Wall clock time and date at job start Mon Mar 30 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81398 * 102.99959 * 2 1 4 4 H 1.09003 * 109.47174 * 54.99634 * 3 2 1 5 5 C 1.53003 * 109.46824 * 294.99975 * 3 2 1 6 6 C 1.52996 * 109.47354 * 175.00098 * 3 2 1 7 7 N 1.46497 * 109.46926 * 299.99821 * 6 3 2 8 8 C 1.39858 * 120.00305 * 180.02562 * 7 6 3 9 9 C 1.39605 * 119.83684 * 359.97438 * 8 7 6 10 10 C 1.38045 * 120.55090 * 179.72715 * 9 8 7 11 11 C 1.38738 * 120.22210 * 0.25197 * 10 9 8 12 12 N 1.38862 * 120.16658 * 179.97438 * 11 10 9 13 13 C 1.41565 * 119.67176 * 0.02562 * 11 10 9 14 14 C 1.41025 * 120.26605 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00260 * 333.61743 * 14 13 11 16 16 C 1.39891 * 119.99691 * 153.62640 * 14 13 11 17 17 N 1.30900 * 120.00049 * 343.96870 * 16 14 13 18 18 Si 1.86802 * 119.99819 * 163.97645 * 16 14 13 19 19 H 1.48500 * 109.47450 * 89.99513 * 18 16 14 20 20 H 1.48502 * 109.46982 * 209.99769 * 18 16 14 21 21 H 1.48494 * 109.47121 * 329.99423 * 18 16 14 22 22 C 1.38000 * 119.84411 * 180.23492 * 8 7 6 23 23 H 1.08998 * 109.47525 * 299.99786 * 1 2 3 24 24 H 1.08996 * 109.47210 * 60.00366 * 1 2 3 25 25 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47579 * 59.99723 * 5 3 2 27 27 H 1.08998 * 109.47285 * 180.02562 * 5 3 2 28 28 H 1.09003 * 109.46967 * 299.99786 * 5 3 2 29 29 H 1.09001 * 109.46913 * 179.97438 * 6 3 2 30 30 H 1.08998 * 109.46901 * 59.99565 * 6 3 2 31 31 H 0.96997 * 120.00265 * 359.97438 * 7 6 3 32 32 H 1.08003 * 119.72081 * 359.97438 * 9 8 7 33 33 H 1.08007 * 119.89288 * 180.27658 * 10 9 8 34 34 H 0.96999 * 120.00288 * 0.02562 * 12 11 10 35 35 H 0.97005 * 120.00300 * 179.97438 * 12 11 10 36 36 H 0.96999 * 119.99610 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.11597 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4015 -1.3074 6 6 3.7369 1.9412 0.1257 7 7 4.1958 1.3342 1.3775 8 6 5.5526 1.3681 1.7150 9 6 6.4668 1.9810 0.8562 10 6 7.8086 2.0279 1.1774 11 6 8.2642 1.4600 2.3584 12 7 9.6142 1.5074 2.6801 13 6 7.3462 0.8310 3.2334 14 6 7.7956 0.2502 4.4373 15 1 8.8126 -0.1038 4.5195 16 6 6.9238 0.1323 5.5251 17 7 5.8129 0.8241 5.5515 18 14 7.3453 -1.0123 6.9399 19 1 8.1241 -0.2691 7.9628 20 1 6.0931 -1.5279 7.5493 21 1 8.1536 -2.1499 6.4324 22 6 5.9820 0.7910 2.8927 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.6635 2.2777 -1.3971 27 1 1.9883 3.4635 -1.3077 28 1 2.2354 1.9148 -2.1492 29 1 3.9820 3.0033 0.1252 30 1 4.2295 1.4546 -0.7161 31 1 3.5585 0.9093 1.9727 32 1 6.1209 2.4256 -0.0652 33 1 8.5060 2.5087 0.5073 34 1 10.2413 1.9387 2.0787 35 1 9.9302 1.1099 3.5066 36 1 5.2087 0.7426 6.3059 37 1 5.2725 0.3137 3.5525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166387350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:44 Heat of formation + Delta-G solvation = -2.941613 kcal Electronic energy + Delta-G solvation = -17666.006131 eV Core-core repulsion = 14953.813332 eV Total energy + Delta-G solvation = -2712.192799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75189 -37.53674 -35.33738 -34.92629 -32.59137 -31.28476 -29.79592 -28.58726 -26.74277 -25.74580 -23.47385 -22.33685 -21.43103 -18.90282 -17.95018 -17.43623 -17.22909 -16.66723 -16.48609 -16.15468 -15.73099 -14.76664 -14.52744 -14.48332 -14.20445 -14.09078 -13.68282 -13.55090 -13.43526 -13.23762 -13.05495 -12.82280 -12.65474 -12.47226 -12.11389 -12.07227 -11.69187 -11.42259 -11.15710 -10.90920 -10.70317 -9.39663 -9.11969 -8.66998 -8.48467 -7.27721 -5.98844 0.72697 1.13967 1.41543 1.50876 1.55478 1.66340 1.70055 2.28394 2.91042 2.97184 3.69771 3.79529 3.96929 4.00875 4.22615 4.33250 4.36522 4.61558 4.66419 4.70835 4.74077 4.86524 4.88989 4.98192 5.22136 5.25310 5.36107 5.44243 5.68465 5.90272 6.07824 6.18251 6.29574 6.58300 6.98754 7.07432 7.15145 7.26437 7.49019 7.68898 8.52775 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.005226 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.480583 B = 5356.294331 C = 6528.620375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.309 6.309 3 C -0.053 4.053 4 H 0.091 0.909 5 C -0.137 4.137 6 C 0.158 3.842 7 N -0.756 5.756 8 C 0.174 3.826 9 C -0.259 4.259 10 C -0.157 4.157 11 C 0.069 3.931 12 N -0.879 5.879 13 C 0.061 3.939 14 C -0.494 4.494 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.834 5.834 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.262 1.262 22 C -0.225 4.225 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.390 0.610 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.390 0.610 35 H 0.390 0.610 36 H 0.279 0.721 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 1.801 -9.094 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.084 6.084 3 C -0.182 4.182 4 H 0.109 0.891 5 C -0.196 4.196 6 C 0.033 3.967 7 N -0.391 5.391 8 C 0.074 3.926 9 C -0.283 4.283 10 C -0.181 4.181 11 C -0.033 4.033 12 N -0.423 5.423 13 C 0.056 3.944 14 C -0.525 4.525 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.461 5.461 18 Si 0.796 3.204 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.250 4.250 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.224 0.776 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.218 0.782 35 H 0.218 0.782 36 H 0.089 0.911 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.574 1.075 -9.139 12.578 hybrid contribution -0.558 0.388 1.184 1.365 sum -9.132 1.463 -7.955 12.199 Atomic orbital electron populations 1.23440 0.91550 1.07209 1.05803 1.87571 1.10189 1.12717 1.97923 1.23352 0.98277 0.93242 1.03300 0.89078 1.21988 1.02046 1.01508 0.94102 1.20931 0.91026 0.97702 0.87076 1.44439 1.04624 1.66560 1.23491 1.17621 0.84154 0.97104 0.93764 1.19917 0.92702 1.13978 1.01672 1.20049 0.95502 1.05931 0.96664 1.18035 0.85945 1.02742 0.96599 1.41673 1.04413 1.69334 1.26878 1.17354 0.91386 0.92857 0.92791 1.19383 0.98743 1.37466 0.96911 0.90803 1.26564 0.94202 0.95440 1.01700 1.69968 1.11163 1.33958 1.31034 0.85338 0.78516 0.78995 0.77566 1.18956 1.19904 1.18579 1.20438 0.96446 1.10735 0.97350 0.90048 0.88850 0.87451 0.90691 0.90128 0.91289 0.91553 0.93248 0.77590 0.87428 0.87036 0.78197 0.78233 0.91121 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.45 113.37 1.18 -0.71 16 2 S -0.31 -8.21 20.99 -56.49 -1.19 -9.40 16 3 C -0.05 -1.26 2.93 30.59 0.09 -1.17 16 4 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 5 C -0.14 -2.33 9.10 71.98 0.66 -1.68 16 6 C 0.16 4.89 4.35 86.38 0.38 5.26 16 7 N -0.76 -30.31 5.45 -339.44 -1.85 -32.16 16 8 C 0.17 8.44 6.64 38.13 0.25 8.69 16 9 C -0.26 -11.80 9.31 22.55 0.21 -11.59 16 10 C -0.16 -7.20 9.86 22.34 0.22 -6.97 16 11 C 0.07 3.41 6.79 38.97 0.26 3.67 16 12 N -0.88 -36.23 8.98 -50.31 -0.45 -36.68 16 13 C 0.06 3.41 5.57 -21.18 -0.12 3.29 16 14 C -0.49 -27.09 8.48 23.35 0.20 -26.89 16 15 H 0.07 3.83 6.71 -2.91 -0.02 3.81 16 16 C 0.03 1.76 5.16 85.23 0.44 2.20 16 17 N -0.83 -45.73 10.97 21.82 0.24 -45.49 16 18 Si 0.97 40.10 29.59 68.60 2.03 42.13 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 C -0.22 -12.42 8.49 22.81 0.19 -12.23 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.23 7.14 -2.39 -0.02 1.21 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.02 6.92 -2.39 -0.02 1.00 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.98 7.94 -2.39 -0.02 1.96 16 30 H 0.05 1.59 7.94 -2.39 -0.02 1.57 16 31 H 0.39 15.83 7.98 -92.71 -0.74 15.09 16 32 H 0.11 4.30 6.69 -2.91 -0.02 4.28 16 33 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 34 H 0.39 13.25 8.83 -92.71 -0.82 12.43 16 35 H 0.39 15.90 7.06 -92.70 -0.65 15.25 16 36 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 37 H 0.09 5.52 6.23 -2.91 -0.02 5.51 16 Total: -1.00 -64.12 314.93 1.64 -62.48 By element: Atomic # 1 Polarization: 58.36 SS G_CDS: -1.11 Total: 57.25 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 3.97 Total: -38.13 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -2.06 Total: -114.33 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.19 Total: -9.40 kcal Total: -64.12 1.64 -62.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166387350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.535 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds