Wall clock time and date at job start Mon Mar 30 2020 07:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47022 * 2 1 4 4 N 1.46904 * 109.47209 * 120.00620 * 2 1 3 5 5 C 1.46894 * 110.99504 * 274.99603 * 4 2 1 6 6 C 1.53004 * 109.46863 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47207 * 180.02562 * 6 5 4 8 8 S 1.81000 * 109.47120 * 179.97438 * 7 6 5 9 9 C 1.76203 * 100.00000 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99713 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99852 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99870 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00214 * 0.02562 * 11 9 8 14 14 H 1.48509 * 109.46956 * 89.99884 * 13 11 9 15 15 H 1.48501 * 109.47276 * 209.99737 * 13 11 9 16 16 H 1.48501 * 109.46864 * 330.00279 * 13 11 9 17 17 C 1.50698 * 109.46431 * 240.00223 * 2 1 3 18 18 C 1.38660 * 120.78840 * 100.00445 * 17 2 1 19 19 C 1.38205 * 119.16082 * 179.97438 * 18 17 2 20 20 N 1.31867 * 120.76614 * 359.97438 * 19 18 17 21 21 C 1.31874 * 121.72561 * 359.97438 * 20 19 18 22 22 C 1.38201 * 120.76346 * 0.02785 * 21 20 19 23 23 H 1.09003 * 109.46600 * 299.99414 * 1 2 3 24 24 H 1.08997 * 109.47683 * 59.99291 * 1 2 3 25 25 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 26 26 H 1.00899 * 110.99212 * 151.04287 * 4 2 1 27 27 H 1.08997 * 109.47599 * 300.00123 * 5 4 2 28 28 H 1.08998 * 109.47728 * 60.00390 * 5 4 2 29 29 H 1.09011 * 109.46800 * 299.99650 * 6 5 4 30 30 H 1.08992 * 109.47211 * 59.99848 * 6 5 4 31 31 H 1.09002 * 109.46654 * 299.99067 * 7 6 5 32 32 H 1.08992 * 109.47509 * 59.99602 * 7 6 5 33 33 H 0.97007 * 119.99866 * 180.02562 * 12 11 9 34 34 H 1.07995 * 120.41642 * 0.24421 * 18 17 2 35 35 H 1.07995 * 119.61248 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.61619 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.41638 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2224 2.3468 6 6 2.5964 -0.5332 3.5741 7 6 2.6613 0.4197 4.7693 8 16 3.2684 -0.4743 6.2213 9 6 3.2440 0.8240 7.4123 10 1 2.9153 1.8124 7.1270 11 6 3.6462 0.5761 8.7174 12 7 3.6285 1.5462 9.6070 13 14 4.2141 -1.1336 9.2111 14 1 5.6797 -1.2484 9.0008 15 1 3.9000 -1.3651 10.6439 16 1 3.5141 -2.1466 8.3809 17 6 2.0322 -0.7104 -1.2305 18 6 2.4638 0.0054 -2.3369 19 6 2.9182 -0.6804 -3.4474 20 7 2.9445 -1.9987 -3.4619 21 6 2.5428 -2.7118 -2.4279 22 6 2.0756 -2.0952 -1.2827 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 2.9173 -1.1206 1.0285 27 1 2.7589 1.0460 2.1182 28 1 1.0872 0.6161 2.5526 29 1 1.9202 -1.3570 3.8029 30 1 3.5917 -0.9265 3.3681 31 1 3.3372 1.2437 4.5408 32 1 1.6657 0.8128 4.9752 33 1 3.9100 1.3730 10.5191 34 1 2.4492 1.0853 -2.3292 35 1 3.2557 -0.1302 -4.3132 36 1 2.5794 -3.7901 -2.4765 37 1 1.7476 -2.6847 -0.4392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182871754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:55 Heat of formation + Delta-G solvation = -4.868380 kcal Electronic energy + Delta-G solvation = -16757.790582 eV Core-core repulsion = 14045.514232 eV Total energy + Delta-G solvation = -2712.276350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20587 -38.36953 -35.35212 -34.68939 -32.55156 -32.06307 -30.29991 -27.99106 -26.54261 -24.82031 -24.24802 -22.40971 -21.60325 -19.61646 -17.98570 -17.46052 -17.11107 -16.74831 -16.42768 -16.29803 -15.61858 -15.34910 -15.15398 -14.91570 -14.54650 -14.40896 -13.87687 -13.68587 -13.45817 -13.21928 -13.02085 -12.86531 -12.62611 -12.42291 -12.23547 -12.01604 -11.71865 -11.62026 -11.16762 -10.58751 -10.53027 -10.41046 -10.05710 -9.47520 -8.99302 -8.52538 -6.23708 0.22710 0.27675 1.12803 1.31882 1.47946 1.74638 2.24577 2.68106 2.85595 2.86777 3.07169 3.51485 3.63637 3.93535 4.00211 4.16012 4.19853 4.27107 4.27882 4.35809 4.43930 4.51013 4.72594 4.75010 4.76134 4.83730 4.91547 4.95681 5.07740 5.17807 5.26153 5.32440 5.39100 5.69115 5.80361 6.00364 6.09456 6.35868 6.91670 7.05087 8.60589 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042087 B = 0.002895 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.126994 B = 9670.140006 C = 9980.108524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.125 3.875 3 H 0.061 0.939 4 N -0.682 5.682 5 C 0.074 3.926 6 C -0.086 4.086 7 C -0.070 4.070 8 S -0.221 6.221 9 C -0.522 4.522 10 H 0.050 0.950 11 C 0.036 3.964 12 N -0.923 5.923 13 Si 0.926 3.074 14 H -0.262 1.262 15 H -0.263 1.263 16 H -0.228 1.228 17 C -0.051 4.051 18 C -0.169 4.169 19 C 0.087 3.913 20 N -0.515 5.515 21 C 0.086 3.914 22 C -0.156 4.156 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.346 0.654 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.277 0.723 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.172 0.828 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 -5.627 -25.078 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.016 3.984 3 H 0.079 0.921 4 N -0.314 5.314 5 C -0.057 4.057 6 C -0.125 4.125 7 C -0.219 4.219 8 S 0.007 5.993 9 C -0.670 4.670 10 H 0.068 0.932 11 C -0.168 4.168 12 N -0.561 5.561 13 Si 0.747 3.253 14 H -0.186 1.186 15 H -0.188 1.188 16 H -0.151 1.151 17 C -0.060 4.060 18 C -0.189 4.189 19 C -0.070 4.070 20 N -0.225 5.225 21 C -0.070 4.070 22 C -0.176 4.176 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.165 0.835 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.170 0.830 35 H 0.192 0.808 36 H 0.189 0.811 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.982 -7.317 -25.337 26.671 hybrid contribution 0.365 2.224 1.250 2.577 sum -3.617 -5.092 -24.088 24.884 Atomic orbital electron populations 1.21767 0.92752 1.02607 1.02014 1.20471 0.96624 0.95436 0.85889 0.92079 1.60561 1.33882 1.33197 1.03805 1.21874 1.01023 0.93452 0.89364 1.21174 1.02248 0.97528 0.91523 1.23074 1.02546 1.00827 0.95418 1.83858 1.87557 1.20828 1.07077 1.22352 1.50959 0.96476 0.97210 0.93165 1.25803 0.93978 1.01819 0.95222 1.70042 1.47057 1.34519 1.04514 0.85700 0.80243 0.79972 0.79343 1.18614 1.18785 1.15150 1.20495 0.95556 0.94389 0.95566 1.22290 1.00247 1.02430 0.93941 1.23137 0.95415 0.90012 0.98409 1.67694 1.15843 1.09051 1.29922 1.23138 0.93978 1.01353 0.88580 1.22191 1.00406 0.94944 1.00084 0.92200 0.91477 0.92207 0.83541 0.94621 0.90516 0.90750 0.91278 0.91758 0.91542 0.91401 0.82977 0.80783 0.81100 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.40 71.98 0.68 -1.35 16 2 C 0.13 1.96 2.85 44.17 0.13 2.09 16 3 H 0.06 0.92 7.70 -2.39 -0.02 0.91 16 4 N -0.68 -12.50 5.77 -495.46 -2.86 -15.36 16 5 C 0.07 1.59 5.48 86.31 0.47 2.06 16 6 C -0.09 -2.36 5.48 30.59 0.17 -2.19 16 7 C -0.07 -2.58 5.67 71.98 0.41 -2.17 16 8 S -0.22 -10.57 19.41 -56.49 -1.10 -11.66 16 9 C -0.52 -30.83 10.04 67.95 0.68 -30.15 16 10 H 0.05 3.22 8.03 -2.91 -0.02 3.20 16 11 C 0.04 2.14 5.50 84.86 0.47 2.61 16 12 N -0.92 -56.98 13.97 21.65 0.30 -56.68 16 13 Si 0.93 44.12 27.74 68.60 1.90 46.02 16 14 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.23 -10.45 6.74 99.48 0.67 -9.78 16 17 C -0.05 -0.80 4.73 -19.67 -0.09 -0.90 16 18 C -0.17 -2.37 9.78 22.36 0.22 -2.15 16 19 C 0.09 1.33 11.18 84.68 0.95 2.28 16 20 N -0.52 -9.92 10.36 -195.85 -2.03 -11.95 16 21 C 0.09 1.42 11.18 84.68 0.95 2.37 16 22 C -0.16 -2.47 9.12 22.36 0.20 -2.27 16 23 H 0.06 0.96 7.45 -2.39 -0.02 0.94 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.35 6.14 8.01 -89.69 -0.72 5.42 16 27 H 0.04 0.75 8.05 -2.39 -0.02 0.73 16 28 H 0.08 1.66 7.44 -2.39 -0.02 1.64 16 29 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 2.49 8.14 -2.40 -0.02 2.47 16 33 H 0.28 15.71 8.31 -92.70 -0.77 14.94 16 34 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.15 2.16 7.80 -2.91 -0.02 2.14 16 Total: -1.00 -67.76 324.44 1.73 -66.03 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.29 Total: 13.38 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 5.22 Total: -29.77 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -4.59 Total: -83.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.02 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.10 Total: -11.66 kcal Total: -67.76 1.73 -66.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182871754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.160 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds