Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33644 * 126.03326 * 2 1 4 4 N 1.31781 * 114.49886 * 179.73827 * 3 2 1 5 5 C 1.29026 * 117.12417 * 359.97438 * 4 3 2 6 6 C 1.50706 * 124.91499 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.46635 * 194.97669 * 6 5 4 8 8 N 1.46895 * 109.46629 * 314.97389 * 6 5 4 9 9 C 1.46908 * 110.99761 * 204.99911 * 8 6 5 10 10 H 1.08997 * 109.46813 * 325.00593 * 9 8 6 11 11 C 1.52994 * 109.46719 * 85.00348 * 9 8 6 12 12 C 1.50697 * 109.47007 * 205.00172 * 9 8 6 13 13 H 1.07997 * 120.00101 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99760 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00102 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00044 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.46719 * 90.00277 * 16 14 12 18 18 H 1.48495 * 109.47223 * 210.00302 * 16 14 12 19 19 H 1.48497 * 109.47068 * 330.00490 * 16 14 12 20 20 C 1.53001 * 109.47131 * 74.97369 * 6 5 4 21 21 C 1.53004 * 117.49264 * 128.74719 * 20 6 5 22 22 C 1.52997 * 117.49711 * 60.09131 * 20 6 5 23 23 S 1.70976 * 110.16782 * 0.02562 * 5 4 3 24 24 H 1.08995 * 109.46961 * 90.02910 * 1 2 3 25 25 H 1.09006 * 109.46593 * 210.02555 * 1 2 3 26 26 H 1.08995 * 109.47648 * 330.02741 * 1 2 3 27 27 H 1.07999 * 122.74781 * 359.73229 * 3 2 1 28 28 H 1.00898 * 111.00497 * 328.95363 * 8 6 5 29 29 H 1.09000 * 109.47005 * 180.02562 * 11 9 8 30 30 H 1.09002 * 109.47233 * 299.99799 * 11 9 8 31 31 H 1.08994 * 109.47685 * 60.00206 * 11 9 8 32 32 H 0.97001 * 120.00350 * 180.02562 * 15 14 12 33 33 H 1.08997 * 115.55251 * 274.41576 * 20 6 5 34 34 H 1.08995 * 117.50190 * 0.02562 * 21 20 6 35 35 H 1.09006 * 117.49178 * 145.02572 * 21 20 6 36 36 H 1.09001 * 117.49954 * 214.98022 * 22 20 6 37 37 H 1.09007 * 117.49891 * 359.96833 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8173 0.0055 5 6 3.9312 -0.4255 0.0106 6 6 5.3533 -0.9242 0.0178 7 1 5.3686 -1.9821 -0.2445 8 7 6.1431 -0.1655 -0.9610 9 6 7.3000 -0.9449 -1.4218 10 1 7.6811 -1.5501 -0.5992 11 6 6.8736 -1.8587 -2.5723 12 6 8.3796 -0.0077 -1.8983 13 1 8.2223 1.0601 -1.8621 14 6 9.5686 -0.5135 -2.3794 15 7 9.7603 -1.8138 -2.4230 16 14 10.9066 0.6482 -2.9708 17 1 11.7997 0.9931 -1.8357 18 1 11.6977 -0.0115 -4.0404 19 1 10.2860 1.8864 -3.5063 20 6 5.9527 -0.7359 1.4129 21 6 6.6225 -1.9480 2.0634 22 6 5.2686 -1.4532 2.5784 23 16 2.5437 -1.4246 0.0080 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3634 0.8902 0.5134 27 1 1.9023 2.0875 -0.0042 28 1 5.5709 0.1266 -1.7391 29 1 7.7318 -2.4374 -2.9139 30 1 6.0927 -2.5366 -2.2277 31 1 6.4924 -1.2537 -3.3949 32 1 10.5969 -2.1697 -2.7612 33 1 6.3860 0.2446 1.6100 34 1 6.6366 -2.8794 1.4973 35 1 7.4963 -1.7647 2.6888 36 1 5.2521 -0.9447 3.5424 37 1 4.3912 -2.0589 2.3514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185344332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = 48.788646 kcal Electronic energy + Delta-G solvation = -18063.478709 eV Core-core repulsion = 15353.529102 eV Total energy + Delta-G solvation = -2709.949607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86041 -39.01344 -36.88178 -34.56243 -33.41866 -31.06074 -28.19933 -27.22025 -26.17517 -24.55400 -23.25700 -22.47839 -21.71591 -19.67084 -19.08913 -18.25491 -16.97573 -16.67150 -16.33118 -16.01682 -15.41783 -15.22964 -14.86566 -14.28295 -14.05845 -13.92126 -13.66836 -13.56723 -13.42898 -12.91803 -12.82533 -12.58685 -12.43195 -12.33268 -12.16457 -12.04710 -11.93017 -11.31678 -11.06550 -10.97270 -10.45603 -10.40594 -10.15471 -9.66625 -9.02078 -8.07880 -6.17514 -0.25559 0.36704 0.78546 1.43379 1.43964 1.54827 1.92765 2.45579 2.81967 3.20682 3.29794 3.43531 3.90715 3.98113 4.07568 4.17574 4.30885 4.31709 4.41803 4.66120 4.71821 4.75595 4.76508 4.85228 4.92886 4.99483 5.06876 5.08784 5.21783 5.27443 5.33612 5.46796 5.69996 5.82139 6.27729 6.62552 6.73110 6.92299 6.94827 7.51466 8.97815 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.005164 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.924074 B = 5420.537371 C = 5823.888060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.215 4.215 3 C 0.010 3.990 4 N -0.477 5.477 5 C 0.037 3.963 6 C 0.201 3.799 7 H 0.048 0.952 8 N -0.665 5.665 9 C 0.220 3.780 10 H 0.016 0.984 11 C -0.158 4.158 12 C -0.512 4.512 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.142 4.142 21 C -0.175 4.175 22 C -0.158 4.158 23 S 0.126 5.874 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.193 0.807 28 H 0.328 0.672 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 -0.450 7.103 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.336 4.336 3 C -0.140 4.140 4 N -0.190 5.190 5 C -0.241 4.241 6 C 0.088 3.912 7 H 0.065 0.935 8 N -0.296 5.296 9 C 0.111 3.889 10 H 0.034 0.966 11 C -0.218 4.218 12 C -0.551 4.551 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.560 5.560 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.162 4.162 21 C -0.212 4.212 22 C -0.195 4.195 23 S 0.380 5.620 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.209 0.791 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.395 -0.905 7.520 18.972 hybrid contribution 0.514 0.720 -1.096 1.409 sum -16.880 -0.185 6.424 18.062 Atomic orbital electron populations 1.20382 0.83989 1.04728 1.04037 1.26476 1.03048 0.93940 1.10130 1.22141 0.86374 1.01451 1.04084 1.66184 1.18782 1.19268 1.14804 1.26887 1.00427 0.91840 1.04971 1.19490 0.84017 0.94332 0.93358 0.93454 1.60664 1.09650 1.41832 1.17460 1.18998 0.87367 0.90630 0.91869 0.96565 1.22282 0.99790 0.99771 0.99930 1.21375 0.99748 0.93253 1.40689 0.93259 1.25624 1.00238 0.96543 0.96108 1.69984 1.25775 1.12232 1.48008 0.85574 0.79122 0.79066 0.77933 1.20366 1.20739 1.19766 1.22068 1.04682 0.97535 0.91934 1.23024 0.96866 0.97634 1.03709 1.23023 0.95728 1.02976 0.97801 1.83736 0.98027 1.11876 1.68336 0.89409 0.90059 0.88406 0.79073 0.85416 0.91491 0.95776 0.95349 0.92995 0.88968 0.89315 0.88303 0.87327 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.42 71.24 0.74 -0.15 16 2 C -0.21 -4.62 6.60 24.64 0.16 -4.46 16 3 C 0.01 0.25 11.25 83.66 0.94 1.19 16 4 N -0.48 -16.18 10.50 -191.44 -2.01 -18.19 16 5 C 0.04 1.21 5.55 88.52 0.49 1.70 16 6 C 0.20 7.62 2.55 44.17 0.11 7.73 16 7 H 0.05 1.82 6.87 -2.39 -0.02 1.81 16 8 N -0.67 -30.09 6.00 -477.16 -2.86 -32.95 16 9 C 0.22 11.32 2.39 44.16 0.11 11.43 16 10 H 0.02 0.92 7.62 -2.39 -0.02 0.90 16 11 C -0.16 -7.76 8.92 71.98 0.64 -7.11 16 12 C -0.51 -29.20 8.84 25.60 0.23 -28.97 16 13 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 14 C 0.01 0.74 5.30 84.66 0.45 1.19 16 15 N -0.92 -53.16 11.32 21.45 0.24 -52.92 16 16 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 20 C -0.14 -5.09 5.12 -10.79 -0.06 -5.14 16 21 C -0.18 -5.59 10.15 30.62 0.31 -5.28 16 22 C -0.16 -4.35 9.87 30.62 0.30 -4.05 16 23 S 0.13 3.15 23.18 -56.49 -1.31 1.84 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 28 H 0.33 14.84 8.09 -89.70 -0.73 14.11 16 29 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 30 H 0.02 1.03 7.43 -2.39 -0.02 1.01 16 31 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 34 H 0.09 2.88 8.05 -2.39 -0.02 2.86 16 35 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 36 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -63.96 322.24 0.85 -63.11 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.34 Total: 24.09 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.43 Total: -31.94 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.63 Total: -104.07 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.31 Total: 1.84 kcal Total: -63.96 0.85 -63.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185344332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.902 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds