Wall clock time and date at job start Mon Mar 30 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 H 1.09003 * 109.46805 * 181.47286 * 3 2 1 5 5 C 1.50696 * 109.47305 * 301.47050 * 3 2 1 6 6 H 1.08003 * 119.99694 * 115.63117 * 5 3 2 7 7 C 1.37872 * 120.00332 * 295.63782 * 5 3 2 8 8 N 1.31515 * 120.00097 * 354.12405 * 7 5 3 9 9 Si 1.86805 * 119.99913 * 174.40042 * 7 5 3 10 10 H 1.48497 * 109.47078 * 269.71900 * 9 7 5 11 11 H 1.48496 * 109.47170 * 29.72549 * 9 7 5 12 12 H 1.48505 * 109.46803 * 149.72501 * 9 7 5 13 13 S 1.80996 * 109.47418 * 61.47656 * 3 2 1 14 14 C 1.76207 * 99.99889 * 69.90667 * 13 3 2 15 15 N 1.32550 * 119.22231 * 5.22905 * 14 13 3 16 16 C 1.32263 * 120.73299 * 179.71835 * 15 14 13 17 17 C 1.50701 * 120.40189 * 180.27794 * 16 15 14 18 18 C 1.38627 * 119.20360 * 0.54130 * 16 15 14 19 19 C 1.50698 * 120.71810 * 179.70669 * 18 16 15 20 20 C 1.38624 * 118.56533 * 359.73675 * 18 16 15 21 21 C 1.50706 * 120.39586 * 180.02562 * 20 18 16 22 22 N 1.32259 * 119.20583 * 359.97438 * 20 18 16 23 23 H 1.08999 * 109.46849 * 304.89817 * 1 2 3 24 24 H 1.08998 * 109.46997 * 64.89361 * 1 2 3 25 25 H 1.08996 * 109.47302 * 184.89747 * 1 2 3 26 26 H 1.09002 * 109.47206 * 240.00265 * 2 1 3 27 27 H 1.08996 * 109.47253 * 119.99828 * 2 1 3 28 28 H 0.97001 * 119.99720 * 355.17659 * 8 7 5 29 29 H 1.09002 * 109.46624 * 270.27181 * 17 16 15 30 30 H 1.08999 * 109.46659 * 30.26683 * 17 16 15 31 31 H 1.09000 * 109.47298 * 150.27040 * 17 16 15 32 32 H 1.08993 * 109.47360 * 270.03081 * 19 18 16 33 33 H 1.09006 * 109.46979 * 30.02927 * 19 18 16 34 34 H 1.08999 * 109.46875 * 150.02674 * 19 18 16 35 35 H 1.08996 * 109.47264 * 269.97667 * 21 20 18 36 36 H 1.08997 * 109.47002 * 29.97643 * 21 20 18 37 37 H 1.08994 * 109.46841 * 149.97522 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0264 5 6 1.5081 2.1634 -1.2118 6 1 0.8329 2.9976 -1.0907 7 6 1.8833 1.7579 -2.4750 8 7 2.7928 0.8193 -2.6214 9 14 1.1052 2.5472 -3.9788 10 1 -0.1056 1.7813 -4.3692 11 1 0.7248 3.9472 -3.6621 12 1 2.0783 2.5403 -5.1006 13 16 1.4728 2.2830 1.4993 14 6 2.4501 1.4495 2.7056 15 7 3.3642 0.5763 2.3069 16 6 4.1181 -0.0621 3.1864 17 6 5.1594 -1.0488 2.7246 18 6 3.9351 0.1832 4.5385 19 6 4.7705 -0.5300 5.5702 20 6 2.9666 1.0983 4.9210 21 6 2.7333 1.3968 6.3797 22 7 2.2504 1.7069 3.9905 23 1 -0.3633 0.5880 0.8429 24 1 -0.3633 0.4360 -0.9306 25 1 -0.3634 -1.0239 0.0877 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2501 0.4618 -1.8442 29 1 4.7141 -2.0413 2.6559 30 1 5.5339 -0.7500 1.7455 31 1 5.9830 -1.0686 3.4382 32 1 4.2757 -1.4565 5.8611 33 1 5.7503 -0.7577 5.1501 34 1 4.8900 0.1085 6.4454 35 1 1.9808 0.7143 6.7744 36 1 3.6651 1.2680 6.9304 37 1 2.3855 2.4239 6.4892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086643723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:34 Heat of formation + Delta-G solvation = 1.813214 kcal Electronic energy + Delta-G solvation = -18220.051911 eV Core-core repulsion = 15508.065297 eV Total energy + Delta-G solvation = -2711.986614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07365 -37.25889 -35.83403 -35.56456 -33.31457 -30.45982 -29.78331 -28.78487 -27.71227 -25.84344 -23.84392 -22.71943 -22.12599 -19.50375 -18.92977 -17.98745 -16.75046 -16.37173 -15.70161 -15.56195 -15.35649 -14.97117 -14.80521 -14.57995 -14.34843 -14.09109 -13.66346 -13.51912 -13.38006 -13.30939 -13.20532 -12.71456 -12.59143 -12.44393 -12.11872 -11.99272 -11.89956 -11.62472 -11.33943 -11.03701 -10.71303 -10.60753 -10.45901 -10.20713 -8.65794 -8.60631 -6.40930 -0.24449 0.09765 0.46677 1.52402 1.54844 1.62403 1.80959 2.54746 2.56003 3.12608 3.14900 3.39633 3.55388 3.90708 4.02461 4.27784 4.39086 4.41410 4.46130 4.54535 4.59590 4.60774 4.67560 4.80034 4.94377 4.96659 5.07600 5.09756 5.10630 5.12634 5.14257 5.34013 5.49667 5.58431 5.79880 6.03318 6.07566 6.46851 6.95129 7.34941 8.70427 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030951 B = 0.005555 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.452723 B = 5038.887782 C = 5482.277893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 C 0.084 3.916 4 H 0.020 0.980 5 C -0.597 4.597 6 H 0.051 0.949 7 C -0.007 4.007 8 N -0.922 5.922 9 Si 1.115 2.885 10 H -0.270 1.270 11 H -0.273 1.273 12 H -0.282 1.282 13 S -0.048 6.048 14 C 0.282 3.718 15 N -0.546 5.546 16 C 0.157 3.843 17 C -0.102 4.102 18 C -0.203 4.203 19 C -0.098 4.098 20 C 0.163 3.837 21 C -0.099 4.099 22 N -0.534 5.534 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.261 0.739 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 -4.527 17.201 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C -0.045 4.045 4 H 0.038 0.962 5 C -0.636 4.636 6 H 0.070 0.930 7 C -0.209 4.209 8 N -0.558 5.558 9 Si 0.936 3.064 10 H -0.195 1.195 11 H -0.198 1.198 12 H -0.208 1.208 13 S 0.191 5.809 14 C -0.093 4.093 15 N -0.266 5.266 16 C 0.009 3.991 17 C -0.159 4.159 18 C -0.211 4.211 19 C -0.155 4.155 20 C 0.014 3.986 21 C -0.155 4.155 22 N -0.253 5.253 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.298 -3.178 14.946 15.452 hybrid contribution 1.432 -1.136 1.664 2.471 sum 3.730 -4.314 16.609 17.561 Atomic orbital electron populations 1.21619 0.95107 1.00088 1.01787 1.21505 0.96937 0.96249 0.99160 1.20891 0.97405 0.95198 0.90977 0.96171 1.21694 1.31991 1.18518 0.91411 0.93029 1.27122 0.95343 0.95190 1.03236 1.70838 1.23868 1.26999 1.34102 0.82959 0.75722 0.75662 0.72009 1.19534 1.19789 1.20758 1.85420 1.49125 1.47800 0.98528 1.25038 0.95354 0.94931 0.93984 1.68744 1.07710 1.09939 1.40180 1.22376 0.93376 0.93332 0.90004 1.20913 0.95809 0.96259 1.02897 1.21665 1.01445 1.01622 0.96360 1.20857 0.98489 1.00260 0.95933 1.22481 0.88998 0.89394 0.97751 1.20934 1.05160 1.03763 0.85681 1.68395 1.28601 1.28174 1.00157 0.92869 0.93216 0.92975 0.93346 0.94367 0.92813 0.88615 0.91913 0.86344 0.89167 0.89448 0.88772 0.88187 0.86682 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 9.41 71.98 0.68 -5.12 16 2 C -0.10 -4.91 5.21 30.59 0.16 -4.75 16 3 C 0.08 4.50 1.47 29.85 0.04 4.55 16 4 H 0.02 1.20 7.06 -2.39 -0.02 1.18 16 5 C -0.60 -33.67 7.28 25.60 0.19 -33.48 16 6 H 0.05 2.93 7.72 -2.91 -0.02 2.91 16 7 C -0.01 -0.42 5.26 84.65 0.45 0.02 16 8 N -0.92 -55.10 12.86 21.45 0.28 -54.82 16 9 Si 1.12 49.80 29.91 68.60 2.05 51.85 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 S -0.05 -2.31 20.10 -56.49 -1.14 -3.44 16 14 C 0.28 12.54 7.58 180.43 1.37 13.91 16 15 N -0.55 -23.39 7.33 -184.50 -1.35 -24.74 16 16 C 0.16 5.12 6.82 42.59 0.29 5.41 16 17 C -0.10 -2.42 9.83 71.24 0.70 -1.72 16 18 C -0.20 -5.26 5.91 -19.68 -0.12 -5.38 16 19 C -0.10 -1.32 9.28 71.24 0.66 -0.65 16 20 C 0.16 4.76 6.82 42.59 0.29 5.05 16 21 C -0.10 -1.74 9.84 71.24 0.70 -1.04 16 22 N -0.53 -20.99 10.34 -184.50 -1.91 -22.90 16 23 H 0.05 2.34 6.80 -2.39 -0.02 2.33 16 24 H 0.05 2.36 7.36 -2.39 -0.02 2.34 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 2.62 6.20 -2.39 -0.01 2.61 16 27 H 0.04 1.85 6.39 -2.39 -0.02 1.83 16 28 H 0.26 16.00 6.02 -92.71 -0.56 15.44 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.12 1.82 6.07 -2.39 -0.01 1.80 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.93 6.08 -2.38 -0.01 0.91 16 34 H 0.09 0.85 6.07 -2.39 -0.01 0.84 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 1.22 6.07 -2.39 -0.01 1.21 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.08 307.29 4.62 -67.46 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.28 Total: 9.81 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 5.41 Total: -23.21 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -2.98 Total: -102.46 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -1.14 Total: -3.44 kcal Total: -72.08 4.62 -67.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086643723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.270 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds