Wall clock time and date at job start Mon Mar 30 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47142 * 2 1 4 4 C 1.50703 * 109.47057 * 240.00322 * 2 1 3 5 5 H 1.07996 * 119.99915 * 240.00340 * 4 2 1 6 6 C 1.37878 * 119.99879 * 59.99715 * 4 2 1 7 7 N 1.31519 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99828 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47300 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47440 * 119.99922 * 8 6 4 11 11 H 1.48505 * 109.46879 * 240.00042 * 8 6 4 12 12 N 1.46896 * 109.47223 * 120.00220 * 2 1 3 13 13 C 1.46957 * 111.00125 * 299.99642 * 12 2 1 14 14 C 1.53053 * 109.36627 * 183.19102 * 13 12 2 15 15 N 1.46961 * 109.35965 * 301.60075 * 14 13 12 16 16 C 1.39615 * 110.99385 * 183.18933 * 15 14 13 17 17 C 1.34108 * 125.23539 * 179.97438 * 16 15 14 18 18 C 1.38579 * 114.71654 * 179.97438 * 17 16 15 19 19 C 1.33220 * 114.98773 * 359.97438 * 18 17 16 20 20 S 1.75856 * 109.74719 * 359.75926 * 19 18 17 21 21 C 1.46948 * 110.88251 * 59.32403 * 15 14 13 22 22 C 1.46955 * 111.00246 * 63.79910 * 12 2 1 23 23 H 1.08992 * 109.46619 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46568 * 299.99539 * 1 2 3 25 25 H 1.08992 * 109.47115 * 59.99431 * 1 2 3 26 26 H 0.96998 * 119.99564 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.48450 * 63.22460 * 13 12 2 28 28 H 1.08997 * 109.50712 * 303.17343 * 13 12 2 29 29 H 1.08997 * 109.48938 * 181.63663 * 14 13 12 30 30 H 1.08993 * 109.50714 * 61.57923 * 14 13 12 31 31 H 1.07995 * 122.63566 * 359.97438 * 17 16 15 32 32 H 1.07999 * 122.50603 * 179.97438 * 18 17 16 33 33 H 1.08008 * 125.13003 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.49243 * 60.64399 * 21 15 14 35 35 H 1.09003 * 109.49221 * 180.71229 * 21 15 14 36 36 H 1.08997 * 109.48942 * 296.77959 * 22 12 2 37 37 H 1.09002 * 109.48912 * 56.82196 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1465 -2.2868 -3.6040 10 1 1.1660 -1.5865 -4.8162 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 1.5486 -0.0262 2.4215 14 6 2.1438 -0.7286 3.6442 15 7 1.7482 -2.1439 3.6335 16 6 2.2136 -2.8020 4.7734 17 6 2.0152 -4.0984 5.0536 18 6 2.5753 -4.5256 6.2470 19 6 3.2245 -3.5856 6.9323 20 16 3.1578 -2.0608 6.0588 21 6 2.2194 -2.8102 2.4114 22 6 1.6242 -2.1078 1.1887 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7089 1.1615 -3.4844 27 1 0.4608 -0.0766 2.4668 28 1 1.8642 1.0171 2.4120 29 1 1.7726 -0.2542 4.5526 30 1 3.2307 -0.6546 3.6132 31 1 1.4624 -4.7575 4.4006 32 1 2.4917 -5.5445 6.5954 33 1 3.7204 -3.7379 7.8797 34 1 3.3072 -2.7599 2.3661 35 1 1.9034 -3.8534 2.4210 36 1 0.5372 -2.1819 1.2201 37 1 1.9950 -2.5822 0.2801 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152468976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:33 Heat of formation + Delta-G solvation = 52.793568 kcal Electronic energy + Delta-G solvation = -18329.365210 eV Core-core repulsion = 15619.589270 eV Total energy + Delta-G solvation = -2709.775940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51127 -37.47922 -35.45824 -32.65451 -30.69277 -29.75974 -27.75625 -25.50974 -25.09237 -23.39547 -22.93301 -20.83758 -19.00902 -18.96610 -17.75456 -16.26648 -15.75247 -15.16257 -14.72590 -14.44155 -14.29872 -14.16971 -13.78807 -13.15926 -12.67752 -12.62478 -12.53079 -12.22205 -11.74184 -11.58240 -11.19414 -11.05836 -10.91274 -10.82585 -10.65581 -10.52087 -10.32825 -9.99996 -9.77609 -9.58399 -8.87073 -8.45937 -8.43456 -7.70861 -7.23013 -6.05293 -4.09786 1.08887 1.55028 2.01641 2.80505 3.27419 3.35684 3.39303 3.82756 4.37466 4.85374 5.09418 5.13233 5.26841 5.31392 5.42635 5.52021 5.62627 5.65093 5.77895 5.91032 5.97658 6.12447 6.23778 6.32409 6.44074 6.54292 6.58261 6.77211 6.83615 6.94363 7.09053 7.10741 7.45956 7.68348 7.76724 8.03784 8.32383 8.52581 8.95717 9.55762 11.01765 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040267 B = 0.004444 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.188479 B = 6298.686624 C = 6640.390854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.533 5.533 13 C 0.055 3.945 14 C 0.049 3.951 15 N -0.451 5.451 16 C 0.039 3.961 17 C -0.194 4.194 18 C -0.106 4.106 19 C -0.243 4.243 20 S 0.066 5.934 21 C 0.060 3.940 22 C 0.062 3.938 23 H 0.029 0.971 24 H 0.010 0.990 25 H 0.088 0.912 26 H 0.260 0.740 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -6.842 15.309 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.258 5.258 13 C -0.074 4.074 14 C -0.078 4.078 15 N -0.168 5.168 16 C -0.177 4.177 17 C -0.227 4.227 18 C -0.137 4.137 19 C -0.379 4.379 20 S 0.325 5.675 21 C -0.066 4.066 22 C -0.067 4.067 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.176 0.824 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.959 -5.250 15.351 16.492 hybrid contribution -0.489 -1.792 -1.020 2.119 sum 2.470 -7.042 14.331 16.158 Atomic orbital electron populations 1.22389 1.00686 0.99363 1.00624 1.19303 0.89877 0.94650 0.85658 0.94074 1.21155 1.30802 1.12567 0.89724 0.91847 1.24925 0.95130 0.95072 0.99028 1.69897 1.36904 1.22973 1.23366 0.86477 0.78545 0.79668 0.82930 1.19743 1.21141 1.21035 1.62547 1.59246 1.01540 1.02447 1.22063 0.97981 0.97842 0.89541 1.22470 0.99594 0.85975 0.99803 1.59187 1.53831 1.03553 1.00186 1.23809 0.99614 0.96715 0.97562 1.19924 1.08138 0.94657 0.99943 1.19928 0.98931 1.00166 0.94627 1.25254 1.11006 0.95687 1.05915 1.84418 1.52006 1.14003 1.17100 1.22558 0.98845 0.97730 0.87509 1.22094 0.98100 0.90414 0.96085 0.95220 0.97122 0.89354 0.93007 0.94064 0.90475 0.90365 0.92605 0.84327 0.84623 0.82383 0.93025 0.90296 0.94432 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.27 37.16 0.31 -3.76 16 2 C 0.21 5.16 2.42 -68.86 -0.17 4.99 16 3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.50 -13.34 7.89 -34.44 -0.27 -13.61 16 5 H 0.06 1.67 6.41 -52.49 -0.34 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.53 -11.11 4.73 -227.87 -1.08 -12.18 16 13 C 0.05 0.98 5.13 -3.77 -0.02 0.96 16 14 C 0.05 0.77 4.67 -3.76 -0.02 0.75 16 15 N -0.45 -7.09 4.80 -172.12 -0.83 -7.91 16 16 C 0.04 0.55 6.03 -15.45 -0.09 0.46 16 17 C -0.19 -2.52 9.53 -40.91 -0.39 -2.91 16 18 C -0.11 -1.18 10.17 -41.21 -0.42 -1.60 16 19 C -0.24 -2.66 11.21 28.98 0.32 -2.33 16 20 S 0.07 0.82 21.48 -107.50 -2.31 -1.49 16 21 C 0.06 0.96 5.43 -3.77 -0.02 0.94 16 22 C 0.06 1.18 4.93 -3.77 -0.02 1.16 16 23 H 0.03 0.69 6.56 -51.93 -0.34 0.34 16 24 H 0.01 0.22 6.48 -51.93 -0.34 -0.12 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.04 0.77 6.48 -51.93 -0.34 0.44 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.10 7.67 -51.93 -0.40 0.70 16 30 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 31 H 0.14 1.69 7.63 -52.49 -0.40 1.29 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 36 H 0.04 0.75 6.57 -51.93 -0.34 0.41 16 37 H 0.10 1.95 6.14 -51.93 -0.32 1.63 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -27.61 298.31 -10.16 -37.76 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.17 Total: 1.20 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.88 Total: -13.44 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -1.28 Total: -44.40 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.31 Total: -1.49 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.61 -10.16 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.554 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds