Wall clock time and date at job start Mon Mar 30 2020 06:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46778 * 2 1 4 4 C 1.33633 * 122.74590 * 84.97937 * 3 2 1 5 5 S 1.76206 * 107.92332 * 179.79810 * 4 3 2 6 6 C 1.70977 * 90.27959 * 0.28191 * 5 4 3 7 7 C 1.50702 * 124.91554 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.49679 * 179.75857 * 7 6 5 9 9 C 1.53036 * 109.49666 * 59.69325 * 7 6 5 10 10 C 1.53045 * 109.53497 * 178.68442 * 9 7 6 11 11 C 1.53198 * 109.31342 * 61.36427 * 10 9 7 12 12 N 1.46925 * 108.77376 * 305.36486 * 11 10 9 13 13 C 1.36931 * 120.62846 * 233.58067 * 12 11 10 14 14 H 1.08008 * 119.99843 * 152.40033 * 13 12 11 15 15 C 1.38812 * 120.00461 * 332.40196 * 13 12 11 16 16 N 1.31624 * 119.99771 * 334.91471 * 15 13 12 17 17 Si 1.86796 * 120.00026 * 154.90837 * 15 13 12 18 18 H 1.48503 * 109.47037 * 90.00433 * 17 15 13 19 19 H 1.48498 * 109.47658 * 330.00491 * 17 15 13 20 20 H 1.48500 * 109.47270 * 210.00244 * 17 15 13 21 21 C 1.46931 * 118.73724 * 53.86046 * 12 11 10 22 22 N 1.29028 * 110.16925 * 359.70977 * 6 5 4 23 23 H 1.09009 * 109.46732 * 59.99887 * 1 2 3 24 24 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47758 * 300.00075 * 1 2 3 26 26 H 1.08998 * 109.47191 * 240.00240 * 2 1 3 27 27 H 1.08997 * 109.46896 * 119.99775 * 2 1 3 28 28 H 1.08000 * 126.04248 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.46347 * 58.66607 * 9 7 6 30 30 H 1.08999 * 109.46503 * 298.70375 * 9 7 6 31 31 H 1.08998 * 109.50167 * 301.41524 * 10 9 7 32 32 H 1.09002 * 109.52418 * 181.32924 * 10 9 7 33 33 H 1.08999 * 109.58512 * 185.57589 * 11 10 9 34 34 H 1.09004 * 109.58311 * 65.14992 * 11 10 9 35 35 H 0.96996 * 120.00175 * 354.25433 * 16 15 13 36 36 H 1.09000 * 109.58814 * 65.92708 * 21 12 11 37 37 H 1.09000 * 109.58530 * 186.34896 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1804 2.1352 1.1196 5 16 2.7909 3.7261 0.6711 6 6 2.7782 3.2752 -0.9781 7 6 3.1995 4.1653 -2.1189 8 1 3.0955 3.6247 -3.0596 9 6 4.6593 4.5831 -1.9285 10 6 5.0979 5.4603 -3.1035 11 6 4.2341 6.7249 -3.1418 12 7 2.8193 6.3302 -3.1786 13 6 1.9874 6.8065 -4.1563 14 1 1.1308 6.2263 -4.4665 15 6 2.2447 8.0352 -4.7489 16 7 2.9318 8.9492 -4.0969 17 14 1.6161 8.3913 -6.4715 18 1 0.2616 8.9944 -6.3893 19 1 1.5483 7.1256 -7.2452 20 1 2.5387 9.3370 -7.1494 21 6 2.3128 5.4195 -2.1427 22 7 2.3610 2.0608 -1.1041 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9675 1.7960 2.1226 29 1 5.2887 3.6943 -1.8842 30 1 4.7583 5.1445 -0.9995 31 1 4.9759 4.9081 -4.0353 32 1 6.1446 5.7384 -2.9797 33 1 4.4749 7.3050 -4.0326 34 1 4.4233 7.3238 -2.2509 35 1 3.1865 8.7974 -3.1734 36 1 2.3485 5.9142 -1.1721 37 1 1.2855 5.1382 -2.3742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195379299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:14 Heat of formation + Delta-G solvation = 43.852104 kcal Electronic energy + Delta-G solvation = -18106.277429 eV Core-core repulsion = 15396.113758 eV Total energy + Delta-G solvation = -2710.163671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.88068 -37.79465 -34.24347 -33.10568 -30.89101 -30.28858 -28.55318 -25.29719 -25.09209 -23.45755 -22.19491 -21.11464 -19.84798 -18.86383 -17.55113 -17.26495 -15.47823 -14.74947 -14.48517 -14.37713 -14.11430 -13.92742 -13.59367 -13.42348 -13.08855 -12.86583 -12.37797 -12.23223 -12.00717 -11.87841 -11.30719 -11.05295 -10.94633 -10.72375 -10.60728 -10.35062 -10.07566 -10.03878 -9.96519 -9.44612 -9.31364 -9.21710 -8.60300 -8.34444 -6.93185 -6.09552 -3.25754 0.86189 1.54002 1.94518 2.91417 3.50260 3.54511 3.69881 4.12361 4.58563 4.87680 4.96328 5.19627 5.22459 5.27542 5.32717 5.35215 5.44150 5.52731 5.56923 5.71410 5.74574 5.93335 6.01990 6.04203 6.06588 6.14801 6.32015 6.42081 6.44727 6.57180 6.63664 6.71056 7.05888 7.16817 7.94370 7.98787 8.55255 9.07165 9.81512 10.24031 11.19259 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.004924 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.714826 B = 5685.057120 C = 6150.251100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C 0.072 3.928 4 C -0.282 4.282 5 S 0.117 5.883 6 C 0.085 3.915 7 C -0.036 4.036 8 H 0.099 0.901 9 C -0.100 4.100 10 C -0.136 4.136 11 C 0.146 3.854 12 N -0.593 5.593 13 C -0.352 4.352 14 H 0.057 0.943 15 C -0.021 4.021 16 N -0.915 5.915 17 Si 1.066 2.934 18 H -0.294 1.294 19 H -0.292 1.292 20 H -0.286 1.286 21 C 0.160 3.840 22 N -0.481 5.481 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.171 0.829 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.019 0.981 35 H 0.269 0.731 36 H 0.021 0.979 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -13.843 9.967 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.061 4.061 4 C -0.421 4.421 5 S 0.373 5.627 6 C -0.194 4.194 7 C -0.060 4.060 8 H 0.117 0.883 9 C -0.139 4.139 10 C -0.175 4.175 11 C 0.021 3.979 12 N -0.316 5.316 13 C -0.481 4.481 14 H 0.075 0.925 15 C -0.224 4.224 16 N -0.555 5.555 17 Si 0.895 3.105 18 H -0.221 1.221 19 H -0.218 1.218 20 H -0.211 1.211 21 C 0.032 3.968 22 N -0.195 5.195 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.188 0.812 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.851 -12.000 8.735 14.867 hybrid contribution -0.414 -2.084 1.430 2.561 sum 0.437 -14.084 10.165 17.375 Atomic orbital electron populations 1.21729 0.94405 1.01748 1.02420 1.20097 0.96097 0.89531 1.03096 1.20255 1.00595 0.98320 0.86885 1.26723 1.13922 0.97729 1.03716 1.84029 1.60251 1.14131 1.04297 1.27343 0.99836 0.94063 0.98155 1.20710 0.96896 0.95074 0.93290 0.88287 1.21505 0.93839 0.99108 0.99430 1.22063 0.98978 0.98900 0.97540 1.21031 0.83306 0.93096 1.00494 1.44103 1.04913 1.53335 1.29271 1.19992 1.10665 1.02435 1.14999 0.92498 1.25854 1.00152 0.90776 1.05576 1.70757 1.39885 1.32709 1.12105 0.83536 0.75891 0.75363 0.75682 1.22128 1.21818 1.21126 1.21000 0.95418 0.88177 0.92196 1.66194 1.15169 1.06956 1.31161 0.92238 0.92136 0.92675 0.90201 0.90565 0.81200 0.92841 0.92357 0.91971 0.92478 0.89943 0.96327 0.91967 0.96136 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.05 -0.52 6.35 -27.88 -0.18 -0.69 16 3 C 0.07 1.01 5.99 -84.23 -0.50 0.51 16 4 C -0.28 -3.60 11.14 29.12 0.32 -3.28 16 5 S 0.12 1.67 22.45 -107.50 -2.41 -0.74 16 6 C 0.08 1.43 6.04 -13.45 -0.08 1.35 16 7 C -0.04 -0.66 2.78 -91.43 -0.25 -0.91 16 8 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 9 C -0.10 -1.70 5.05 -26.69 -0.13 -1.83 16 10 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 11 C 0.15 3.36 4.69 -3.71 -0.02 3.34 16 12 N -0.59 -14.78 2.85 -172.05 -0.49 -15.27 16 13 C -0.35 -9.80 9.49 -15.06 -0.14 -9.94 16 14 H 0.06 1.60 7.95 -52.48 -0.42 1.19 16 15 C -0.02 -0.60 4.68 -17.43 -0.08 -0.68 16 16 N -0.91 -27.07 12.40 55.49 0.69 -26.38 16 17 Si 1.07 25.14 29.99 -169.99 -5.10 20.05 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 C 0.16 3.43 5.77 -3.48 -0.02 3.41 16 22 N -0.48 -8.16 10.53 -8.06 -0.08 -8.25 16 23 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.96 7.97 -51.93 -0.41 0.54 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 2.12 6.29 -51.93 -0.33 1.79 16 34 H 0.02 0.43 7.87 -51.93 -0.41 0.02 16 35 H 0.27 8.01 6.72 -40.82 -0.27 7.74 16 36 H 0.02 0.44 7.79 -51.93 -0.40 0.03 16 37 H 0.06 1.33 7.93 -51.93 -0.41 0.91 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -30.27 311.34 -9.27 -39.54 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.68 Total: -1.18 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.88 Total: -12.46 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.11 Total: -49.90 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.05 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.41 Total: -0.74 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.27 -9.27 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195379299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.395 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds