Wall clock time and date at job start Mon Mar 30 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 103.00190 * 2 1 4 4 H 1.09001 * 109.46983 * 305.00237 * 3 2 1 5 5 C 1.53005 * 109.46800 * 65.00019 * 3 2 1 6 6 C 1.52994 * 109.47208 * 184.99868 * 3 2 1 7 7 N 1.46509 * 109.47171 * 60.00121 * 6 3 2 8 8 C 1.39845 * 120.00101 * 180.02562 * 7 6 3 9 9 C 1.39601 * 119.84293 * 359.72110 * 8 7 6 10 10 C 1.38053 * 120.54934 * 179.76267 * 9 8 7 11 11 C 1.38736 * 120.22433 * 0.51747 * 10 9 8 12 12 N 1.38861 * 120.16583 * 179.72034 * 11 10 9 13 13 C 1.41566 * 119.66944 * 359.74697 * 11 10 9 14 14 C 1.41023 * 120.26548 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99998 * 25.57047 * 14 13 11 16 16 C 1.39892 * 120.00172 * 205.57116 * 14 13 11 17 17 N 1.30899 * 119.99324 * 15.34183 * 16 14 13 18 18 Si 1.86791 * 120.00158 * 195.34676 * 16 14 13 19 19 H 1.48508 * 109.47278 * 89.99877 * 18 16 14 20 20 H 1.48500 * 109.47030 * 209.99764 * 18 16 14 21 21 H 1.48499 * 109.47583 * 330.00115 * 18 16 14 22 22 C 1.38009 * 119.83727 * 180.02562 * 8 7 6 23 23 H 1.09007 * 109.47015 * 299.99919 * 1 2 3 24 24 H 1.09006 * 109.47229 * 59.99700 * 1 2 3 25 25 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47174 * 60.00335 * 5 3 2 27 27 H 1.08994 * 109.46787 * 179.97438 * 5 3 2 28 28 H 1.08991 * 109.47301 * 300.00225 * 5 3 2 29 29 H 1.08994 * 109.47353 * 180.02562 * 6 3 2 30 30 H 1.08998 * 109.47639 * 300.00582 * 6 3 2 31 31 H 0.97000 * 119.99698 * 0.02562 * 7 6 3 32 32 H 1.08000 * 119.72054 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.88687 * 180.25975 * 10 9 8 34 34 H 0.96996 * 119.99725 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99838 * 0.02562 * 12 11 10 36 36 H 0.97010 * 119.99333 * 179.97438 * 17 16 14 37 37 H 1.07998 * 120.11844 * 359.94725 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7370 1.9412 -0.1257 7 7 4.1959 1.3340 -1.3776 8 6 5.5528 1.3670 -1.7144 9 6 6.4663 1.9844 -0.8582 10 6 7.8098 2.0212 -1.1740 11 6 8.2655 1.4523 -2.3545 12 7 9.6163 1.4951 -2.6737 13 6 7.3465 0.8286 -3.2323 14 6 7.7960 0.2469 -4.4358 15 1 8.8153 -0.0999 -4.5203 16 6 6.9215 0.1189 -5.5202 17 7 5.7992 0.7925 -5.5388 18 14 7.3553 -1.0130 -6.9413 19 1 6.8233 -2.3730 -6.6712 20 1 6.7559 -0.4868 -8.1939 21 1 8.8315 -1.0793 -7.0887 22 6 5.9814 0.7945 -2.8948 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 2.2355 1.9149 2.1492 27 1 1.9884 3.4634 1.3076 28 1 0.6637 2.2778 1.3970 29 1 3.9823 3.0031 -0.1252 30 1 4.2296 1.4545 0.7160 31 1 3.5586 0.9092 -1.9727 32 1 6.1197 2.4334 0.0608 33 1 8.5078 2.4980 -0.5018 34 1 9.9322 1.0969 -3.4998 35 1 10.2438 1.9231 -2.0705 36 1 5.1930 0.7040 -6.2909 37 1 5.2712 0.3213 -3.5567 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166387235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:42 Heat of formation + Delta-G solvation = 14.939696 kcal Electronic energy + Delta-G solvation = -17666.946575 eV Core-core repulsion = 14955.529168 eV Total energy + Delta-G solvation = -2711.417407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -37.95345 -36.05877 -33.56210 -33.37395 -31.08651 -29.35032 -28.92048 -27.06422 -24.93199 -24.27118 -22.06374 -20.72487 -19.61090 -17.02846 -16.55124 -16.04633 -15.42788 -15.09274 -14.93103 -14.61630 -14.46825 -13.71636 -13.50171 -13.00592 -12.84550 -12.54612 -12.46275 -12.17183 -11.83172 -11.75102 -11.49231 -11.26994 -11.01107 -10.99028 -10.97250 -10.32218 -9.88893 -9.81078 -9.58387 -9.27676 -9.01507 -7.74388 -7.58448 -7.16609 -6.55868 -5.47826 -4.01826 1.68954 2.60630 2.95423 3.16946 3.19371 3.36011 3.54013 4.07452 4.36167 4.78277 4.86905 5.02049 5.03762 5.08103 5.24693 5.47283 5.50024 5.57774 5.66599 5.89925 5.94757 6.02943 6.16472 6.41084 6.67386 7.16831 7.20091 7.37529 7.54932 7.74851 7.93274 8.06688 8.17930 8.50977 8.81003 8.96022 8.99727 9.05762 9.31006 9.39341 10.42555 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.005226 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.151752 B = 5356.264722 C = 6530.116405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.237 6.237 3 C -0.070 4.070 4 H 0.089 0.911 5 C -0.144 4.144 6 C 0.160 3.840 7 N -0.759 5.759 8 C 0.178 3.822 9 C -0.256 4.256 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.094 3.906 14 C -0.463 4.463 15 H 0.071 0.929 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.199 4.199 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.393 0.607 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.388 0.612 35 H 0.374 0.626 36 H 0.274 0.726 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 1.329 8.204 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S -0.012 6.012 3 C -0.199 4.199 4 H 0.107 0.893 5 C -0.203 4.203 6 C 0.033 3.967 7 N -0.396 5.396 8 C 0.080 3.920 9 C -0.280 4.280 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.089 3.911 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.428 5.428 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.190 1.190 22 C -0.223 4.223 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.216 0.784 35 H 0.198 0.802 36 H 0.085 0.915 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.918 0.585 8.211 11.422 hybrid contribution -0.685 0.488 -1.004 1.310 sum -8.603 1.073 7.207 11.274 Atomic orbital electron populations 1.23421 0.95883 1.06137 1.04504 1.87339 1.05290 1.10837 1.97723 1.23464 1.00766 0.94206 1.01470 0.89261 1.22012 1.00985 1.01162 0.96150 1.20769 0.88647 0.97947 0.89301 1.44347 1.06093 1.66847 1.22287 1.17505 0.82204 0.97839 0.94468 1.19594 0.92689 1.14451 1.01304 1.19685 0.94734 1.06525 0.96771 1.17858 0.84702 1.02788 0.96319 1.41803 1.05312 1.69639 1.26439 1.16974 0.90531 0.91824 0.91746 1.19140 0.97879 1.36111 0.96337 0.91136 1.25742 0.94547 0.94408 0.99272 1.69883 1.09657 1.32964 1.30253 0.86420 0.79588 0.81037 0.80159 1.19613 1.20666 1.18999 1.20532 0.96571 1.09076 0.96143 0.90847 0.90739 0.88382 0.91143 0.91452 0.92533 0.92209 0.92722 0.77305 0.89858 0.89852 0.78364 0.80155 0.91517 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 10.45 101.05 1.06 -0.20 16 2 S -0.24 -3.24 20.99 -107.50 -2.26 -5.50 16 3 C -0.07 -0.89 2.93 -26.73 -0.08 -0.97 16 4 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 5 C -0.14 -1.42 9.10 37.16 0.34 -1.08 16 6 C 0.16 2.55 4.35 -4.04 -0.02 2.54 16 7 N -0.76 -15.10 5.45 -58.64 -0.32 -15.42 16 8 C 0.18 4.27 6.64 -83.78 -0.56 3.71 16 9 C -0.26 -5.96 9.31 -39.14 -0.36 -6.32 16 10 C -0.15 -3.58 9.86 -39.47 -0.39 -3.97 16 11 C 0.08 2.08 6.79 -83.23 -0.56 1.52 16 12 N -0.89 -18.62 8.98 32.75 0.29 -18.32 16 13 C 0.09 2.56 5.58 -106.66 -0.60 1.96 16 14 C -0.46 -12.40 8.50 -37.91 -0.32 -12.72 16 15 H 0.07 1.80 6.67 -52.49 -0.35 1.45 16 16 C 0.08 1.95 5.18 -17.33 -0.09 1.86 16 17 N -0.80 -21.28 10.88 55.55 0.60 -20.68 16 18 Si 0.90 19.30 29.59 -169.99 -5.03 14.27 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 23 H 0.07 0.60 7.14 -51.92 -0.37 0.23 16 24 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 29 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 30 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 31 H 0.39 7.75 7.98 -40.82 -0.33 7.43 16 32 H 0.08 1.75 6.69 -52.49 -0.35 1.40 16 33 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.39 7.98 7.04 -40.82 -0.29 7.69 16 35 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 36 H 0.27 6.71 8.30 -40.82 -0.34 6.38 16 37 H 0.12 3.32 6.14 -52.49 -0.32 3.00 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -29.04 314.76 -9.10 -38.14 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -5.22 Total: 22.07 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.91 Total: -19.29 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.58 Total: -54.42 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.26 Total: -5.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.04 -9.10 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166387235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.078 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds