Wall clock time and date at job start Mon Mar 30 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91330 * 2 1 4 4 C 1.31784 * 117.12534 * 180.02562 * 3 2 1 5 5 C 1.50694 * 122.75124 * 179.72919 * 4 3 2 6 6 N 1.46900 * 109.47381 * 287.75152 * 5 4 3 7 7 C 1.46898 * 111.00168 * 289.17089 * 6 5 4 8 8 C 1.46901 * 111.00428 * 165.20956 * 6 5 4 9 9 C 1.52994 * 109.47126 * 196.95311 * 8 6 5 10 10 C 1.50701 * 115.55259 * 62.48295 * 9 8 6 11 11 H 1.08000 * 120.00266 * 264.52643 * 10 9 8 12 12 C 1.37879 * 119.99841 * 84.52332 * 10 9 8 13 13 N 1.31517 * 119.99981 * 176.82673 * 12 10 9 14 14 Si 1.86803 * 120.00236 * 356.82863 * 12 10 9 15 15 H 1.48494 * 109.47066 * 90.22848 * 14 12 10 16 16 H 1.48500 * 109.47323 * 210.23406 * 14 12 10 17 17 H 1.48500 * 109.46855 * 330.23234 * 14 12 10 18 18 C 1.52996 * 117.49925 * 276.80950 * 9 8 6 19 19 C 1.53003 * 117.49859 * 208.15402 * 9 8 6 20 20 C 1.33646 * 114.49704 * 0.02562 * 4 3 2 21 21 S 1.70974 * 124.91998 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47017 * 89.99925 * 1 2 3 23 23 H 1.08999 * 109.47149 * 209.99830 * 1 2 3 24 24 H 1.08994 * 109.47252 * 330.00005 * 1 2 3 25 25 H 1.08999 * 109.47392 * 47.75418 * 5 4 3 26 26 H 1.09004 * 109.47351 * 167.75344 * 5 4 3 27 27 H 1.08997 * 109.47482 * 54.39489 * 7 6 5 28 28 H 1.08996 * 109.47223 * 174.39911 * 7 6 5 29 29 H 1.09007 * 109.46798 * 294.39679 * 7 6 5 30 30 H 1.08998 * 109.46857 * 316.95514 * 8 6 5 31 31 H 1.08995 * 109.46771 * 76.95258 * 8 6 5 32 32 H 0.96997 * 119.99855 * 179.97438 * 13 12 10 33 33 H 1.09001 * 117.50193 * 0.02562 * 18 9 8 34 34 H 1.09007 * 117.49641 * 145.02555 * 18 9 8 35 35 H 1.08999 * 117.49953 * 214.98388 * 19 9 8 36 36 H 1.09000 * 117.49805 * 359.97109 * 19 9 8 37 37 H 1.07996 * 126.03139 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0066 6 7 4.5267 2.6655 -1.3285 7 6 5.1515 1.7980 -2.3359 8 6 5.1874 3.9766 -1.2800 9 6 4.8062 4.7860 -2.5211 10 6 3.3409 5.1088 -2.6619 11 1 2.7043 4.4776 -3.2643 12 6 2.8129 6.2098 -2.0216 13 7 1.5484 6.5274 -2.1943 14 14 3.8936 7.2505 -0.9087 15 1 4.5265 8.3328 -1.7045 16 1 3.0645 7.8482 0.1686 17 1 4.9492 6.3977 -0.3054 18 6 5.5991 4.5277 -3.8038 19 6 5.8101 5.8265 -3.0218 20 6 3.9354 -0.4005 -0.0015 21 16 2.4857 -1.4019 -0.0006 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 4.2425 2.7533 0.7512 26 1 5.5303 1.6491 0.2121 27 1 4.6622 0.8240 -2.3306 28 1 5.0469 2.2518 -3.3213 29 1 6.2093 1.6744 -2.1032 30 1 4.8683 4.5113 -0.3854 31 1 6.2682 3.8381 -1.2544 32 1 1.1769 7.3017 -1.7435 33 1 6.3920 3.7809 -3.7637 34 1 5.0609 4.5917 -4.7496 35 1 5.4106 6.7443 -3.4532 36 1 6.7418 5.9347 -2.4666 37 1 4.9545 -0.7579 -0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:48 Heat of formation + Delta-G solvation = 84.321060 kcal Electronic energy + Delta-G solvation = -18292.456521 eV Core-core repulsion = 15584.047716 eV Total energy + Delta-G solvation = -2708.408806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77263 -37.75467 -35.26478 -32.18384 -31.85804 -28.52373 -27.35681 -27.01109 -25.18510 -23.03087 -21.51087 -21.35929 -19.49672 -18.81508 -17.36311 -16.15537 -15.29864 -15.23692 -14.93643 -14.27921 -14.19982 -14.06245 -13.52641 -13.24378 -12.63549 -12.62575 -12.43539 -12.15692 -12.03529 -11.87050 -11.47971 -11.34549 -10.98003 -10.86434 -10.40970 -10.27461 -9.92235 -9.50581 -9.31461 -9.21169 -8.87513 -8.57191 -8.40063 -8.34466 -7.54600 -5.90167 -3.87823 0.87208 1.51106 1.86000 3.02327 3.39127 3.47577 3.49296 4.25514 4.53115 4.57549 5.06408 5.12840 5.27280 5.36065 5.39212 5.44984 5.55051 5.68582 5.79640 5.87820 5.90997 5.97750 6.03228 6.12990 6.22563 6.27281 6.35343 6.43687 6.51668 6.63180 6.79978 7.16011 7.25029 7.67730 7.79681 7.96106 8.09617 8.73784 9.16660 9.73620 11.23064 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.006022 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.920120 B = 4648.683402 C = 5305.177768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.438 5.438 4 C 0.099 3.901 5 C 0.125 3.875 6 N -0.505 5.505 7 C 0.028 3.972 8 C 0.094 3.906 9 C 0.014 3.986 10 C -0.454 4.454 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.903 5.903 14 Si 0.876 3.124 15 H -0.282 1.282 16 H -0.296 1.296 17 H -0.261 1.261 18 C -0.184 4.184 19 C -0.204 4.204 20 C -0.266 4.266 21 S 0.079 5.921 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.011 0.989 30 H 0.073 0.927 31 H 0.009 0.991 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 -14.851 5.379 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.224 4.224 3 N -0.152 5.152 4 C -0.033 4.033 5 C -0.006 4.006 6 N -0.227 5.227 7 C -0.120 4.120 8 C -0.033 4.033 9 C 0.013 3.987 10 C -0.492 4.492 11 H 0.094 0.906 12 C -0.126 4.126 13 N -0.542 5.542 14 Si 0.705 3.295 15 H -0.208 1.208 16 H -0.223 1.223 17 H -0.186 1.186 18 C -0.221 4.221 19 C -0.241 4.241 20 C -0.405 4.405 21 S 0.332 5.668 22 H 0.105 0.895 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.365 -15.199 5.300 16.445 hybrid contribution 2.054 1.179 0.782 2.494 sum 5.419 -14.020 6.082 16.215 Atomic orbital electron populations 1.20441 0.85336 1.03896 1.04061 1.27150 1.01809 0.90235 1.03183 1.66104 1.04520 1.30565 1.14042 1.20239 0.90271 0.93525 0.99286 1.20623 0.93261 0.92980 0.93693 1.61558 1.55383 1.02460 1.03335 1.22457 0.94857 0.96906 0.97791 1.22009 0.92505 0.88487 1.00301 1.19364 0.93914 0.95510 0.89952 1.20111 0.89379 1.09783 1.29923 0.90559 1.24899 0.94633 0.97086 0.95994 1.69896 1.13043 1.27450 1.43823 0.86946 0.80843 0.80810 0.80940 1.20795 1.22286 1.18593 1.22829 1.03017 0.98271 0.97990 1.23018 1.00704 0.94323 1.06100 1.26736 1.02543 0.95730 1.15510 1.83719 0.98821 1.14084 1.70152 0.89470 0.90524 0.89038 0.89330 0.94043 0.92824 0.90189 0.97031 0.90914 0.97316 0.92967 0.91352 0.89698 0.89419 0.91388 0.81148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.46 36.01 0.38 -0.49 16 2 C 0.06 0.82 7.39 -13.46 -0.10 0.72 16 3 N -0.44 -8.09 10.53 -8.06 -0.08 -8.17 16 4 C 0.10 1.66 5.42 -84.22 -0.46 1.21 16 5 C 0.13 2.16 5.45 -4.98 -0.03 2.13 16 6 N -0.50 -10.13 4.52 -244.38 -1.10 -11.23 16 7 C 0.03 0.49 8.86 60.06 0.53 1.02 16 8 C 0.09 2.00 4.50 -3.83 -0.02 1.99 16 9 C 0.01 0.33 0.75 -155.66 -0.12 0.21 16 10 C -0.45 -12.98 9.26 -34.44 -0.32 -13.29 16 11 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 12 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 14 Si 0.88 22.16 25.18 -169.99 -4.28 17.88 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 17 H -0.26 -6.17 5.41 56.52 0.31 -5.86 16 18 C -0.18 -3.79 8.23 -26.70 -0.22 -4.01 16 19 C -0.20 -4.40 7.80 -26.70 -0.21 -4.60 16 20 C -0.27 -3.59 10.63 29.12 0.31 -3.28 16 21 S 0.08 0.95 23.18 -107.50 -2.49 -1.55 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 26 H 0.04 0.60 7.97 -51.93 -0.41 0.19 16 27 H 0.05 0.88 6.95 -51.93 -0.36 0.52 16 28 H 0.08 1.48 5.79 -51.93 -0.30 1.18 16 29 H 0.01 0.18 8.07 -51.92 -0.42 -0.24 16 30 H 0.07 1.64 5.62 -51.93 -0.29 1.35 16 31 H 0.01 0.17 7.95 -51.93 -0.41 -0.24 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.07 1.24 7.45 -51.93 -0.39 0.85 16 34 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.09 2.00 7.60 -51.93 -0.39 1.60 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -32.63 311.49 -8.41 -41.04 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.57 Total: 1.22 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -0.34 Total: -16.32 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.42 Total: -46.97 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.28 Total: 17.88 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.63 -8.41 -41.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.363 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds