Wall clock time and date at job start Mon Mar 30 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91330 * 2 1 4 4 C 1.31784 * 117.12534 * 180.02562 * 3 2 1 5 5 C 1.50694 * 122.75124 * 179.72919 * 4 3 2 6 6 N 1.46900 * 109.47381 * 287.75152 * 5 4 3 7 7 C 1.46898 * 111.00168 * 289.17089 * 6 5 4 8 8 C 1.46901 * 111.00428 * 165.20956 * 6 5 4 9 9 C 1.52994 * 109.47126 * 196.95311 * 8 6 5 10 10 C 1.50701 * 115.55259 * 62.48295 * 9 8 6 11 11 H 1.08000 * 120.00266 * 264.52643 * 10 9 8 12 12 C 1.37879 * 119.99841 * 84.52332 * 10 9 8 13 13 N 1.31517 * 119.99981 * 176.82673 * 12 10 9 14 14 Si 1.86803 * 120.00236 * 356.82863 * 12 10 9 15 15 H 1.48494 * 109.47066 * 90.22848 * 14 12 10 16 16 H 1.48500 * 109.47323 * 210.23406 * 14 12 10 17 17 H 1.48500 * 109.46855 * 330.23234 * 14 12 10 18 18 C 1.52996 * 117.49925 * 276.80950 * 9 8 6 19 19 C 1.53003 * 117.49859 * 208.15402 * 9 8 6 20 20 C 1.33646 * 114.49704 * 0.02562 * 4 3 2 21 21 S 1.70974 * 124.91998 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47017 * 89.99925 * 1 2 3 23 23 H 1.08999 * 109.47149 * 209.99830 * 1 2 3 24 24 H 1.08994 * 109.47252 * 330.00005 * 1 2 3 25 25 H 1.08999 * 109.47392 * 47.75418 * 5 4 3 26 26 H 1.09004 * 109.47351 * 167.75344 * 5 4 3 27 27 H 1.08997 * 109.47482 * 54.39489 * 7 6 5 28 28 H 1.08996 * 109.47223 * 174.39911 * 7 6 5 29 29 H 1.09007 * 109.46798 * 294.39679 * 7 6 5 30 30 H 1.08998 * 109.46857 * 316.95514 * 8 6 5 31 31 H 1.08995 * 109.46771 * 76.95258 * 8 6 5 32 32 H 0.96997 * 119.99855 * 179.97438 * 13 12 10 33 33 H 1.09001 * 117.50193 * 0.02562 * 18 9 8 34 34 H 1.09007 * 117.49641 * 145.02555 * 18 9 8 35 35 H 1.08999 * 117.49953 * 214.98388 * 19 9 8 36 36 H 1.09000 * 117.49805 * 359.97109 * 19 9 8 37 37 H 1.07996 * 126.03139 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0066 6 7 4.5267 2.6655 -1.3285 7 6 5.1515 1.7980 -2.3359 8 6 5.1874 3.9766 -1.2800 9 6 4.8062 4.7860 -2.5211 10 6 3.3409 5.1088 -2.6619 11 1 2.7043 4.4776 -3.2643 12 6 2.8129 6.2098 -2.0216 13 7 1.5484 6.5274 -2.1943 14 14 3.8936 7.2505 -0.9087 15 1 4.5265 8.3328 -1.7045 16 1 3.0645 7.8482 0.1686 17 1 4.9492 6.3977 -0.3054 18 6 5.5991 4.5277 -3.8038 19 6 5.8101 5.8265 -3.0218 20 6 3.9354 -0.4005 -0.0015 21 16 2.4857 -1.4019 -0.0006 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 4.2425 2.7533 0.7512 26 1 5.5303 1.6491 0.2121 27 1 4.6622 0.8240 -2.3306 28 1 5.0469 2.2518 -3.3213 29 1 6.2093 1.6744 -2.1032 30 1 4.8683 4.5113 -0.3854 31 1 6.2682 3.8381 -1.2544 32 1 1.1769 7.3017 -1.7435 33 1 6.3920 3.7809 -3.7637 34 1 5.0609 4.5917 -4.7496 35 1 5.4106 6.7443 -3.4532 36 1 6.7418 5.9347 -2.4666 37 1 4.9545 -0.7579 -0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:48 Heat of formation + Delta-G solvation = 61.076173 kcal Electronic energy + Delta-G solvation = -18293.464495 eV Core-core repulsion = 15584.047716 eV Total energy + Delta-G solvation = -2709.416780 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93345 -39.36793 -36.79225 -34.11328 -33.23605 -29.65946 -28.85478 -28.32562 -27.22677 -24.28474 -23.19707 -22.67568 -20.77917 -20.54894 -18.53285 -18.12839 -16.87811 -16.59880 -16.40674 -15.69837 -15.59753 -15.43849 -14.94764 -14.73321 -14.38347 -13.88703 -13.81418 -13.44912 -13.29840 -13.11026 -12.99805 -12.88560 -12.62411 -12.24543 -12.15734 -12.03745 -11.72795 -11.46152 -10.81302 -10.51701 -10.41619 -10.27862 -10.20502 -9.59743 -8.94038 -8.17306 -6.18909 -0.18812 0.50942 0.79730 1.37560 1.39533 1.50891 1.85195 2.44302 3.04359 3.18923 3.24515 3.50573 3.99082 4.13849 4.27228 4.33124 4.38270 4.42365 4.46638 4.51265 4.55218 4.63202 4.66272 4.70331 4.81879 4.88295 4.95180 5.03969 5.10305 5.15479 5.26611 5.46473 5.54919 5.80584 6.31192 6.34999 6.50237 6.86430 7.02220 7.46270 9.00294 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.006022 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.920120 B = 4648.683402 C = 5305.177768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.028 3.972 3 N -0.500 5.500 4 C 0.066 3.934 5 C 0.129 3.871 6 N -0.540 5.540 7 C 0.035 3.965 8 C 0.104 3.896 9 C -0.016 4.016 10 C -0.448 4.448 11 H 0.018 0.982 12 C 0.012 3.988 13 N -0.960 5.960 14 Si 0.939 3.061 15 H -0.270 1.270 16 H -0.304 1.304 17 H -0.229 1.229 18 C -0.163 4.163 19 C -0.195 4.195 20 C -0.257 4.257 21 S 0.155 5.845 22 H 0.088 0.912 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.259 0.741 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -16.860 6.329 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.250 4.250 3 N -0.216 5.216 4 C -0.066 4.066 5 C -0.002 4.002 6 N -0.264 5.264 7 C -0.113 4.113 8 C -0.024 4.024 9 C -0.017 4.017 10 C -0.486 4.486 11 H 0.036 0.964 12 C -0.183 4.183 13 N -0.602 5.602 14 Si 0.764 3.236 15 H -0.196 1.196 16 H -0.231 1.231 17 H -0.152 1.152 18 C -0.201 4.201 19 C -0.233 4.233 20 C -0.397 4.397 21 S 0.410 5.590 22 H 0.107 0.893 23 H 0.129 0.871 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.544 -17.244 6.240 19.471 hybrid contribution 0.976 1.619 0.396 1.932 sum 7.521 -15.625 6.637 18.567 Atomic orbital electron populations 1.20569 0.83906 1.04919 1.04441 1.27602 1.03181 0.91232 1.02967 1.66090 1.05986 1.33267 1.16227 1.20232 0.89870 0.94581 1.01959 1.20597 0.95126 0.92821 0.91611 1.61414 1.56675 1.02866 1.05456 1.22368 0.96435 0.96304 0.96153 1.21760 0.94252 0.88726 0.97662 1.19273 0.91173 0.98300 0.92933 1.20227 0.92011 1.08315 1.28075 0.96383 1.25788 0.95896 0.98803 0.97855 1.70078 1.15553 1.28601 1.45928 0.85922 0.79610 0.79368 0.78705 1.19578 1.23136 1.15232 1.22827 1.02620 0.98661 0.95945 1.23050 1.00937 0.93556 1.05761 1.27121 1.04701 0.95052 1.12827 1.83380 0.96514 1.11070 1.68072 0.89327 0.87085 0.90480 0.91449 0.90744 0.92410 0.92034 0.94089 0.92850 0.94071 0.93186 0.87753 0.91196 0.91166 0.87923 0.78151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 10.46 71.24 0.75 -1.01 16 2 C 0.03 0.81 7.39 88.52 0.65 1.47 16 3 N -0.50 -18.76 10.53 -179.40 -1.89 -20.65 16 4 C 0.07 2.14 5.42 41.52 0.23 2.37 16 5 C 0.13 4.27 5.45 85.56 0.47 4.74 16 6 N -0.54 -21.13 4.52 -927.08 -4.19 -25.32 16 7 C 0.04 1.14 8.86 127.69 1.13 2.27 16 8 C 0.10 4.18 4.50 86.30 0.39 4.57 16 9 C -0.02 -0.71 0.75 -52.93 -0.04 -0.75 16 10 C -0.45 -26.65 9.26 25.60 0.24 -26.41 16 11 H 0.02 1.24 8.06 -2.91 -0.02 1.21 16 12 C 0.01 0.71 5.47 84.65 0.46 1.17 16 13 N -0.96 -63.52 13.96 21.45 0.30 -63.22 16 14 Si 0.94 46.23 25.18 68.60 1.73 47.96 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 17 H -0.23 -10.05 5.41 99.48 0.54 -9.51 16 18 C -0.16 -6.40 8.23 30.61 0.25 -6.15 16 19 C -0.20 -7.90 7.80 30.62 0.24 -7.66 16 20 C -0.26 -6.22 10.63 66.78 0.71 -5.51 16 21 S 0.16 3.32 23.18 -56.49 -1.31 2.01 16 22 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 25 H 0.07 2.44 7.74 -2.39 -0.02 2.42 16 26 H 0.07 1.91 7.97 -2.39 -0.02 1.89 16 27 H 0.06 1.79 6.95 -2.39 -0.02 1.77 16 28 H 0.06 2.18 5.79 -2.39 -0.01 2.17 16 29 H 0.04 1.08 8.07 -2.38 -0.02 1.06 16 30 H 0.05 2.32 5.62 -2.39 -0.01 2.31 16 31 H 0.04 1.39 7.95 -2.39 -0.02 1.38 16 32 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 33 H 0.10 3.35 7.45 -2.39 -0.02 3.33 16 34 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 35 H 0.07 3.08 7.60 -2.39 -0.02 3.06 16 36 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.20 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -75.97 311.49 0.99 -74.98 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.88 Total: 15.16 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 5.47 Total: -30.91 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -5.78 Total: -109.19 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.73 Total: 47.96 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.31 Total: 2.01 kcal Total: -75.97 0.99 -74.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.054 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds