Wall clock time and date at job start Mon Mar 30 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 N 1.46908 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.46896 * 111.00211 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.58905 * 324.70237 * 5 4 3 7 7 C 1.52967 * 109.71731 * 204.33299 * 5 4 3 8 8 C 1.53130 * 109.41409 * 188.65787 * 7 5 4 9 9 C 1.53198 * 108.99806 * 70.99206 * 8 7 5 10 10 C 1.51322 * 108.62914 * 310.25787 * 9 8 7 11 11 S 1.70884 * 125.43862 * 196.25299 * 10 9 8 12 12 C 1.75949 * 90.47323 * 179.97438 * 11 10 9 13 13 C 1.39911 * 125.56790 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99685 * 173.40463 * 13 12 11 15 15 C 1.40248 * 120.00303 * 353.41134 * 13 12 11 16 16 N 1.30698 * 119.99624 * 6.49062 * 15 13 12 17 17 Si 1.86793 * 120.00184 * 186.49326 * 15 13 12 18 18 H 1.48499 * 109.47159 * 94.98258 * 17 15 13 19 19 H 1.48494 * 109.47218 * 214.98416 * 17 15 13 20 20 H 1.48494 * 109.47195 * 334.98647 * 17 15 13 21 21 N 1.31362 * 108.85867 * 0.02562 * 12 11 10 22 22 C 1.31378 * 116.61537 * 0.02562 * 21 12 11 23 23 H 1.08996 * 109.47046 * 299.99798 * 1 2 3 24 24 H 1.08999 * 109.47078 * 59.99687 * 1 2 3 25 25 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47236 * 239.99717 * 2 1 3 27 27 H 1.09005 * 109.47040 * 119.99880 * 2 1 3 28 28 H 1.08996 * 109.47036 * 60.00196 * 3 2 1 29 29 H 1.08991 * 109.47220 * 299.99822 * 3 2 1 30 30 H 1.00904 * 110.99777 * 303.95646 * 4 3 2 31 31 H 1.09001 * 109.47862 * 308.63344 * 7 5 4 32 32 H 1.09000 * 109.48382 * 68.67100 * 7 5 4 33 33 H 1.09001 * 109.54385 * 190.84332 * 8 7 5 34 34 H 1.09003 * 109.54387 * 311.02601 * 8 7 5 35 35 H 1.09002 * 109.58490 * 190.53515 * 9 8 7 36 36 H 1.08995 * 109.64418 * 70.02206 * 9 8 7 37 37 H 0.97001 * 119.99766 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.8139 0.0000 6 1 3.3838 3.4558 -0.5927 7 6 5.4451 2.8258 -0.5939 8 6 6.0699 4.2095 -0.3942 9 6 6.3912 4.4019 1.0913 10 6 5.1645 4.0434 1.9015 11 16 4.9003 4.4620 3.5371 12 6 3.3407 3.6478 3.5087 13 6 2.4515 3.5548 4.5848 14 1 1.4710 3.1259 4.4396 15 6 2.8333 4.0186 5.8521 16 7 3.9669 4.6516 6.0021 17 14 1.7217 3.7317 7.3257 18 1 2.1509 2.5009 8.0372 19 1 1.8114 4.8928 8.2469 20 1 0.3192 3.5729 6.8643 21 7 3.1478 3.1416 2.3120 22 6 4.1028 3.3341 1.4305 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.8709 0.9162 0.7805 31 1 6.0568 2.0752 -0.0934 32 1 5.3927 2.6009 -1.6592 33 1 6.9873 4.2831 -0.9783 34 1 5.3677 4.9771 -0.7197 35 1 6.6599 5.4422 1.2752 36 1 7.2193 3.7522 1.3742 37 1 4.2311 4.9721 6.8787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083117216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:03 Heat of formation + Delta-G solvation = -8.547115 kcal Electronic energy + Delta-G solvation = -18240.476542 eV Core-core repulsion = 15528.040671 eV Total energy + Delta-G solvation = -2712.435872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.71382 -35.86528 -35.05250 -33.77092 -32.18008 -28.95595 -28.29418 -26.18984 -24.19726 -22.66474 -21.42423 -20.90538 -20.21736 -18.08828 -17.07163 -16.03498 -15.20231 -15.07340 -14.54038 -14.23814 -13.75162 -13.49795 -13.13844 -12.86336 -12.64713 -12.33812 -12.15414 -11.84351 -11.59774 -11.54426 -11.39087 -11.02709 -10.89608 -10.69668 -10.55127 -10.41473 -10.37217 -10.33850 -9.86986 -9.61719 -9.27014 -7.98379 -7.65445 -7.53994 -7.11858 -6.99564 -4.71837 2.49255 2.91131 2.97543 2.99153 3.48619 3.67534 4.01968 4.06216 4.74412 5.10386 5.33210 5.42968 5.44689 5.52777 5.61621 5.78701 5.81081 5.99803 6.10377 6.13768 6.15657 6.23549 6.29150 6.38982 6.46333 6.50544 6.57455 6.60950 6.68796 6.81226 6.82783 6.87197 7.23582 7.60461 7.69092 7.88255 8.01373 8.31251 8.43476 9.74064 9.82306 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.007766 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.892546 B = 3604.399026 C = 5355.058954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.053 3.947 4 N -0.677 5.677 5 C 0.167 3.833 6 H 0.071 0.929 7 C -0.096 4.096 8 C -0.110 4.110 9 C -0.010 4.010 10 C -0.419 4.419 11 S 0.101 5.899 12 C 0.211 3.789 13 C -0.379 4.379 14 H 0.101 0.899 15 C 0.056 3.944 16 N -0.781 5.781 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.257 1.257 21 N -0.598 5.598 22 C 0.076 3.924 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.340 0.660 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 -2.648 -5.052 5.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.076 4.076 4 N -0.305 5.305 5 C 0.055 3.945 6 H 0.089 0.911 7 C -0.135 4.135 8 C -0.149 4.149 9 C -0.050 4.050 10 C -0.544 4.544 11 S 0.361 5.639 12 C -0.043 4.043 13 C -0.422 4.422 14 H 0.118 0.882 15 C -0.166 4.166 16 N -0.410 5.410 17 Si 0.762 3.238 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.181 1.181 21 N -0.320 5.320 22 C -0.065 4.065 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.002 -2.311 -4.894 5.412 hybrid contribution -0.564 -0.053 0.795 0.976 sum -0.566 -2.363 -4.099 4.765 Atomic orbital electron populations 1.21700 0.96114 1.00969 1.01790 1.21455 0.95171 0.97384 1.01620 1.22040 0.88073 0.95982 1.01521 1.60827 1.07684 1.12915 1.49039 1.20254 0.95295 0.88722 0.90240 0.91100 1.21378 0.95361 0.97010 0.99724 1.21520 0.99602 0.97243 0.96584 1.19625 0.93848 0.99006 0.92475 1.25210 1.04191 1.21062 1.03981 1.84150 1.21088 1.56392 1.02235 1.23664 0.93862 0.93654 0.93153 1.18934 1.00790 1.32052 0.90405 0.88158 1.26148 0.95941 0.93018 1.01473 1.68849 1.19676 1.25567 1.26875 0.85744 0.80396 0.78959 0.78660 1.19043 1.19749 1.18081 1.66928 1.30819 1.32578 1.01705 1.21266 0.90387 0.98646 0.96227 0.92560 0.93093 0.93195 0.92208 0.92423 0.91778 0.92681 0.84306 0.92058 0.92131 0.92562 0.92398 0.93232 0.93348 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.75 6.19 -26.73 -0.17 -1.92 16 3 C 0.05 0.94 5.42 -3.82 -0.02 0.92 16 4 N -0.68 -12.46 6.23 -107.09 -0.67 -13.13 16 5 C 0.17 3.29 2.81 -68.06 -0.19 3.09 16 6 H 0.07 1.41 7.81 -51.93 -0.41 1.01 16 7 C -0.10 -1.63 5.48 -26.68 -0.15 -1.78 16 8 C -0.11 -1.82 5.94 -26.56 -0.16 -1.98 16 9 C -0.01 -0.20 6.24 -27.48 -0.17 -0.37 16 10 C -0.42 -9.85 6.20 -34.77 -0.22 -10.07 16 11 S 0.10 2.56 20.18 -107.50 -2.17 0.39 16 12 C 0.21 5.68 7.13 -17.13 -0.12 5.55 16 13 C -0.38 -9.78 9.44 -38.20 -0.36 -10.14 16 14 H 0.10 2.52 7.86 -52.49 -0.41 2.10 16 15 C 0.06 1.33 5.49 -17.28 -0.09 1.23 16 16 N -0.78 -18.81 10.71 55.56 0.60 -18.22 16 17 Si 0.94 17.57 29.57 -169.99 -5.03 12.54 16 18 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 21 N -0.60 -15.52 8.96 -8.48 -0.08 -15.59 16 22 C 0.08 1.79 6.12 -82.73 -0.51 1.28 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.34 6.63 -51.93 -0.34 0.99 16 29 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 30 H 0.34 6.69 8.48 -39.29 -0.33 6.35 16 31 H 0.06 1.08 8.10 -51.93 -0.42 0.65 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.30 6.41 8.29 -40.82 -0.34 6.07 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -26.69 309.96 -10.15 -36.84 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.69 Total: 8.22 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.78 Total: -15.72 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.15 Total: -46.94 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.17 Total: 0.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.69 -10.15 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083117216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.292 kcal (2) G-P(sol) polarization free energy of solvation -26.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds