Wall clock time and date at job start Mon Mar 30 2020 07:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47022 * 2 1 4 4 N 1.46904 * 109.47209 * 120.00620 * 2 1 3 5 5 C 1.46894 * 110.99504 * 274.99603 * 4 2 1 6 6 C 1.53004 * 109.46863 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47207 * 180.02562 * 6 5 4 8 8 S 1.81000 * 109.47120 * 179.97438 * 7 6 5 9 9 C 1.76203 * 100.00000 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99713 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99852 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99870 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00214 * 0.02562 * 11 9 8 14 14 H 1.48509 * 109.46956 * 89.99884 * 13 11 9 15 15 H 1.48501 * 109.47276 * 209.99737 * 13 11 9 16 16 H 1.48501 * 109.46864 * 330.00279 * 13 11 9 17 17 C 1.50698 * 109.46431 * 240.00223 * 2 1 3 18 18 C 1.38660 * 120.78840 * 100.00445 * 17 2 1 19 19 C 1.38205 * 119.16082 * 179.97438 * 18 17 2 20 20 N 1.31867 * 120.76614 * 359.97438 * 19 18 17 21 21 C 1.31874 * 121.72561 * 359.97438 * 20 19 18 22 22 C 1.38201 * 120.76346 * 0.02785 * 21 20 19 23 23 H 1.09003 * 109.46600 * 299.99414 * 1 2 3 24 24 H 1.08997 * 109.47683 * 59.99291 * 1 2 3 25 25 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 26 26 H 1.00899 * 110.99212 * 151.04287 * 4 2 1 27 27 H 1.08997 * 109.47599 * 300.00123 * 5 4 2 28 28 H 1.08998 * 109.47728 * 60.00390 * 5 4 2 29 29 H 1.09011 * 109.46800 * 299.99650 * 6 5 4 30 30 H 1.08992 * 109.47211 * 59.99848 * 6 5 4 31 31 H 1.09002 * 109.46654 * 299.99067 * 7 6 5 32 32 H 1.08992 * 109.47509 * 59.99602 * 7 6 5 33 33 H 0.97007 * 119.99866 * 180.02562 * 12 11 9 34 34 H 1.07995 * 120.41642 * 0.24421 * 18 17 2 35 35 H 1.07995 * 119.61248 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.61619 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.41638 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2224 2.3468 6 6 2.5964 -0.5332 3.5741 7 6 2.6613 0.4197 4.7693 8 16 3.2684 -0.4743 6.2213 9 6 3.2440 0.8240 7.4123 10 1 2.9153 1.8124 7.1270 11 6 3.6462 0.5761 8.7174 12 7 3.6285 1.5462 9.6070 13 14 4.2141 -1.1336 9.2111 14 1 5.6797 -1.2484 9.0008 15 1 3.9000 -1.3651 10.6439 16 1 3.5141 -2.1466 8.3809 17 6 2.0322 -0.7104 -1.2305 18 6 2.4638 0.0054 -2.3369 19 6 2.9182 -0.6804 -3.4474 20 7 2.9445 -1.9987 -3.4619 21 6 2.5428 -2.7118 -2.4279 22 6 2.0756 -2.0952 -1.2827 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 2.9173 -1.1206 1.0285 27 1 2.7589 1.0460 2.1182 28 1 1.0872 0.6161 2.5526 29 1 1.9202 -1.3570 3.8029 30 1 3.5917 -0.9265 3.3681 31 1 3.3372 1.2437 4.5408 32 1 1.6657 0.8128 4.9752 33 1 3.9100 1.3730 10.5191 34 1 2.4492 1.0853 -2.3292 35 1 3.2557 -0.1302 -4.3132 36 1 2.5794 -3.7901 -2.4765 37 1 1.7476 -2.6847 -0.4392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182871754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:56 Heat of formation + Delta-G solvation = 15.136627 kcal Electronic energy + Delta-G solvation = -16756.923100 eV Core-core repulsion = 14045.514232 eV Total energy + Delta-G solvation = -2711.408868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56218 -37.54474 -34.33496 -32.45073 -31.68979 -31.39733 -29.48163 -25.89949 -25.37976 -24.07362 -23.50150 -21.24630 -20.89116 -17.51367 -17.23434 -16.74785 -15.92258 -15.69707 -15.07789 -14.88010 -14.68830 -14.46497 -13.98632 -13.78167 -13.70148 -12.91883 -12.75360 -12.44688 -12.39907 -12.03853 -11.76208 -11.54694 -11.41400 -11.07296 -11.04290 -10.54514 -10.21179 -9.89197 -9.77687 -9.73412 -9.43846 -9.01753 -8.65942 -8.57869 -6.95698 -6.29592 -4.01993 0.84470 0.92987 2.98946 3.29180 3.44720 3.50103 3.55439 3.91076 4.17322 4.21640 4.30687 4.55708 4.78728 4.81921 4.87300 4.98740 5.04017 5.09079 5.17386 5.34039 5.35875 5.42334 5.51275 5.57535 5.59129 5.71575 5.78311 5.88151 6.01931 6.03181 6.18779 6.41118 6.44710 6.59067 6.85034 7.16275 7.68199 7.94188 8.42890 9.16326 10.79906 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042087 B = 0.002895 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.126994 B = 9670.140006 C = 9980.108524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.121 3.879 3 H 0.056 0.944 4 N -0.682 5.682 5 C 0.063 3.937 6 C -0.098 4.098 7 C -0.082 4.082 8 S -0.215 6.215 9 C -0.502 4.502 10 H 0.088 0.912 11 C 0.091 3.909 12 N -0.882 5.882 13 Si 0.862 3.138 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.237 1.237 17 C -0.044 4.044 18 C -0.169 4.169 19 C 0.096 3.904 20 N -0.489 5.489 21 C 0.096 3.904 22 C -0.153 4.153 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.343 0.657 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.270 0.730 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -4.537 -23.706 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.074 0.926 4 N -0.314 5.314 5 C -0.068 4.068 6 C -0.137 4.137 7 C -0.231 4.231 8 S 0.013 5.987 9 C -0.650 4.650 10 H 0.106 0.894 11 C -0.117 4.117 12 N -0.519 5.519 13 Si 0.687 3.313 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.161 1.161 17 C -0.053 4.053 18 C -0.189 4.189 19 C -0.061 4.061 20 N -0.198 5.198 21 C -0.061 4.061 22 C -0.173 4.173 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.161 0.839 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.059 -6.230 -23.953 25.080 hybrid contribution 0.435 1.790 0.931 2.064 sum -3.624 -4.441 -23.022 23.725 Atomic orbital electron populations 1.21784 0.93016 1.02878 1.01674 1.20485 0.96513 0.95348 0.86487 0.92603 1.60614 1.33633 1.33457 1.03691 1.22078 1.01038 0.93623 0.90022 1.21296 1.01776 0.98437 0.92220 1.23000 1.03192 1.00447 0.96455 1.84165 1.86967 1.21612 1.05980 1.22125 1.51208 0.96284 0.95380 0.89443 1.24805 0.94029 0.97584 0.95290 1.69941 1.46019 1.32131 1.03812 0.86664 0.80462 0.85085 0.79095 1.19392 1.20096 1.16122 1.20437 0.95201 0.94245 0.95388 1.22069 1.01003 1.01393 0.94454 1.22726 0.95664 0.90261 0.97444 1.67672 1.14927 1.08072 1.29155 1.22829 0.94121 1.00427 0.88712 1.22124 1.00395 0.94788 1.00001 0.91777 0.92566 0.91640 0.83852 0.95062 0.90683 0.90542 0.91733 0.91636 0.91333 0.91969 0.84927 0.82846 0.82690 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.40 37.16 0.35 -0.81 16 2 C 0.12 1.09 2.85 -68.86 -0.20 0.89 16 3 H 0.06 0.50 7.70 -51.93 -0.40 0.10 16 4 N -0.68 -7.00 5.77 -107.95 -0.62 -7.62 16 5 C 0.06 0.74 5.48 -3.83 -0.02 0.72 16 6 C -0.10 -1.45 5.48 -26.73 -0.15 -1.60 16 7 C -0.08 -1.55 5.67 37.16 0.21 -1.34 16 8 S -0.21 -5.22 19.41 -107.50 -2.09 -7.31 16 9 C -0.50 -14.57 10.04 30.94 0.31 -14.26 16 10 H 0.09 2.70 8.03 -52.49 -0.42 2.27 16 11 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 12 N -0.88 -26.79 13.97 55.49 0.78 -26.01 16 13 Si 0.86 21.54 27.74 -169.99 -4.72 16.83 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 17 C -0.04 -0.39 4.73 -104.32 -0.49 -0.88 16 18 C -0.17 -1.37 9.78 -39.44 -0.39 -1.75 16 19 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 20 N -0.49 -5.01 10.36 -13.25 -0.14 -5.15 16 21 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 22 C -0.15 -1.33 9.12 -39.44 -0.36 -1.69 16 23 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.34 3.43 8.01 -39.29 -0.31 3.12 16 27 H 0.03 0.37 8.05 -51.93 -0.42 -0.05 16 28 H 0.07 0.89 7.44 -51.93 -0.39 0.51 16 29 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 32 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 1.16 7.80 -52.48 -0.41 0.75 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -31.58 324.44 -8.82 -40.39 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.70 Total: 0.86 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.22 Total: -16.87 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.01 Total: -38.79 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -2.09 Total: -7.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.58 -8.82 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182871754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.527 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds