944 10 N -0.394 5.394 11 C 0.225 3.775 12 C -0.434 4.434 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.752 5.752 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.453 4.453 21 S -0.022 6.022 22 C 0.062 3.938 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.272 0.728 35 H 0.136 0.864 36 H 0.032 0.968 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 5.702 2.174 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.068 4.068 7 N -0.256 5.256 8 C 0.012 3.988 9 C -0.228 4.228 10 N -0.109 5.109 11 C 0.102 3.898 12 C -0.469 4.469 13 H 0.101 0.899 14 C -0.148 4.148 15 N -0.376 5.376 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.593 4.593 21 S 0.226 5.774 22 C -0.066 4.066 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.050 0.950 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.014 6.548 2.034 12.137 hybrid contribution 0.876 -2.291 0.589 2.522 sum -9.139 4.257 2.623 10.417 Atomic orbital electron populations 1.21794 0.95386 1.01610 1.01466 1.21141 0.94566 1.00334 0.94627 0.90459 1.21638 0.96233 1.00121 0.97161 1.21594 0.95008 1.01344 0.97452 1.22084 1.01691 0.94563 0.88466 1.62056 1.06914 1.54321 1.02330 1.20431 0.87714 0.98481 0.92128 1.27454 0.98287 0.92461 1.04576 1.67447 1.11112 1.20012 1.12346 1.17998 0.85663 0.92785 0.93342 1.18930 0.94099 0.97668 1.36161 0.89938 1.25945 0.95024 0.99130 0.94698 1.70112 1.07989 1.27564 1.31904 0.86307 0.80517 0.79872 0.79957 1.19510 1.20323 1.18693 1.25173 1.01007 0.99673 1.33425 1.82664 1.01544 1.24063 1.69161 1.22099 0.87783 0.98768 0.97995 0.92898 0.92731 0.92736 0.92376 0.92449 0.91951 0.91547 0.94352 0.89463 0.92750 0.89922 0.91758 0.84619 0.95025 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.20 37.16 0.34 -1.07 16 2 C -0.09 -1.07 2.88 -90.54 -0.26 -1.33 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.47 5.29 -26.61 -0.14 -1.61 16 5 C -0.12 -1.80 6.09 -26.65 -0.16 -1.97 16 6 C 0.06 1.14 4.93 -3.83 -0.02 1.12 16 7 N -0.53 -9.20 4.80 -236.12 -1.13 -10.33 16 8 C 0.14 2.69 5.89 -4.97 -0.03 2.66 16 9 C 0.06 1.28 5.38 -13.55 -0.07 1.20 16 10 N -0.39 -10.45 7.50 -8.35 -0.06 -10.51 16 11 C 0.22 6.25 6.46 -86.16 -0.56 5.70 16 12 C -0.43 -12.00 9.23 -37.92 -0.35 -12.35 16 13 H 0.08 2.19 7.85 -52.48 -0.41 1.78 16 14 C 0.07 1.92 5.49 -17.35 -0.10 1.83 16 15 N -0.75 -20.09 11.72 55.54 0.65 -19.44 16 16 Si 0.91 19.22 29.56 -169.99 -5.03 14.20 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 20 C -0.45 -11.72 10.98 30.54 0.34 -11.39 16 21 S -0.02 -0.49 23.16 -107.50 -2.49 -2.98 16 22 C 0.06 0.87 4.71 -3.84 -0.02 0.85 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 2.02 5.96 -51.93 -0.31 1.71 16 32 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.14 3.37 8.06 -52.48 -0.42 2.95 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -28.60 310.51 -10.18 -38.78 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.77 Total: 1.98 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -1.03 Total: -16.38 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: -0.55 Total: -40.28 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.49 Total: -2.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.60 -10.18 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082688013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.270 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds