Wall clock time and date at job start Mon Mar 30 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 N 1.46908 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.46896 * 111.00211 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.58905 * 324.70237 * 5 4 3 7 7 C 1.52967 * 109.71731 * 204.33299 * 5 4 3 8 8 C 1.53130 * 109.41409 * 188.65787 * 7 5 4 9 9 C 1.53198 * 108.99806 * 70.99206 * 8 7 5 10 10 C 1.51322 * 108.62914 * 310.25787 * 9 8 7 11 11 S 1.70884 * 125.43862 * 196.25299 * 10 9 8 12 12 C 1.75949 * 90.47323 * 179.97438 * 11 10 9 13 13 C 1.39911 * 125.56790 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99685 * 173.40463 * 13 12 11 15 15 C 1.40248 * 120.00303 * 353.41134 * 13 12 11 16 16 N 1.30698 * 119.99624 * 6.49062 * 15 13 12 17 17 Si 1.86793 * 120.00184 * 186.49326 * 15 13 12 18 18 H 1.48499 * 109.47159 * 94.98258 * 17 15 13 19 19 H 1.48494 * 109.47218 * 214.98416 * 17 15 13 20 20 H 1.48494 * 109.47195 * 334.98647 * 17 15 13 21 21 N 1.31362 * 108.85867 * 0.02562 * 12 11 10 22 22 C 1.31378 * 116.61537 * 0.02562 * 21 12 11 23 23 H 1.08996 * 109.47046 * 299.99798 * 1 2 3 24 24 H 1.08999 * 109.47078 * 59.99687 * 1 2 3 25 25 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47236 * 239.99717 * 2 1 3 27 27 H 1.09005 * 109.47040 * 119.99880 * 2 1 3 28 28 H 1.08996 * 109.47036 * 60.00196 * 3 2 1 29 29 H 1.08991 * 109.47220 * 299.99822 * 3 2 1 30 30 H 1.00904 * 110.99777 * 303.95646 * 4 3 2 31 31 H 1.09001 * 109.47862 * 308.63344 * 7 5 4 32 32 H 1.09000 * 109.48382 * 68.67100 * 7 5 4 33 33 H 1.09001 * 109.54385 * 190.84332 * 8 7 5 34 34 H 1.09003 * 109.54387 * 311.02601 * 8 7 5 35 35 H 1.09002 * 109.58490 * 190.53515 * 9 8 7 36 36 H 1.08995 * 109.64418 * 70.02206 * 9 8 7 37 37 H 0.97001 * 119.99766 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.8139 0.0000 6 1 3.3838 3.4558 -0.5927 7 6 5.4451 2.8258 -0.5939 8 6 6.0699 4.2095 -0.3942 9 6 6.3912 4.4019 1.0913 10 6 5.1645 4.0434 1.9015 11 16 4.9003 4.4620 3.5371 12 6 3.3407 3.6478 3.5087 13 6 2.4515 3.5548 4.5848 14 1 1.4710 3.1259 4.4396 15 6 2.8333 4.0186 5.8521 16 7 3.9669 4.6516 6.0021 17 14 1.7217 3.7317 7.3257 18 1 2.1509 2.5009 8.0372 19 1 1.8114 4.8928 8.2469 20 1 0.3192 3.5729 6.8643 21 7 3.1478 3.1416 2.3120 22 6 4.1028 3.3341 1.4305 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.8709 0.9162 0.7805 31 1 6.0568 2.0752 -0.0934 32 1 5.3927 2.6009 -1.6592 33 1 6.9873 4.2831 -0.9783 34 1 5.3677 4.9771 -0.7197 35 1 6.6599 5.4422 1.2752 36 1 7.2193 3.7522 1.3742 37 1 4.2311 4.9721 6.8787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083117216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:03 Heat of formation + Delta-G solvation = -24.173962 kcal Electronic energy + Delta-G solvation = -18241.154173 eV Core-core repulsion = 15528.040671 eV Total energy + Delta-G solvation = -2713.113503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40739 -37.51912 -36.53807 -35.55333 -33.51657 -30.74071 -29.80044 -27.89563 -25.58024 -24.42222 -23.00429 -22.24887 -21.78414 -19.84643 -18.89115 -17.81220 -16.80515 -16.61199 -16.01174 -15.63983 -15.33204 -15.09012 -14.61687 -14.49591 -14.16975 -13.85922 -13.66568 -13.35768 -13.10178 -13.04389 -12.88782 -12.53446 -12.40428 -12.16776 -12.04363 -11.93001 -11.76748 -11.63882 -11.36280 -11.30253 -10.95437 -9.77816 -9.56587 -9.34723 -8.97048 -8.81965 -6.65114 0.65281 1.35743 1.44562 1.53148 1.56029 2.04409 2.19233 2.26145 3.12424 3.34180 3.84517 4.11303 4.13155 4.17310 4.30532 4.36310 4.47083 4.60518 4.63799 4.80807 4.90080 4.93037 4.95742 4.96638 5.01138 5.04517 5.15400 5.21883 5.23480 5.35565 5.43541 5.47255 5.53111 5.81061 5.94702 6.16098 6.39830 6.43333 6.53379 7.85230 8.02859 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.007766 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.892546 B = 3604.399026 C = 5355.058954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.056 3.944 4 N -0.663 5.663 5 C 0.168 3.832 6 H 0.067 0.933 7 C -0.089 4.089 8 C -0.103 4.103 9 C -0.012 4.012 10 C -0.427 4.427 11 S 0.069 5.931 12 C 0.178 3.822 13 C -0.409 4.409 14 H 0.095 0.905 15 C 0.022 3.978 16 N -0.802 5.802 17 Si 1.014 2.986 18 H -0.259 1.259 19 H -0.257 1.257 20 H -0.256 1.256 21 N -0.618 5.618 22 C 0.059 3.941 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.331 0.669 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -3.185 -5.779 6.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.074 4.074 4 N -0.290 5.290 5 C 0.055 3.945 6 H 0.086 0.914 7 C -0.127 4.127 8 C -0.142 4.142 9 C -0.051 4.051 10 C -0.552 4.552 11 S 0.329 5.671 12 C -0.076 4.076 13 C -0.452 4.452 14 H 0.113 0.887 15 C -0.198 4.198 16 N -0.431 5.431 17 Si 0.832 3.168 18 H -0.183 1.183 19 H -0.181 1.181 20 H -0.179 1.179 21 N -0.340 5.340 22 C -0.081 4.081 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.101 -2.842 -5.656 6.330 hybrid contribution -0.571 0.140 1.010 1.168 sum -0.470 -2.702 -4.646 5.395 Atomic orbital electron populations 1.21675 0.94633 1.02286 1.01583 1.21402 0.96422 0.95270 1.01782 1.22044 0.87632 0.97675 1.00044 1.60949 1.08035 1.12009 1.48028 1.20439 0.97258 0.88935 0.87830 0.91448 1.21363 0.93130 0.97233 1.00995 1.21508 1.01249 0.96742 0.94681 1.19764 0.92096 0.99279 0.93962 1.25704 1.05771 1.20596 1.03125 1.83997 1.21202 1.57242 1.04657 1.24131 0.94852 0.94566 0.94040 1.19228 1.00806 1.33459 0.91693 0.88668 1.27127 0.97335 0.91850 1.03497 1.68903 1.20742 1.25126 1.28287 0.84678 0.78062 0.79418 0.74644 1.18293 1.18125 1.17934 1.67004 1.31906 1.33194 1.01934 1.21950 0.89881 0.98506 0.97756 0.94063 0.92018 0.91109 0.90688 0.93471 0.95512 0.91858 0.85268 0.92593 0.89345 0.88792 0.92639 0.92843 0.92679 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.11 -3.19 6.19 30.59 0.19 -3.00 16 3 C 0.06 1.96 5.42 86.30 0.47 2.42 16 4 N -0.66 -24.16 6.23 -492.72 -3.07 -27.23 16 5 C 0.17 6.51 2.81 44.69 0.13 6.63 16 6 H 0.07 2.65 7.81 -2.39 -0.02 2.63 16 7 C -0.09 -2.80 5.48 30.63 0.17 -2.64 16 8 C -0.10 -3.11 5.94 30.70 0.18 -2.93 16 9 C -0.01 -0.43 6.24 30.11 0.19 -0.24 16 10 C -0.43 -20.30 6.20 25.39 0.16 -20.15 16 11 S 0.07 3.62 20.18 -56.49 -1.14 2.48 16 12 C 0.18 9.97 7.13 85.17 0.61 10.58 16 13 C -0.41 -21.88 9.44 23.16 0.22 -21.66 16 14 H 0.10 5.00 7.86 -2.91 -0.02 4.97 16 15 C 0.02 1.03 5.49 85.35 0.47 1.50 16 16 N -0.80 -39.13 10.71 21.88 0.23 -38.89 16 17 Si 1.01 35.62 29.57 68.60 2.03 37.65 16 18 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 19 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 20 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 21 N -0.62 -33.29 8.96 -180.73 -1.62 -34.91 16 22 C 0.06 2.82 6.12 42.67 0.26 3.08 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.03 1.15 6.63 -2.39 -0.02 1.13 16 29 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 30 H 0.33 13.13 8.48 -89.69 -0.76 12.37 16 31 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.31 13.28 8.29 -92.71 -0.77 12.51 16 Total: -1.00 -59.64 309.96 0.48 -59.16 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.30 Total: 30.99 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.75 Total: -29.24 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -4.45 Total: -101.03 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.14 Total: 2.48 kcal Total: -59.64 0.48 -59.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083117216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.985 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds