Wall clock time and date at job start Mon Mar 30 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 H 1.09003 * 109.46805 * 181.47286 * 3 2 1 5 5 C 1.50696 * 109.47305 * 301.47050 * 3 2 1 6 6 H 1.08003 * 119.99694 * 115.63117 * 5 3 2 7 7 C 1.37872 * 120.00332 * 295.63782 * 5 3 2 8 8 N 1.31515 * 120.00097 * 354.12405 * 7 5 3 9 9 Si 1.86805 * 119.99913 * 174.40042 * 7 5 3 10 10 H 1.48497 * 109.47078 * 269.71900 * 9 7 5 11 11 H 1.48496 * 109.47170 * 29.72549 * 9 7 5 12 12 H 1.48505 * 109.46803 * 149.72501 * 9 7 5 13 13 S 1.80996 * 109.47418 * 61.47656 * 3 2 1 14 14 C 1.76207 * 99.99889 * 69.90667 * 13 3 2 15 15 N 1.32550 * 119.22231 * 5.22905 * 14 13 3 16 16 C 1.32263 * 120.73299 * 179.71835 * 15 14 13 17 17 C 1.50701 * 120.40189 * 180.27794 * 16 15 14 18 18 C 1.38627 * 119.20360 * 0.54130 * 16 15 14 19 19 C 1.50698 * 120.71810 * 179.70669 * 18 16 15 20 20 C 1.38624 * 118.56533 * 359.73675 * 18 16 15 21 21 C 1.50706 * 120.39586 * 180.02562 * 20 18 16 22 22 N 1.32259 * 119.20583 * 359.97438 * 20 18 16 23 23 H 1.08999 * 109.46849 * 304.89817 * 1 2 3 24 24 H 1.08998 * 109.46997 * 64.89361 * 1 2 3 25 25 H 1.08996 * 109.47302 * 184.89747 * 1 2 3 26 26 H 1.09002 * 109.47206 * 240.00265 * 2 1 3 27 27 H 1.08996 * 109.47253 * 119.99828 * 2 1 3 28 28 H 0.97001 * 119.99720 * 355.17659 * 8 7 5 29 29 H 1.09002 * 109.46624 * 270.27181 * 17 16 15 30 30 H 1.08999 * 109.46659 * 30.26683 * 17 16 15 31 31 H 1.09000 * 109.47298 * 150.27040 * 17 16 15 32 32 H 1.08993 * 109.47360 * 270.03081 * 19 18 16 33 33 H 1.09006 * 109.46979 * 30.02927 * 19 18 16 34 34 H 1.08999 * 109.46875 * 150.02674 * 19 18 16 35 35 H 1.08996 * 109.47264 * 269.97667 * 21 20 18 36 36 H 1.08997 * 109.47002 * 29.97643 * 21 20 18 37 37 H 1.08994 * 109.46841 * 149.97522 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0264 5 6 1.5081 2.1634 -1.2118 6 1 0.8329 2.9976 -1.0907 7 6 1.8833 1.7579 -2.4750 8 7 2.7928 0.8193 -2.6214 9 14 1.1052 2.5472 -3.9788 10 1 -0.1056 1.7813 -4.3692 11 1 0.7248 3.9472 -3.6621 12 1 2.0783 2.5403 -5.1006 13 16 1.4728 2.2830 1.4993 14 6 2.4501 1.4495 2.7056 15 7 3.3642 0.5763 2.3069 16 6 4.1181 -0.0621 3.1864 17 6 5.1594 -1.0488 2.7246 18 6 3.9351 0.1832 4.5385 19 6 4.7705 -0.5300 5.5702 20 6 2.9666 1.0983 4.9210 21 6 2.7333 1.3968 6.3797 22 7 2.2504 1.7069 3.9905 23 1 -0.3633 0.5880 0.8429 24 1 -0.3633 0.4360 -0.9306 25 1 -0.3634 -1.0239 0.0877 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2501 0.4618 -1.8442 29 1 4.7141 -2.0413 2.6559 30 1 5.5339 -0.7500 1.7455 31 1 5.9830 -1.0686 3.4382 32 1 4.2757 -1.4565 5.8611 33 1 5.7503 -0.7577 5.1501 34 1 4.8900 0.1085 6.4454 35 1 1.9808 0.7143 6.7744 36 1 3.6651 1.2680 6.9304 37 1 2.3855 2.4239 6.4892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086643723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:34 Heat of formation + Delta-G solvation = 19.685754 kcal Electronic energy + Delta-G solvation = -18219.276900 eV Core-core repulsion = 15508.065297 eV Total energy + Delta-G solvation = -2711.211603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74128 -35.29363 -34.52295 -34.35643 -31.28820 -29.26428 -28.82663 -26.83398 -26.55156 -23.86224 -22.54250 -21.47635 -20.17259 -17.83289 -17.47789 -16.23810 -15.38547 -14.67867 -14.23249 -13.84411 -13.73972 -13.67490 -13.39779 -13.31067 -13.14869 -12.93492 -12.49062 -12.39766 -12.30573 -11.72567 -11.65448 -11.45257 -10.86120 -10.75568 -10.30067 -10.24826 -10.13358 -10.11671 -9.85905 -9.26789 -9.14569 -8.81420 -8.67580 -8.42848 -6.89207 -6.45876 -4.20872 1.10820 1.39164 2.10813 3.36001 3.40762 3.43525 3.59866 3.91652 4.38100 4.45947 4.51001 4.80620 4.91540 5.01642 5.26692 5.33398 5.35382 5.47220 5.57297 5.62865 5.66529 5.76595 5.88735 6.05565 6.12614 6.16370 6.34272 6.39567 6.64521 6.87750 6.99507 7.12776 7.30095 7.34072 7.39865 7.87583 8.26546 8.34820 8.68438 9.47472 10.90660 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030951 B = 0.005555 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.452723 B = 5038.887782 C = 5482.277893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.076 3.924 4 H 0.056 0.944 5 C -0.588 4.588 6 H 0.059 0.941 7 C 0.036 3.964 8 N -0.902 5.902 9 Si 1.071 2.929 10 H -0.285 1.285 11 H -0.286 1.286 12 H -0.284 1.284 13 S -0.024 6.024 14 C 0.306 3.694 15 N -0.514 5.514 16 C 0.187 3.813 17 C -0.107 4.107 18 C -0.227 4.227 19 C -0.099 4.099 20 C 0.182 3.818 21 C -0.103 4.103 22 N -0.516 5.516 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.274 0.726 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -3.555 14.660 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C -0.053 4.053 4 H 0.074 0.926 5 C -0.628 4.628 6 H 0.077 0.923 7 C -0.171 4.171 8 N -0.537 5.537 9 Si 0.899 3.101 10 H -0.212 1.212 11 H -0.212 1.212 12 H -0.209 1.209 13 S 0.217 5.783 14 C -0.067 4.067 15 N -0.232 5.232 16 C 0.037 3.963 17 C -0.164 4.164 18 C -0.236 4.236 19 C -0.156 4.156 20 C 0.032 3.968 21 C -0.161 4.161 22 N -0.234 5.234 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.744 -2.180 12.351 12.663 hybrid contribution 1.460 -1.367 2.183 2.961 sum 3.204 -3.547 14.534 15.300 Atomic orbital electron populations 1.21711 0.96653 0.98602 1.02492 1.21673 0.95742 0.97339 1.00373 1.21217 0.99702 0.94322 0.90025 0.92619 1.21472 1.32394 1.18696 0.90274 0.92280 1.25763 0.95649 0.95477 1.00229 1.70727 1.22597 1.25589 1.34786 0.83512 0.75952 0.75577 0.75074 1.21171 1.21243 1.20917 1.85746 1.47493 1.46383 0.98657 1.25561 0.94116 0.93346 0.93681 1.68832 1.06989 1.09263 1.38134 1.21598 0.92973 0.92818 0.88960 1.20795 0.95742 0.96922 1.02935 1.21039 1.02780 1.03592 0.96194 1.20653 0.98625 0.99609 0.96741 1.21529 0.89361 0.89705 0.96251 1.20760 1.02771 1.03543 0.89002 1.68443 1.27329 1.27195 1.00451 0.93215 0.91743 0.95446 0.90942 0.94611 0.91376 0.89904 0.89890 0.90237 0.91302 0.91230 0.91319 0.90015 0.90194 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.41 37.16 0.35 -2.69 16 2 C -0.11 -2.67 5.21 -26.73 -0.14 -2.81 16 3 C 0.08 1.93 1.47 -27.88 -0.04 1.89 16 4 H 0.06 1.54 7.06 -51.91 -0.37 1.17 16 5 C -0.59 -16.00 7.28 -34.44 -0.25 -16.25 16 6 H 0.06 1.63 7.72 -52.48 -0.41 1.22 16 7 C 0.04 0.98 5.26 -17.82 -0.09 0.89 16 8 N -0.90 -26.03 12.86 55.43 0.71 -25.32 16 9 Si 1.07 24.50 29.91 -169.99 -5.08 19.42 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 S -0.02 -0.54 20.10 -107.50 -2.16 -2.70 16 14 C 0.31 6.63 7.58 -90.84 -0.69 5.94 16 15 N -0.51 -10.70 7.33 -9.67 -0.07 -10.77 16 16 C 0.19 3.13 6.82 -82.26 -0.56 2.57 16 17 C -0.11 -1.36 9.83 36.01 0.35 -1.00 16 18 C -0.23 -3.28 5.91 -104.34 -0.62 -3.89 16 19 C -0.10 -0.93 9.28 36.00 0.33 -0.59 16 20 C 0.18 2.86 6.82 -82.26 -0.56 2.30 16 21 C -0.10 -1.11 9.84 36.01 0.35 -0.76 16 22 N -0.52 -10.15 10.34 -9.67 -0.10 -10.25 16 23 H 0.05 1.08 6.80 -51.93 -0.35 0.72 16 24 H 0.06 1.51 7.36 -51.93 -0.38 1.12 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.87 6.20 -51.93 -0.32 1.55 16 27 H 0.04 0.83 6.39 -51.93 -0.33 0.50 16 28 H 0.27 7.97 6.02 -40.82 -0.25 7.72 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 0.76 6.07 -51.93 -0.32 0.45 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.57 6.08 -51.93 -0.32 0.26 16 34 H 0.07 0.53 6.07 -51.93 -0.32 0.22 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.65 6.07 -51.93 -0.32 0.33 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 307.29 15.07 4.63 4.63 Total: -1.00 -31.07 307.29 -8.63 -39.71 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.00 Total: -0.29 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -1.56 Total: -14.41 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.54 Total: -46.34 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.42 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.16 Total: -2.70 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.07 -8.63 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086643723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.393 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds