Wall clock time and date at job start Mon Mar 30 2020 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46746 * 2 1 4 4 C 1.50697 * 109.47136 * 120.00240 * 2 1 3 5 5 H 1.08004 * 119.99601 * 119.99679 * 4 2 1 6 6 C 1.37874 * 120.00424 * 300.00224 * 4 2 1 7 7 N 1.31516 * 119.99636 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00227 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47177 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46995 * 119.99801 * 8 6 4 11 11 H 1.48493 * 109.47177 * 239.99816 * 8 6 4 12 12 N 1.46898 * 109.46707 * 240.00738 * 2 1 3 13 13 C 1.46850 * 110.99813 * 183.95475 * 12 2 1 14 14 C 1.53033 * 109.52490 * 174.15761 * 13 12 2 15 15 C 1.53119 * 109.27787 * 59.17980 * 14 13 12 16 16 C 1.53126 * 109.16048 * 302.34386 * 15 14 13 17 17 H 1.09006 * 109.50177 * 297.71578 * 16 15 14 18 18 C 1.50701 * 109.50316 * 177.59710 * 16 15 14 19 19 N 1.29023 * 124.91568 * 120.00574 * 18 16 15 20 20 C 1.31779 * 117.12719 * 179.97438 * 19 18 16 21 21 C 1.33647 * 114.49545 * 359.97438 * 20 19 18 22 22 S 1.70968 * 124.91497 * 299.69649 * 18 16 15 23 23 C 1.46845 * 111.00565 * 59.74410 * 12 2 1 24 24 H 1.09003 * 109.46734 * 299.99299 * 1 2 3 25 25 H 1.08999 * 109.47467 * 59.99556 * 1 2 3 26 26 H 1.08995 * 109.47370 * 179.97438 * 1 2 3 27 27 H 0.97006 * 119.99875 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.46186 * 54.13967 * 13 12 2 29 29 H 1.08998 * 109.46012 * 294.17361 * 13 12 2 30 30 H 1.09004 * 109.50318 * 299.23790 * 14 13 12 31 31 H 1.08999 * 109.53400 * 179.13825 * 14 13 12 32 32 H 1.08999 * 109.52185 * 182.44278 * 15 14 13 33 33 H 1.08993 * 109.52436 * 62.24928 * 15 14 13 34 34 H 1.08000 * 122.75304 * 179.97438 * 20 19 18 35 35 H 1.08004 * 126.03276 * 180.02562 * 21 20 19 36 36 H 1.08995 * 109.46315 * 65.81881 * 23 12 2 37 37 H 1.09005 * 109.45975 * 305.85394 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1466 -2.2873 3.6035 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0196 -0.6923 -1.1995 13 6 3.4845 -0.7944 -1.1872 14 6 3.9480 -1.6446 -2.3722 15 6 3.4739 -0.9960 -3.6758 16 6 1.9493 -0.8573 -3.6426 17 1 1.4952 -1.8462 -3.5795 18 6 1.4795 -0.1661 -4.8966 19 7 0.6660 -0.6744 -5.7595 20 6 0.3571 0.0676 -6.8038 21 6 0.9424 1.2689 -6.8226 22 16 1.9417 1.4079 -5.3782 23 6 1.5438 -0.0299 -2.4207 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7095 1.1616 3.4845 28 1 3.8082 -1.2610 -0.2568 29 1 3.9186 0.2025 -1.2636 30 1 3.5253 -2.6459 -2.2892 31 1 5.0361 -1.7077 -2.3720 32 1 3.7644 -1.6210 -4.5202 33 1 3.9272 -0.0101 -3.7780 34 1 -0.3140 -0.2676 -7.5808 35 1 0.8210 2.0228 -7.5864 36 1 1.9870 0.9633 -2.4913 37 1 0.4579 0.0587 -2.3862 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156987568.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:21 Heat of formation + Delta-G solvation = 24.953298 kcal Electronic energy + Delta-G solvation = -18333.448212 eV Core-core repulsion = 15622.465027 eV Total energy + Delta-G solvation = -2710.983185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87783 -39.77385 -36.30253 -33.99881 -32.93774 -30.37456 -30.15923 -27.47810 -26.01715 -25.12093 -23.43778 -21.81219 -21.20075 -20.39258 -18.87749 -18.23763 -17.27888 -16.52205 -16.12498 -15.77905 -15.51542 -15.36662 -14.98939 -14.52560 -14.41631 -14.10997 -13.91827 -13.43445 -13.39542 -12.88451 -12.53181 -12.46064 -12.29783 -12.25247 -12.13092 -12.05182 -11.68013 -11.60743 -11.15275 -10.80458 -10.60948 -10.49468 -10.34730 -9.80347 -8.94668 -8.10399 -6.21966 -0.24678 0.43091 0.85110 1.42799 1.44988 1.56555 1.88464 2.43327 2.95344 3.18688 3.50088 3.82568 3.86308 4.06461 4.30500 4.37546 4.37777 4.44189 4.57348 4.60867 4.75151 4.79514 4.80799 4.96214 4.99564 5.05904 5.11373 5.20690 5.23650 5.32233 5.42691 5.53585 5.73629 5.78872 6.25417 6.41225 6.72365 6.80394 6.92931 7.47281 8.96202 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.004818 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.906609 B = 5810.582784 C = 6197.864018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.218 3.782 3 H -0.037 1.037 4 C -0.515 4.515 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.537 5.537 13 C 0.059 3.941 14 C -0.105 4.105 15 C -0.103 4.103 16 C -0.004 4.004 17 H 0.094 0.906 18 C 0.047 3.953 19 N -0.503 5.503 20 C 0.019 3.981 21 C -0.253 4.253 22 S 0.128 5.872 23 C 0.068 3.932 24 H 0.061 0.939 25 H 0.024 0.976 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.070 0.930 29 H 0.013 0.987 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.200 0.800 35 H 0.210 0.790 36 H 0.021 0.979 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 0.307 -17.604 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.020 1.020 4 C -0.554 4.554 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.261 5.261 13 C -0.069 4.069 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.026 4.026 17 H 0.112 0.888 18 C -0.230 4.230 19 N -0.218 5.218 20 C -0.131 4.131 21 C -0.392 4.392 22 S 0.381 5.619 23 C -0.061 4.061 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.216 0.784 35 H 0.227 0.773 36 H 0.039 0.961 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.982 0.181 -16.963 17.425 hybrid contribution -0.445 0.447 0.436 0.767 sum 3.537 0.628 -16.527 16.913 Atomic orbital electron populations 1.21677 0.97626 0.99199 0.99496 1.19020 0.92397 0.90233 0.87224 1.01974 1.21443 1.30994 1.12268 0.90676 0.91870 1.25723 0.95361 0.95745 1.01959 1.70036 1.37907 1.24297 1.23969 0.85459 0.78069 0.78651 0.79171 1.18913 1.20746 1.20817 1.61940 1.10434 1.52337 1.01420 1.22047 0.87399 0.97837 0.99626 1.21566 1.01262 0.99166 0.92326 1.21660 0.91863 1.01743 0.98884 1.19772 0.97489 0.98939 0.86410 0.88761 1.27041 0.98991 0.96557 1.00446 1.66309 1.14422 1.37106 1.03962 1.22252 1.02573 0.91065 0.97176 1.27510 1.04712 1.03561 1.03405 1.84060 1.44962 1.15897 1.16933 1.22047 0.99927 0.94287 0.89864 0.92031 0.95671 0.95000 0.92984 0.91196 0.96825 0.91235 0.89084 0.89814 0.91578 0.78356 0.77340 0.96058 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.16 8.74 71.98 0.63 -5.54 16 2 C 0.22 11.26 2.06 44.17 0.09 11.35 16 3 H -0.04 -2.14 8.14 -2.39 -0.02 -2.16 16 4 C -0.52 -28.28 7.86 25.60 0.20 -28.08 16 5 H 0.06 3.42 6.42 -2.91 -0.02 3.40 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 8 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.54 -23.08 4.52 -875.52 -3.96 -27.03 16 13 C 0.06 2.24 5.21 86.32 0.45 2.69 16 14 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 15 C -0.10 -2.68 5.21 30.68 0.16 -2.52 16 16 C 0.00 -0.12 2.78 -11.49 -0.03 -0.15 16 17 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 18 C 0.05 1.35 6.04 88.52 0.53 1.88 16 19 N -0.50 -14.52 10.54 -191.45 -2.02 -16.54 16 20 C 0.02 0.42 11.35 83.66 0.95 1.37 16 21 C -0.25 -4.68 11.37 66.78 0.76 -3.92 16 22 S 0.13 2.97 22.45 -56.49 -1.27 1.70 16 23 C 0.07 2.54 4.40 86.33 0.38 2.92 16 24 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 25 H 0.02 1.13 6.28 -2.39 -0.01 1.12 16 26 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 28 H 0.07 2.91 6.04 -2.38 -0.01 2.90 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.65 7.87 -2.39 -0.02 1.63 16 34 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.02 0.80 7.89 -2.39 -0.02 0.78 16 37 H 0.06 2.47 6.00 -2.38 -0.01 2.46 16 Total: -1.00 -63.21 304.07 0.84 -62.38 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.05 Total: 8.75 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.76 Total: -21.75 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -5.73 Total: -96.68 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.27 Total: 1.70 kcal Total: -63.21 0.84 -62.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156987568.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.329 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds