Wall clock time and date at job start Mon Mar 30 2020 07:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49931 * 2 1 4 4 C 1.53118 * 109.50449 * 120.11520 * 2 1 3 5 5 C 1.53118 * 109.15928 * 177.59711 * 4 2 1 6 6 C 1.53041 * 109.27771 * 302.34696 * 5 4 2 7 7 N 1.46842 * 109.52325 * 59.18261 * 6 5 4 8 8 C 1.46903 * 111.00353 * 174.15879 * 7 6 5 9 9 C 1.50702 * 109.46931 * 314.21079 * 8 7 6 10 10 N 1.28795 * 124.99066 * 89.99401 * 9 8 7 11 11 C 1.33650 * 116.05737 * 179.97438 * 10 9 8 12 12 C 1.41159 * 122.86008 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99647 * 174.03567 * 12 11 10 14 14 C 1.39714 * 120.00039 * 354.03437 * 12 11 10 15 15 N 1.31019 * 120.00050 * 6.17525 * 14 12 11 16 16 Si 1.86801 * 119.99675 * 186.17033 * 14 12 11 17 17 H 1.48495 * 109.47396 * 90.00481 * 16 14 12 18 18 H 1.48502 * 109.46866 * 210.00199 * 16 14 12 19 19 H 1.48501 * 109.47257 * 329.99694 * 16 14 12 20 20 C 1.37698 * 114.27516 * 0.02562 * 11 10 9 21 21 S 1.70993 * 108.84008 * 359.76335 * 20 11 10 22 22 C 1.46847 * 111.19932 * 298.25901 * 7 6 5 23 23 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47061 * 300.07432 * 1 2 3 25 25 H 1.09002 * 109.47037 * 60.07733 * 1 2 3 26 26 H 1.08999 * 109.52530 * 297.50539 * 4 2 1 27 27 H 1.08999 * 109.52164 * 57.69472 * 4 2 1 28 28 H 1.09002 * 109.50565 * 182.41123 * 5 4 2 29 29 H 1.08996 * 109.53876 * 62.31255 * 5 4 2 30 30 H 1.08996 * 109.46567 * 299.16402 * 6 5 4 31 31 H 1.09002 * 109.45964 * 179.19851 * 6 5 4 32 32 H 1.09001 * 109.46923 * 74.20474 * 8 7 6 33 33 H 1.08993 * 109.47165 * 194.21014 * 8 7 6 34 34 H 0.97005 * 119.99660 * 179.97438 * 15 14 12 35 35 H 1.08003 * 125.58062 * 180.02562 * 20 11 10 36 36 H 1.09003 * 109.45712 * 301.72463 * 22 7 6 37 37 H 1.09001 * 109.46885 * 181.76300 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7242 1.2485 5 6 3.5712 -0.7722 1.2105 6 6 4.0229 -1.4728 -0.0730 7 7 3.5093 -0.7416 -1.2381 8 6 4.0372 -1.3048 -2.4880 9 6 5.5198 -1.5360 -2.3479 10 7 6.0605 -2.6233 -1.9187 11 6 7.3959 -2.6344 -1.8674 12 6 8.1360 -3.7505 -1.4209 13 1 9.2139 -3.7458 -1.4886 14 6 7.4741 -4.8612 -0.8915 15 7 6.1655 -4.9189 -0.9199 16 14 8.4550 -6.2638 -0.1431 17 1 8.6600 -6.0071 1.3050 18 1 7.7115 -7.5371 -0.3197 19 1 9.7731 -6.3624 -0.8199 20 6 7.9884 -1.4644 -2.2872 21 16 6.7662 -0.3627 -2.7525 22 6 2.0410 -0.7228 -1.2483 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5150 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 1.7156 -0.1877 2.1397 27 1 1.6453 -1.7395 1.2684 28 1 3.9396 -1.3241 2.0752 29 1 3.9684 0.2426 1.2302 30 1 3.6376 -2.4923 -0.0852 31 1 5.1121 -1.4960 -0.1100 32 1 3.5402 -2.2518 -2.6982 33 1 3.8538 -0.6086 -3.3063 34 1 5.7060 -5.6903 -0.5527 35 1 9.0511 -1.2753 -2.3214 36 1 1.6648 -1.7459 -1.2550 37 1 1.6904 -0.2014 -2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082688013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:48 Heat of formation + Delta-G solvation = 10.215956 kcal Electronic energy + Delta-G solvation = -18402.681704 eV Core-core repulsion = 15691.059460 eV Total energy + Delta-G solvation = -2711.622244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47759 -39.36348 -35.77485 -34.84066 -32.87198 -31.45122 -28.47144 -27.50502 -27.34445 -24.40059 -23.40089 -22.22223 -20.61293 -20.35076 -19.50970 -17.18132 -17.01025 -16.97268 -16.13789 -15.64945 -15.39209 -15.15391 -14.90213 -14.51592 -14.28570 -13.87695 -13.45594 -13.41606 -13.31821 -12.95213 -12.87123 -12.67246 -12.56791 -12.41198 -12.21385 -11.92012 -11.56407 -11.50323 -11.24780 -11.20519 -11.09522 -9.91305 -9.88217 -9.37524 -9.18989 -8.48042 -6.39839 0.37149 1.12205 1.35218 1.37556 1.49176 1.76827 2.21496 2.31391 2.99344 3.46627 3.54751 3.83493 3.97680 4.00130 4.21505 4.39791 4.49493 4.51146 4.57512 4.69863 4.76130 4.88517 4.90795 4.92493 4.99048 5.05236 5.09937 5.16642 5.22774 5.30565 5.35071 5.41294 5.50644 5.56982 5.99317 6.15403 6.19908 6.53937 6.87224 7.66280 8.40868 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.006321 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.215795 B = 4428.680293 C = 5356.835709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.071 3.929 7 N -0.528 5.528 8 C 0.144 3.856 9 C 0.060 3.940 10 N -0.430 5.430 11 C 0.196 3.804 12 C -0.473 4.473 13 H 0.080 0.920 14 C 0.032 3.968 15 N -0.781 5.781 16 Si 0.987 3.013 17 H -0.264 1.264 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.486 4.486 21 S 0.032 5.968 22 C 0.059 3.941 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.011 0.989 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.278 0.722 35 H 0.135 0.865 36 H 0.026 0.974 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 6.431 2.574 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.058 4.058 7 N -0.254 5.254 8 C 0.013 3.987 9 C -0.223 4.223 10 N -0.145 5.145 11 C 0.073 3.927 12 C -0.508 4.508 13 H 0.098 0.902 14 C -0.188 4.188 15 N -0.405 5.405 16 Si 0.807 3.193 17 H -0.189 1.189 18 H -0.190 1.190 19 H -0.182 1.182 20 C -0.625 4.625 21 S 0.281 5.719 22 C -0.069 4.069 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.044 0.956 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.768 7.310 2.419 14.064 hybrid contribution 1.379 -2.423 0.420 2.819 sum -10.389 4.888 2.839 11.828 Atomic orbital electron populations 1.21738 0.93042 1.02014 1.02803 1.21143 0.96377 0.99758 0.92958 0.90291 1.21624 0.93693 1.00518 0.98813 1.21560 0.97392 1.00703 0.95309 1.21852 0.98753 0.94027 0.91135 1.62142 1.09259 1.53076 1.00906 1.20617 0.84971 0.99239 0.93905 1.28224 1.00307 0.91799 1.02016 1.67450 1.10678 1.22019 1.14391 1.18413 0.86771 0.93628 0.93869 1.19266 0.94304 0.99140 1.38061 0.90210 1.26827 0.96073 1.01360 0.94513 1.70200 1.09542 1.28542 1.32169 0.85142 0.78890 0.76318 0.78938 1.18858 1.19043 1.18233 1.25419 1.02131 1.00698 1.34217 1.82225 0.99440 1.22148 1.68120 1.22298 0.85169 0.99157 1.00258 0.92964 0.91349 0.91526 0.90011 0.92834 0.92195 0.91396 0.97023 0.94097 0.93380 0.86816 0.91141 0.84706 0.95593 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.20 71.98 0.66 -1.54 16 2 C -0.08 -1.80 2.88 -10.74 -0.03 -1.83 16 3 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 4 C -0.11 -2.58 5.29 30.67 0.16 -2.41 16 5 C -0.11 -3.42 6.09 30.65 0.19 -3.23 16 6 C 0.07 2.75 4.93 86.33 0.43 3.18 16 7 N -0.53 -17.84 4.80 -900.94 -4.32 -22.16 16 8 C 0.14 5.28 5.89 85.56 0.50 5.79 16 9 C 0.06 2.79 5.38 88.55 0.48 3.27 16 10 N -0.43 -23.62 7.50 -180.34 -1.35 -24.97 16 11 C 0.20 11.36 6.46 39.46 0.25 11.62 16 12 C -0.47 -27.26 9.23 23.34 0.22 -27.05 16 13 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 14 C 0.03 1.68 5.49 85.17 0.47 2.15 16 15 N -0.78 -42.95 11.72 21.79 0.26 -42.69 16 16 Si 0.99 40.02 29.56 68.60 2.03 42.04 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 C -0.49 -25.91 10.98 67.69 0.74 -25.17 16 21 S 0.03 1.44 23.16 -56.49 -1.31 0.13 16 22 C 0.06 1.51 4.71 86.32 0.41 1.92 16 23 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 1.97 5.96 -2.39 -0.01 1.95 16 32 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.28 13.93 8.30 -92.70 -0.77 13.16 16 35 H 0.14 6.97 8.06 -2.91 -0.02 6.95 16 36 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 Total: -1.00 -64.45 310.51 0.81 -63.64 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.04 Total: 17.32 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 4.47 Total: -33.31 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -5.42 Total: -89.82 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.31 Total: 0.13 kcal Total: -64.45 0.81 -63.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082688013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.860 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds