Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33644 * 126.03326 * 2 1 4 4 N 1.31781 * 114.49886 * 179.73827 * 3 2 1 5 5 C 1.29026 * 117.12417 * 359.97438 * 4 3 2 6 6 C 1.50706 * 124.91499 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.46635 * 194.97669 * 6 5 4 8 8 N 1.46895 * 109.46629 * 314.97389 * 6 5 4 9 9 C 1.46908 * 110.99761 * 204.99911 * 8 6 5 10 10 H 1.08997 * 109.46813 * 325.00593 * 9 8 6 11 11 C 1.52994 * 109.46719 * 85.00348 * 9 8 6 12 12 C 1.50697 * 109.47007 * 205.00172 * 9 8 6 13 13 H 1.07997 * 120.00101 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99760 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00102 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00044 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.46719 * 90.00277 * 16 14 12 18 18 H 1.48495 * 109.47223 * 210.00302 * 16 14 12 19 19 H 1.48497 * 109.47068 * 330.00490 * 16 14 12 20 20 C 1.53001 * 109.47131 * 74.97369 * 6 5 4 21 21 C 1.53004 * 117.49264 * 128.74719 * 20 6 5 22 22 C 1.52997 * 117.49711 * 60.09131 * 20 6 5 23 23 S 1.70976 * 110.16782 * 0.02562 * 5 4 3 24 24 H 1.08995 * 109.46961 * 90.02910 * 1 2 3 25 25 H 1.09006 * 109.46593 * 210.02555 * 1 2 3 26 26 H 1.08995 * 109.47648 * 330.02741 * 1 2 3 27 27 H 1.07999 * 122.74781 * 359.73229 * 3 2 1 28 28 H 1.00898 * 111.00497 * 328.95363 * 8 6 5 29 29 H 1.09000 * 109.47005 * 180.02562 * 11 9 8 30 30 H 1.09002 * 109.47233 * 299.99799 * 11 9 8 31 31 H 1.08994 * 109.47685 * 60.00206 * 11 9 8 32 32 H 0.97001 * 120.00350 * 180.02562 * 15 14 12 33 33 H 1.08997 * 115.55251 * 274.41576 * 20 6 5 34 34 H 1.08995 * 117.50190 * 0.02562 * 21 20 6 35 35 H 1.09006 * 117.49178 * 145.02572 * 21 20 6 36 36 H 1.09001 * 117.49954 * 214.98022 * 22 20 6 37 37 H 1.09007 * 117.49891 * 359.96833 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8173 0.0055 5 6 3.9312 -0.4255 0.0106 6 6 5.3533 -0.9242 0.0178 7 1 5.3686 -1.9821 -0.2445 8 7 6.1431 -0.1655 -0.9610 9 6 7.3000 -0.9449 -1.4218 10 1 7.6811 -1.5501 -0.5992 11 6 6.8736 -1.8587 -2.5723 12 6 8.3796 -0.0077 -1.8983 13 1 8.2223 1.0601 -1.8621 14 6 9.5686 -0.5135 -2.3794 15 7 9.7603 -1.8138 -2.4230 16 14 10.9066 0.6482 -2.9708 17 1 11.7997 0.9931 -1.8357 18 1 11.6977 -0.0115 -4.0404 19 1 10.2860 1.8864 -3.5063 20 6 5.9527 -0.7359 1.4129 21 6 6.6225 -1.9480 2.0634 22 6 5.2686 -1.4532 2.5784 23 16 2.5437 -1.4246 0.0080 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3634 0.8902 0.5134 27 1 1.9023 2.0875 -0.0042 28 1 5.5709 0.1266 -1.7391 29 1 7.7318 -2.4374 -2.9139 30 1 6.0927 -2.5366 -2.2277 31 1 6.4924 -1.2537 -3.3949 32 1 10.5969 -2.1697 -2.7612 33 1 6.3860 0.2446 1.6100 34 1 6.6366 -2.8794 1.4973 35 1 7.4963 -1.7647 2.6888 36 1 5.2521 -0.9447 3.5424 37 1 4.3912 -2.0589 2.3514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185344332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = 66.578054 kcal Electronic energy + Delta-G solvation = -18062.707303 eV Core-core repulsion = 15353.529102 eV Total energy + Delta-G solvation = -2709.178200 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.68585 -37.63579 -35.17288 -33.01289 -32.02585 -29.46614 -26.79858 -25.22720 -24.85465 -23.37358 -22.03084 -20.89722 -20.12016 -18.37657 -17.93231 -16.31642 -15.54342 -15.09690 -14.82161 -14.62385 -14.26073 -13.81831 -13.42716 -13.03758 -12.81514 -12.76998 -12.38562 -12.21068 -11.63383 -11.28959 -11.18655 -11.11584 -10.90518 -10.75501 -10.56568 -10.16373 -10.02609 -9.88909 -9.73978 -9.22153 -9.08158 -8.97337 -8.60280 -8.32239 -7.27221 -5.95277 -3.97436 0.83591 1.43574 1.87350 3.03845 3.36219 3.42108 3.47146 4.07909 4.46166 4.49132 4.87737 4.93115 5.05851 5.16492 5.27399 5.32933 5.36909 5.51905 5.63049 5.65564 5.83030 5.83293 5.89175 6.06975 6.24227 6.32187 6.42968 6.66753 6.75028 6.83252 7.08781 7.35452 7.74508 7.90441 8.00924 8.28416 8.52881 8.61941 9.09845 9.67403 11.12030 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.005164 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.924074 B = 5420.537371 C = 5823.888060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.238 4.238 3 C 0.036 3.964 4 N -0.449 5.449 5 C 0.073 3.927 6 C 0.196 3.804 7 H 0.055 0.945 8 N -0.659 5.659 9 C 0.211 3.789 10 H 0.041 0.959 11 C -0.172 4.172 12 C -0.490 4.490 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.116 4.116 21 C -0.170 4.170 22 C -0.192 4.192 23 S 0.093 5.907 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.171 0.829 28 H 0.331 0.669 29 H 0.091 0.909 30 H 0.002 0.998 31 H 0.028 0.972 32 H 0.259 0.741 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.056 -0.524 6.612 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.359 4.359 3 C -0.115 4.115 4 N -0.161 5.161 5 C -0.206 4.206 6 C 0.082 3.918 7 H 0.072 0.928 8 N -0.290 5.290 9 C 0.103 3.897 10 H 0.059 0.941 11 C -0.231 4.231 12 C -0.529 4.529 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.136 4.136 21 C -0.207 4.207 22 C -0.229 4.229 23 S 0.348 5.652 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.188 0.812 28 H 0.149 0.851 29 H 0.110 0.890 30 H 0.021 0.979 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.298 -0.979 7.018 16.860 hybrid contribution 0.004 0.742 -0.973 1.224 sum -15.294 -0.237 6.045 16.447 Atomic orbital electron populations 1.20163 0.87154 1.03006 1.02629 1.25903 1.01244 0.95207 1.13551 1.21792 0.87262 0.99832 1.02660 1.66240 1.16617 1.18505 1.14743 1.27363 1.00354 0.90943 1.01955 1.19657 0.82699 0.95290 0.94185 0.92772 1.60830 1.09563 1.41331 1.17277 1.19292 0.86624 0.91130 0.92639 0.94103 1.22478 1.00299 0.99984 1.00330 1.21119 0.98273 0.93485 1.40047 0.91853 1.24921 0.98341 0.95100 0.96089 1.69874 1.25271 1.10977 1.47714 0.86514 0.81740 0.80926 0.78304 1.20783 1.21495 1.19949 1.22188 1.02407 0.98084 0.90926 1.22982 0.95499 0.98567 1.03638 1.22980 0.96425 1.04879 0.98641 1.83939 0.99700 1.12288 1.69245 0.90859 0.91419 0.90507 0.81220 0.85072 0.89029 0.97861 0.95306 0.93132 0.86500 0.88921 0.88696 0.89117 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.01 0.38 -0.21 16 2 C -0.24 -2.90 6.60 -35.92 -0.24 -3.14 16 3 C 0.04 0.50 11.25 -19.18 -0.22 0.28 16 4 N -0.45 -7.70 10.50 -11.86 -0.12 -7.83 16 5 C 0.07 1.22 5.55 -13.45 -0.07 1.14 16 6 C 0.20 3.63 2.55 -68.86 -0.18 3.45 16 7 H 0.05 1.02 6.87 -51.93 -0.36 0.67 16 8 N -0.66 -14.40 6.00 -102.17 -0.61 -15.01 16 9 C 0.21 5.25 2.39 -68.86 -0.16 5.09 16 10 H 0.04 1.10 7.62 -51.93 -0.40 0.70 16 11 C -0.17 -4.12 8.92 37.15 0.33 -3.79 16 12 C -0.49 -13.60 8.84 -34.44 -0.30 -13.91 16 13 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 15 N -0.90 -25.55 11.32 55.43 0.63 -24.93 16 16 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.12 -2.03 5.12 -90.62 -0.46 -2.50 16 21 C -0.17 -2.69 10.15 -26.69 -0.27 -2.96 16 22 C -0.19 -2.75 9.87 -26.70 -0.26 -3.02 16 23 S 0.09 1.26 23.18 -107.50 -2.49 -1.23 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.33 7.25 8.09 -39.29 -0.32 6.93 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.00 0.05 7.43 -51.93 -0.39 -0.33 16 31 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.12 2.25 8.14 -51.93 -0.42 1.83 16 34 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -29.21 322.24 -9.86 -39.07 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.54 Total: 6.51 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.56 Total: -18.10 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.11 Total: -47.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.21 -9.86 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185344332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.651 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds