Wall clock time and date at job start Mon Mar 30 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 103.00190 * 2 1 4 4 H 1.09001 * 109.46983 * 305.00237 * 3 2 1 5 5 C 1.53005 * 109.46800 * 65.00019 * 3 2 1 6 6 C 1.52994 * 109.47208 * 184.99868 * 3 2 1 7 7 N 1.46509 * 109.47171 * 60.00121 * 6 3 2 8 8 C 1.39845 * 120.00101 * 180.02562 * 7 6 3 9 9 C 1.39601 * 119.84293 * 359.72110 * 8 7 6 10 10 C 1.38053 * 120.54934 * 179.76267 * 9 8 7 11 11 C 1.38736 * 120.22433 * 0.51747 * 10 9 8 12 12 N 1.38861 * 120.16583 * 179.72034 * 11 10 9 13 13 C 1.41566 * 119.66944 * 359.74697 * 11 10 9 14 14 C 1.41023 * 120.26548 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99998 * 25.57047 * 14 13 11 16 16 C 1.39892 * 120.00172 * 205.57116 * 14 13 11 17 17 N 1.30899 * 119.99324 * 15.34183 * 16 14 13 18 18 Si 1.86791 * 120.00158 * 195.34676 * 16 14 13 19 19 H 1.48508 * 109.47278 * 89.99877 * 18 16 14 20 20 H 1.48500 * 109.47030 * 209.99764 * 18 16 14 21 21 H 1.48499 * 109.47583 * 330.00115 * 18 16 14 22 22 C 1.38009 * 119.83727 * 180.02562 * 8 7 6 23 23 H 1.09007 * 109.47015 * 299.99919 * 1 2 3 24 24 H 1.09006 * 109.47229 * 59.99700 * 1 2 3 25 25 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47174 * 60.00335 * 5 3 2 27 27 H 1.08994 * 109.46787 * 179.97438 * 5 3 2 28 28 H 1.08991 * 109.47301 * 300.00225 * 5 3 2 29 29 H 1.08994 * 109.47353 * 180.02562 * 6 3 2 30 30 H 1.08998 * 109.47639 * 300.00582 * 6 3 2 31 31 H 0.97000 * 119.99698 * 0.02562 * 7 6 3 32 32 H 1.08000 * 119.72054 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.88687 * 180.25975 * 10 9 8 34 34 H 0.96996 * 119.99725 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99838 * 0.02562 * 12 11 10 36 36 H 0.97010 * 119.99333 * 179.97438 * 17 16 14 37 37 H 1.07998 * 120.11844 * 359.94725 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7370 1.9412 -0.1257 7 7 4.1959 1.3340 -1.3776 8 6 5.5528 1.3670 -1.7144 9 6 6.4663 1.9844 -0.8582 10 6 7.8098 2.0212 -1.1740 11 6 8.2655 1.4523 -2.3545 12 7 9.6163 1.4951 -2.6737 13 6 7.3465 0.8286 -3.2323 14 6 7.7960 0.2469 -4.4358 15 1 8.8153 -0.0999 -4.5203 16 6 6.9215 0.1189 -5.5202 17 7 5.7992 0.7925 -5.5388 18 14 7.3553 -1.0130 -6.9413 19 1 6.8233 -2.3730 -6.6712 20 1 6.7559 -0.4868 -8.1939 21 1 8.8315 -1.0793 -7.0887 22 6 5.9814 0.7945 -2.8948 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 2.2355 1.9149 2.1492 27 1 1.9884 3.4634 1.3076 28 1 0.6637 2.2778 1.3970 29 1 3.9823 3.0031 -0.1252 30 1 4.2296 1.4545 0.7160 31 1 3.5586 0.9092 -1.9727 32 1 6.1197 2.4334 0.0608 33 1 8.5078 2.4980 -0.5018 34 1 9.9322 1.0969 -3.4998 35 1 10.2438 1.9231 -2.0705 36 1 5.1930 0.7040 -6.2909 37 1 5.2712 0.3213 -3.5567 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166387235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:42 Heat of formation + Delta-G solvation = -2.746631 kcal Electronic energy + Delta-G solvation = -17667.713512 eV Core-core repulsion = 14955.529168 eV Total energy + Delta-G solvation = -2712.184344 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75101 -37.53662 -35.34369 -34.92664 -32.59010 -31.27558 -29.79522 -28.58757 -26.74680 -25.74505 -23.47108 -22.33413 -21.43150 -18.90401 -17.95663 -17.43903 -17.22619 -16.66526 -16.47997 -16.15246 -15.73079 -14.76598 -14.52256 -14.48383 -14.21426 -14.09011 -13.68161 -13.54474 -13.43285 -13.23781 -13.05409 -12.80454 -12.68812 -12.46952 -12.09791 -12.05919 -11.67093 -11.42250 -11.15914 -10.92921 -10.70267 -9.39604 -9.12187 -8.66991 -8.47627 -7.27821 -5.99000 0.72704 1.13917 1.41618 1.52871 1.53250 1.66872 1.70224 2.28252 2.91277 2.97213 3.69815 3.79394 3.97128 4.01118 4.22616 4.33275 4.36527 4.61737 4.66408 4.70869 4.74113 4.86735 4.89031 4.98186 5.22144 5.25268 5.36512 5.45061 5.68614 5.90334 6.08248 6.19202 6.29649 6.58461 6.98646 7.07769 7.15400 7.26662 7.49102 7.68777 8.52742 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.005226 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.151752 B = 5356.264722 C = 6530.116405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.309 6.309 3 C -0.053 4.053 4 H 0.091 0.909 5 C -0.137 4.137 6 C 0.158 3.842 7 N -0.756 5.756 8 C 0.174 3.826 9 C -0.259 4.259 10 C -0.157 4.157 11 C 0.069 3.931 12 N -0.879 5.879 13 C 0.060 3.940 14 C -0.492 4.492 15 H 0.074 0.926 16 C 0.032 3.968 17 N -0.833 5.833 18 Si 0.975 3.025 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.226 4.226 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.390 0.610 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.390 0.610 35 H 0.390 0.610 36 H 0.278 0.722 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 1.828 9.058 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.084 6.084 3 C -0.182 4.182 4 H 0.109 0.891 5 C -0.196 4.196 6 C 0.033 3.967 7 N -0.391 5.391 8 C 0.073 3.927 9 C -0.283 4.283 10 C -0.182 4.182 11 C -0.033 4.033 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.523 4.523 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.461 5.461 18 Si 0.797 3.203 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.251 4.251 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.224 0.776 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.218 0.782 35 H 0.218 0.782 36 H 0.089 0.911 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.525 1.104 9.100 12.518 hybrid contribution -0.561 0.372 -1.163 1.344 sum -9.086 1.477 7.936 12.154 Atomic orbital electron populations 1.23442 0.91543 1.07207 1.05805 1.87573 1.10196 1.12725 1.97923 1.23352 0.98272 0.93237 1.03300 0.89071 1.21986 1.02047 1.01507 0.94102 1.20931 0.91028 0.97699 0.87079 1.44439 1.04617 1.66558 1.23496 1.17629 0.84161 0.97105 0.93779 1.19917 0.92685 1.13847 1.01854 1.20046 0.95453 1.05977 0.96694 1.18030 0.85893 1.02843 0.96558 1.41672 1.04324 1.69482 1.26829 1.17366 0.91392 0.92953 0.92807 1.19407 0.98499 1.37373 0.97058 0.90787 1.26573 0.94273 0.95409 1.01771 1.69972 1.10678 1.34176 1.31281 0.85310 0.79633 0.78540 0.76771 1.19529 1.19921 1.18098 1.20492 0.96499 1.10810 0.97264 0.88855 0.90037 0.87452 0.91294 0.90128 0.90688 0.91555 0.93265 0.77586 0.87453 0.87052 0.78243 0.78200 0.91134 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.45 113.37 1.19 -0.71 16 2 S -0.31 -8.23 20.99 -56.49 -1.19 -9.42 16 3 C -0.05 -1.26 2.93 30.59 0.09 -1.17 16 4 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 5 C -0.14 -2.34 9.10 71.98 0.66 -1.68 16 6 C 0.16 4.89 4.35 86.38 0.38 5.27 16 7 N -0.76 -30.34 5.45 -339.43 -1.85 -32.19 16 8 C 0.17 8.43 6.64 38.14 0.25 8.68 16 9 C -0.26 -11.83 9.31 22.55 0.21 -11.62 16 10 C -0.16 -7.21 9.86 22.34 0.22 -6.99 16 11 C 0.07 3.41 6.79 38.97 0.26 3.67 16 12 N -0.88 -36.25 8.98 -50.31 -0.45 -36.70 16 13 C 0.06 3.34 5.58 -21.18 -0.12 3.22 16 14 C -0.49 -26.98 8.50 23.35 0.20 -26.78 16 15 H 0.07 3.84 6.67 -2.91 -0.02 3.82 16 16 C 0.03 1.69 5.18 85.23 0.44 2.13 16 17 N -0.83 -45.68 10.88 21.82 0.24 -45.45 16 18 Si 0.98 40.13 29.59 68.60 2.03 42.15 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 C -0.23 -12.48 8.50 22.81 0.19 -12.29 16 23 H 0.09 1.23 7.14 -2.39 -0.02 1.21 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.02 6.92 -2.39 -0.02 1.01 16 29 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 30 H 0.05 1.59 7.95 -2.39 -0.02 1.57 16 31 H 0.39 15.85 7.98 -92.71 -0.74 15.11 16 32 H 0.11 4.30 6.69 -2.91 -0.02 4.28 16 33 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.39 15.92 7.04 -92.71 -0.65 15.27 16 35 H 0.39 13.25 8.83 -92.71 -0.82 12.43 16 36 H 0.28 14.02 8.30 -92.70 -0.77 13.25 16 37 H 0.10 5.69 6.14 -2.91 -0.02 5.67 16 Total: -1.00 -64.04 314.76 1.64 -62.40 By element: Atomic # 1 Polarization: 58.59 SS G_CDS: -1.11 Total: 57.48 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.97 Total: -38.27 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -2.06 Total: -114.34 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.19 Total: -9.42 kcal Total: -64.04 1.64 -62.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166387235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.649 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds