Wall clock time and date at job start Mon Mar 30 2020 07:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47807 * 2 1 4 4 C 1.50704 * 109.46930 * 120.00065 * 2 1 3 5 5 H 1.08003 * 120.00012 * 120.00318 * 4 2 1 6 6 C 1.37872 * 120.00233 * 299.99482 * 4 2 1 7 7 N 1.31519 * 119.99841 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00578 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47234 * 89.99903 * 8 6 4 10 10 H 1.48494 * 109.47662 * 210.00190 * 8 6 4 11 11 H 1.48502 * 109.46886 * 330.00298 * 8 6 4 12 12 N 1.46902 * 109.46911 * 239.99635 * 2 1 3 13 13 C 1.46954 * 110.99705 * 60.00465 * 12 2 1 14 14 C 1.53056 * 109.36119 * 183.18504 * 13 12 2 15 15 N 1.46954 * 109.36674 * 301.59658 * 14 13 12 16 16 C 1.39615 * 110.99816 * 183.18753 * 15 14 13 17 17 C 1.34099 * 125.23168 * 179.71758 * 16 15 14 18 18 C 1.38594 * 114.71505 * 180.26691 * 17 16 15 19 19 C 1.33219 * 114.98545 * 0.02562 * 18 17 16 20 20 S 1.75860 * 109.74738 * 359.97438 * 19 18 17 21 21 C 1.46961 * 110.88057 * 59.32112 * 15 14 13 22 22 C 1.46959 * 110.99645 * 183.80016 * 12 2 1 23 23 H 1.09003 * 109.46694 * 299.99886 * 1 2 3 24 24 H 1.09003 * 109.47072 * 59.99970 * 1 2 3 25 25 H 1.08998 * 109.47000 * 180.02562 * 1 2 3 26 26 H 0.96993 * 120.00029 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.49387 * 63.22111 * 13 12 2 28 28 H 1.09001 * 109.48905 * 303.14829 * 13 12 2 29 29 H 1.09002 * 109.48724 * 181.62432 * 14 13 12 30 30 H 1.08998 * 109.48674 * 61.56757 * 14 13 12 31 31 H 1.07995 * 122.64560 * 0.24465 * 17 16 15 32 32 H 1.08001 * 122.50391 * 180.02562 * 18 17 16 33 33 H 1.08001 * 125.13070 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.48636 * 60.64437 * 21 15 14 35 35 H 1.08996 * 109.48806 * 180.71233 * 21 15 14 36 36 H 1.08998 * 109.49346 * 296.77993 * 22 12 2 37 37 H 1.08996 * 109.49248 * 56.84913 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 7 2.0196 -0.6926 -1.1994 13 6 1.5485 -0.0262 -2.4215 14 6 2.0124 -0.8214 -3.6442 15 7 3.4786 -0.9203 -3.6336 16 6 3.9439 -1.5785 -4.7735 17 6 5.2325 -1.8192 -5.0560 18 6 5.4489 -2.4852 -6.2520 19 6 4.3462 -2.7835 -6.9375 20 16 2.9308 -2.2125 -6.0639 21 6 3.9498 -1.5867 -2.4114 22 6 3.4858 -0.7914 -1.1887 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.7083 1.1609 3.4844 27 1 1.9586 0.9827 -2.4669 28 1 0.4596 0.0236 -2.4118 29 1 1.6887 -0.3134 -4.5526 30 1 1.5802 -1.8216 -3.6129 31 1 6.0382 -1.5176 -4.4032 32 1 6.4375 -2.7429 -6.6021 33 1 4.3247 -3.2984 -7.8866 34 1 3.5396 -2.5955 -2.3661 35 1 5.0386 -1.6365 -2.4212 36 1 3.9181 0.2087 -1.2201 37 1 3.8095 -1.2995 -0.2804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152468890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:31 Heat of formation + Delta-G solvation = 51.976113 kcal Electronic energy + Delta-G solvation = -18254.492288 eV Core-core repulsion = 15544.680900 eV Total energy + Delta-G solvation = -2709.811388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46839 -37.41059 -35.37424 -32.69700 -30.77923 -29.86807 -27.84879 -25.65461 -25.09648 -23.04019 -22.94645 -20.37405 -19.32443 -18.98784 -17.84062 -16.35075 -15.82124 -15.21358 -14.72534 -14.44646 -14.23965 -14.11647 -13.59273 -13.54594 -12.81468 -12.54535 -12.34093 -12.14080 -11.84867 -11.67668 -11.08601 -10.96909 -10.96435 -10.74406 -10.59518 -10.54234 -10.18880 -10.04997 -9.80850 -9.59242 -8.88473 -8.46945 -8.45549 -7.71193 -7.27290 -6.04992 -4.10147 1.08773 1.54638 2.01415 2.80236 3.28031 3.35115 3.38560 3.82107 4.36910 4.82132 5.09042 5.12652 5.26602 5.30899 5.41927 5.51513 5.62386 5.64683 5.76111 5.90318 5.96795 6.11798 6.23300 6.31720 6.43336 6.52375 6.60303 6.79434 6.90824 7.00549 7.09620 7.11756 7.46279 7.65588 7.77864 8.12603 8.26498 8.52297 8.95553 9.55259 11.01793 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038945 B = 0.004462 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.783583 B = 6273.256198 C = 6751.408441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.055 3.945 14 C 0.049 3.951 15 N -0.452 5.452 16 C 0.039 3.961 17 C -0.194 4.194 18 C -0.106 4.106 19 C -0.243 4.243 20 S 0.066 5.934 21 C 0.060 3.940 22 C 0.064 3.936 23 H 0.086 0.914 24 H 0.008 0.992 25 H 0.034 0.966 26 H 0.261 0.739 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.032 0.968 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 -4.943 -15.292 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.261 5.261 13 C -0.074 4.074 14 C -0.078 4.078 15 N -0.168 5.168 16 C -0.177 4.177 17 C -0.227 4.227 18 C -0.137 4.137 19 C -0.379 4.379 20 S 0.325 5.675 21 C -0.066 4.066 22 C -0.064 4.064 23 H 0.104 0.896 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.176 0.824 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.501 -4.836 -15.329 16.450 hybrid contribution 1.849 -0.197 1.004 2.113 sum 5.350 -5.033 -14.325 16.099 Atomic orbital electron populations 1.21843 0.97599 0.99671 0.99979 1.19243 0.92392 0.92055 0.85584 0.98217 1.21120 1.31249 1.12333 0.89747 0.91893 1.24925 0.95120 0.95044 0.99034 1.69888 1.36723 1.23011 1.23494 0.86525 0.78488 0.80061 0.82510 1.20752 1.21241 1.19839 1.62337 1.08418 1.52805 1.02490 1.22114 1.00610 0.95218 0.89500 1.22473 0.84486 1.01088 0.99776 1.59214 1.11918 1.45481 1.00211 1.23800 0.96481 0.99952 0.97496 1.19924 0.95170 1.07686 0.99870 1.19932 0.99120 0.99984 0.94623 1.25255 0.95207 1.11489 1.05901 1.84420 1.10694 1.55682 1.16693 1.22547 0.99852 0.96741 0.87433 1.22067 0.89498 0.98609 0.96257 0.89567 0.97290 0.94654 0.92927 0.94855 0.89755 0.90350 0.92544 0.84320 0.84617 0.82378 0.92951 0.90235 0.94965 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.74 37.16 0.32 -2.85 16 2 C 0.21 5.27 2.06 -68.86 -0.14 5.12 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 4 C -0.51 -13.48 7.89 -34.44 -0.27 -13.75 16 5 H 0.06 1.66 6.41 -52.48 -0.34 1.33 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.53 -11.24 4.57 -227.87 -1.04 -12.28 16 13 C 0.05 0.99 5.32 -3.77 -0.02 0.97 16 14 C 0.05 0.77 4.67 -3.77 -0.02 0.76 16 15 N -0.45 -7.12 4.80 -172.11 -0.83 -7.94 16 16 C 0.04 0.55 6.03 -15.46 -0.09 0.46 16 17 C -0.19 -2.52 9.54 -40.91 -0.39 -2.91 16 18 C -0.11 -1.18 10.18 -41.20 -0.42 -1.60 16 19 C -0.24 -2.65 11.21 28.98 0.32 -2.33 16 20 S 0.07 0.82 21.48 -107.50 -2.31 -1.48 16 21 C 0.06 0.97 5.44 -3.76 -0.02 0.95 16 22 C 0.06 1.24 5.33 -3.76 -0.02 1.22 16 23 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 24 H 0.01 0.18 6.34 -51.93 -0.33 -0.15 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.49 6.14 -51.93 -0.32 1.18 16 29 H 0.08 1.10 7.66 -51.93 -0.40 0.71 16 30 H 0.06 0.90 7.96 -51.93 -0.41 0.48 16 31 H 0.14 1.68 7.64 -52.49 -0.40 1.28 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.13 7.32 -51.93 -0.38 0.75 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.96 6.14 -51.93 -0.32 1.65 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -27.91 301.53 -10.17 -38.08 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.30 Total: 0.03 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.84 Total: -12.44 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -1.24 Total: -44.64 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.31 Total: -1.48 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.91 -10.17 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.054 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds