Wall clock time and date at job start Mon Mar 30 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47142 * 2 1 4 4 C 1.50703 * 109.47057 * 240.00322 * 2 1 3 5 5 H 1.07996 * 119.99915 * 240.00340 * 4 2 1 6 6 C 1.37878 * 119.99879 * 59.99715 * 4 2 1 7 7 N 1.31519 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99828 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47300 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47440 * 119.99922 * 8 6 4 11 11 H 1.48505 * 109.46879 * 240.00042 * 8 6 4 12 12 N 1.46896 * 109.47223 * 120.00220 * 2 1 3 13 13 C 1.46957 * 111.00125 * 299.99642 * 12 2 1 14 14 C 1.53053 * 109.36627 * 183.19102 * 13 12 2 15 15 N 1.46961 * 109.35965 * 301.60075 * 14 13 12 16 16 C 1.39615 * 110.99385 * 183.18933 * 15 14 13 17 17 C 1.34108 * 125.23539 * 179.97438 * 16 15 14 18 18 C 1.38579 * 114.71654 * 179.97438 * 17 16 15 19 19 C 1.33220 * 114.98773 * 359.97438 * 18 17 16 20 20 S 1.75856 * 109.74719 * 359.75926 * 19 18 17 21 21 C 1.46948 * 110.88251 * 59.32403 * 15 14 13 22 22 C 1.46955 * 111.00246 * 63.79910 * 12 2 1 23 23 H 1.08992 * 109.46619 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46568 * 299.99539 * 1 2 3 25 25 H 1.08992 * 109.47115 * 59.99431 * 1 2 3 26 26 H 0.96998 * 119.99564 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.48450 * 63.22460 * 13 12 2 28 28 H 1.08997 * 109.50712 * 303.17343 * 13 12 2 29 29 H 1.08997 * 109.48938 * 181.63663 * 14 13 12 30 30 H 1.08993 * 109.50714 * 61.57923 * 14 13 12 31 31 H 1.07995 * 122.63566 * 359.97438 * 17 16 15 32 32 H 1.07999 * 122.50603 * 179.97438 * 18 17 16 33 33 H 1.08008 * 125.13003 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.49243 * 60.64399 * 21 15 14 35 35 H 1.09003 * 109.49221 * 180.71229 * 21 15 14 36 36 H 1.08997 * 109.48942 * 296.77959 * 22 12 2 37 37 H 1.09002 * 109.48912 * 56.82196 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1465 -2.2868 -3.6040 10 1 1.1660 -1.5865 -4.8162 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 1.5486 -0.0262 2.4215 14 6 2.1438 -0.7286 3.6442 15 7 1.7482 -2.1439 3.6335 16 6 2.2136 -2.8020 4.7734 17 6 2.0152 -4.0984 5.0536 18 6 2.5753 -4.5256 6.2470 19 6 3.2245 -3.5856 6.9323 20 16 3.1578 -2.0608 6.0588 21 6 2.2194 -2.8102 2.4114 22 6 1.6242 -2.1078 1.1887 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7089 1.1615 -3.4844 27 1 0.4608 -0.0766 2.4668 28 1 1.8642 1.0171 2.4120 29 1 1.7726 -0.2542 4.5526 30 1 3.2307 -0.6546 3.6132 31 1 1.4624 -4.7575 4.4006 32 1 2.4917 -5.5445 6.5954 33 1 3.7204 -3.7379 7.8797 34 1 3.3072 -2.7599 2.3661 35 1 1.9034 -3.8534 2.4210 36 1 0.5372 -2.1819 1.2201 37 1 1.9950 -2.5822 0.2801 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152468976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:33 Heat of formation + Delta-G solvation = 35.634644 kcal Electronic energy + Delta-G solvation = -18330.109277 eV Core-core repulsion = 15619.589270 eV Total energy + Delta-G solvation = -2710.520007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82722 -38.69900 -36.85317 -34.53415 -32.08274 -31.37019 -29.04254 -27.41687 -26.57479 -24.78956 -24.04018 -22.49991 -20.51493 -19.98609 -18.86261 -18.22332 -17.09581 -16.63031 -16.03101 -15.97509 -15.65102 -15.52815 -15.30893 -14.58644 -14.41774 -13.85590 -13.61323 -13.45740 -13.24665 -13.03937 -12.87729 -12.67601 -12.61610 -12.38760 -12.22015 -12.05688 -11.91324 -11.65423 -11.46369 -10.88376 -10.66882 -10.50331 -9.39390 -8.93580 -8.76199 -8.11316 -6.22330 0.13674 0.58528 1.11346 1.42048 1.44471 1.55424 1.88721 2.42885 2.67464 3.18332 3.27884 3.81937 4.03837 4.13011 4.28446 4.33300 4.36414 4.51122 4.60448 4.65319 4.70277 4.76548 4.88610 4.91021 4.97067 5.06679 5.11563 5.18003 5.35178 5.48564 5.57051 5.69434 5.76374 5.79535 5.99276 6.14810 6.43051 6.68318 6.90791 7.47119 8.95272 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040267 B = 0.004444 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.188479 B = 6298.686624 C = 6640.390854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.541 5.541 13 C 0.056 3.944 14 C 0.060 3.940 15 N -0.460 5.460 16 C 0.004 3.996 17 C -0.188 4.188 18 C -0.115 4.115 19 C -0.229 4.229 20 S 0.060 5.940 21 C 0.072 3.928 22 C 0.067 3.933 23 H 0.028 0.972 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.144 0.856 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.027 0.973 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -8.555 16.982 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.027 0.973 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.265 5.265 13 C -0.073 4.073 14 C -0.067 4.067 15 N -0.177 5.177 16 C -0.210 4.210 17 C -0.221 4.221 18 C -0.145 4.145 19 C -0.365 4.365 20 S 0.320 5.680 21 C -0.055 4.055 22 C -0.061 4.061 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.182 0.818 33 H 0.204 0.796 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.045 0.955 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.612 -6.974 17.055 18.776 hybrid contribution -0.662 -1.293 -1.411 2.025 sum 2.950 -8.267 15.644 17.938 Atomic orbital electron populations 1.22174 1.00305 0.98991 1.00019 1.19054 0.90015 0.93150 0.86948 0.97285 1.21420 1.30697 1.12536 0.90781 0.92133 1.25680 0.95333 0.95744 1.01836 1.70023 1.37860 1.24182 1.23955 0.85496 0.78031 0.78674 0.79357 1.19052 1.20773 1.20872 1.62435 1.59451 1.02404 1.02235 1.22095 0.97631 0.98187 0.89373 1.22330 0.99170 0.86300 0.98932 1.59176 1.54718 1.03334 1.00487 1.23837 1.01834 0.97558 0.97813 1.20224 1.07121 0.94231 1.00487 1.20206 0.98726 1.01642 0.93955 1.25675 1.09928 0.94429 1.06449 1.84433 1.51791 1.15142 1.16674 1.22381 0.98120 0.98288 0.86692 1.22007 0.97490 0.89459 0.97176 0.95315 0.95545 0.91990 0.92995 0.94803 0.90343 0.88654 0.92930 0.83834 0.81839 0.79571 0.93653 0.88365 0.95483 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.57 8.27 71.98 0.60 -6.97 16 2 C 0.22 10.82 2.42 44.17 0.11 10.93 16 3 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 4 C -0.52 -27.84 7.89 25.60 0.20 -27.63 16 5 H 0.06 3.24 6.41 -2.91 -0.02 3.22 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -52.49 11.32 21.45 0.24 -52.24 16 8 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.54 -22.87 4.73 -874.86 -4.14 -27.01 16 13 C 0.06 2.01 5.13 86.31 0.44 2.45 16 14 C 0.06 1.83 4.67 86.31 0.40 2.23 16 15 N -0.46 -13.91 4.80 -698.46 -3.35 -17.26 16 16 C 0.00 0.11 6.03 82.51 0.50 0.61 16 17 C -0.19 -4.39 9.53 21.41 0.20 -4.18 16 18 C -0.12 -2.17 10.17 21.22 0.22 -1.95 16 19 C -0.23 -4.19 11.21 66.69 0.75 -3.44 16 20 S 0.06 1.37 21.48 -56.49 -1.21 0.15 16 21 C 0.07 2.24 5.43 86.31 0.47 2.71 16 22 C 0.07 2.59 4.93 86.31 0.43 3.01 16 23 H 0.03 1.35 6.56 -2.39 -0.02 1.33 16 24 H 0.03 1.15 6.48 -2.39 -0.02 1.13 16 25 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 26 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.03 1.27 6.48 -2.39 -0.02 1.25 16 28 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.10 2.54 7.67 -2.39 -0.02 2.52 16 30 H 0.05 1.62 7.95 -2.39 -0.02 1.60 16 31 H 0.14 3.13 7.63 -2.91 -0.02 3.11 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.10 2.66 7.31 -2.39 -0.02 2.64 16 36 H 0.03 1.09 6.57 -2.39 -0.02 1.07 16 37 H 0.08 3.27 6.14 -2.39 -0.01 3.25 16 Total: -1.00 -59.26 298.31 -0.62 -59.87 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.06 Total: 12.38 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.76 Total: -21.10 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -7.25 Total: -96.51 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.21 Total: 0.15 kcal Total: -59.26 -0.62 -59.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.509 kcal (2) G-P(sol) polarization free energy of solvation -59.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds