Wall clock time and date at job start Mon Mar 30 2020 07:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81398 * 102.99959 * 2 1 4 4 H 1.09003 * 109.47174 * 54.99634 * 3 2 1 5 5 C 1.53003 * 109.46824 * 294.99975 * 3 2 1 6 6 C 1.52996 * 109.47354 * 175.00098 * 3 2 1 7 7 N 1.46497 * 109.46926 * 299.99821 * 6 3 2 8 8 C 1.39858 * 120.00305 * 180.02562 * 7 6 3 9 9 C 1.39605 * 119.83684 * 359.97438 * 8 7 6 10 10 C 1.38045 * 120.55090 * 179.72715 * 9 8 7 11 11 C 1.38738 * 120.22210 * 0.25197 * 10 9 8 12 12 N 1.38862 * 120.16658 * 179.97438 * 11 10 9 13 13 C 1.41565 * 119.67176 * 0.02562 * 11 10 9 14 14 C 1.41025 * 120.26605 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00260 * 333.61743 * 14 13 11 16 16 C 1.39891 * 119.99691 * 153.62640 * 14 13 11 17 17 N 1.30900 * 120.00049 * 343.96870 * 16 14 13 18 18 Si 1.86802 * 119.99819 * 163.97645 * 16 14 13 19 19 H 1.48500 * 109.47450 * 89.99513 * 18 16 14 20 20 H 1.48502 * 109.46982 * 209.99769 * 18 16 14 21 21 H 1.48494 * 109.47121 * 329.99423 * 18 16 14 22 22 C 1.38000 * 119.84411 * 180.23492 * 8 7 6 23 23 H 1.08998 * 109.47525 * 299.99786 * 1 2 3 24 24 H 1.08996 * 109.47210 * 60.00366 * 1 2 3 25 25 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47579 * 59.99723 * 5 3 2 27 27 H 1.08998 * 109.47285 * 180.02562 * 5 3 2 28 28 H 1.09003 * 109.46967 * 299.99786 * 5 3 2 29 29 H 1.09001 * 109.46913 * 179.97438 * 6 3 2 30 30 H 1.08998 * 109.46901 * 59.99565 * 6 3 2 31 31 H 0.96997 * 120.00265 * 359.97438 * 7 6 3 32 32 H 1.08003 * 119.72081 * 359.97438 * 9 8 7 33 33 H 1.08007 * 119.89288 * 180.27658 * 10 9 8 34 34 H 0.96999 * 120.00288 * 0.02562 * 12 11 10 35 35 H 0.97005 * 120.00300 * 179.97438 * 12 11 10 36 36 H 0.96999 * 119.99610 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.11597 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4015 -1.3074 6 6 3.7369 1.9412 0.1257 7 7 4.1958 1.3342 1.3775 8 6 5.5526 1.3681 1.7150 9 6 6.4668 1.9810 0.8562 10 6 7.8086 2.0279 1.1774 11 6 8.2642 1.4600 2.3584 12 7 9.6142 1.5074 2.6801 13 6 7.3462 0.8310 3.2334 14 6 7.7956 0.2502 4.4373 15 1 8.8126 -0.1038 4.5195 16 6 6.9238 0.1323 5.5251 17 7 5.8129 0.8241 5.5515 18 14 7.3453 -1.0123 6.9399 19 1 8.1241 -0.2691 7.9628 20 1 6.0931 -1.5279 7.5493 21 1 8.1536 -2.1499 6.4324 22 6 5.9820 0.7910 2.8927 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.6635 2.2777 -1.3971 27 1 1.9883 3.4635 -1.3077 28 1 2.2354 1.9148 -2.1492 29 1 3.9820 3.0033 0.1252 30 1 4.2295 1.4546 -0.7161 31 1 3.5585 0.9093 1.9727 32 1 6.1209 2.4256 -0.0652 33 1 8.5060 2.5087 0.5073 34 1 10.2413 1.9387 2.0787 35 1 9.9302 1.1099 3.5066 36 1 5.2087 0.7426 6.3059 37 1 5.2725 0.3137 3.5525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166387350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:45 Heat of formation + Delta-G solvation = 14.786378 kcal Electronic energy + Delta-G solvation = -17665.237388 eV Core-core repulsion = 14953.813332 eV Total energy + Delta-G solvation = -2711.424056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -37.95508 -36.05974 -33.56247 -33.36720 -31.08882 -29.35972 -28.92220 -27.06476 -24.92755 -24.27322 -22.06575 -20.72975 -19.61091 -17.02734 -16.55156 -16.04157 -15.42915 -15.09370 -14.93258 -14.62133 -14.47106 -13.71785 -13.50231 -13.01031 -12.84628 -12.54931 -12.45615 -12.16693 -11.83854 -11.75150 -11.50043 -11.27005 -11.03838 -10.99211 -10.93262 -10.33896 -9.89226 -9.83364 -9.58434 -9.27294 -8.99910 -7.74528 -7.58607 -7.16499 -6.56616 -5.47822 -4.01602 1.68836 2.60489 2.95162 3.16603 3.20999 3.35476 3.53586 4.07723 4.35937 4.78137 4.86840 5.01895 5.03724 5.07936 5.24576 5.47285 5.49931 5.57677 5.66506 5.89610 5.94614 6.02710 6.16286 6.40882 6.67075 7.16755 7.19912 7.36720 7.54701 7.74751 7.92813 8.05742 8.17603 8.50845 8.80546 8.95770 8.99567 9.05503 9.30825 9.39274 10.42615 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.005226 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.480583 B = 5356.294331 C = 6528.620375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.237 6.237 3 C -0.070 4.070 4 H 0.089 0.911 5 C -0.144 4.144 6 C 0.160 3.840 7 N -0.759 5.759 8 C 0.179 3.821 9 C -0.256 4.256 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.096 3.904 14 C -0.465 4.465 15 H 0.070 0.930 16 C 0.077 3.923 17 N -0.800 5.800 18 Si 0.900 3.100 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.198 4.198 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.392 0.608 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.374 0.626 35 H 0.388 0.612 36 H 0.274 0.726 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 1.306 -8.232 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S -0.012 6.012 3 C -0.199 4.199 4 H 0.107 0.893 5 C -0.203 4.203 6 C 0.033 3.967 7 N -0.396 5.396 8 C 0.080 3.920 9 C -0.280 4.280 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.091 3.909 14 C -0.496 4.496 15 H 0.088 0.912 16 C -0.139 4.139 17 N -0.427 5.427 18 Si 0.725 3.275 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.223 4.223 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.198 0.802 35 H 0.216 0.784 36 H 0.085 0.915 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.937 0.558 -8.244 11.457 hybrid contribution -0.695 0.501 1.023 1.334 sum -8.632 1.059 -7.221 11.304 Atomic orbital electron populations 1.23419 0.95881 1.06139 1.04505 1.87336 1.05292 1.10835 1.97723 1.23464 1.00767 0.94207 1.01472 0.89262 1.22013 1.00986 1.01162 0.96148 1.20768 0.88647 0.97950 0.89295 1.44347 1.06102 1.66848 1.22283 1.17496 0.82193 0.97838 0.94448 1.19592 0.92713 1.14609 1.01113 1.19687 0.94783 1.06473 0.96747 1.17860 0.84753 1.02687 0.96354 1.41802 1.05402 1.69487 1.26485 1.16964 0.90520 0.91718 0.91735 1.19112 0.98103 1.36203 0.96183 0.91156 1.25735 0.94493 0.94403 0.99230 1.69880 1.10137 1.32716 1.29994 0.86457 0.78714 0.81312 0.80968 1.19911 1.20394 1.18785 1.20479 0.96530 1.09023 0.96242 0.90745 0.90839 0.88381 0.92532 0.91450 0.91142 0.92206 0.92717 0.77310 0.89845 0.89844 0.80155 0.78365 0.91506 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 10.45 101.05 1.06 -0.20 16 2 S -0.24 -3.24 20.99 -107.50 -2.26 -5.50 16 3 C -0.07 -0.89 2.93 -26.73 -0.08 -0.97 16 4 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 5 C -0.14 -1.42 9.10 37.16 0.34 -1.08 16 6 C 0.16 2.55 4.35 -4.05 -0.02 2.53 16 7 N -0.76 -15.09 5.45 -58.64 -0.32 -15.41 16 8 C 0.18 4.28 6.64 -83.77 -0.56 3.72 16 9 C -0.26 -5.95 9.31 -39.14 -0.36 -6.32 16 10 C -0.15 -3.58 9.86 -39.47 -0.39 -3.97 16 11 C 0.08 2.09 6.79 -83.22 -0.56 1.52 16 12 N -0.89 -18.60 8.98 32.75 0.29 -18.30 16 13 C 0.10 2.60 5.57 -106.66 -0.59 2.00 16 14 C -0.46 -12.43 8.48 -37.91 -0.32 -12.76 16 15 H 0.07 1.79 6.71 -52.49 -0.35 1.44 16 16 C 0.08 1.98 5.16 -17.33 -0.09 1.90 16 17 N -0.80 -21.30 10.97 55.55 0.61 -20.69 16 18 Si 0.90 19.26 29.59 -169.99 -5.03 14.23 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 22 C -0.20 -5.28 8.49 -38.75 -0.33 -5.61 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 25 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 30 H 0.05 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.39 7.75 7.98 -40.82 -0.33 7.42 16 32 H 0.08 1.75 6.69 -52.48 -0.35 1.40 16 33 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 35 H 0.39 7.96 7.06 -40.82 -0.29 7.67 16 36 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 37 H 0.12 3.25 6.23 -52.48 -0.33 2.93 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -29.08 314.93 -9.10 -38.17 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -5.23 Total: 21.97 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.91 Total: -19.22 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.58 Total: -54.40 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.26 Total: -5.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.08 -9.10 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166387350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.961 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds