Wall clock time and date at job start Mon Mar 30 2020 06:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46778 * 2 1 4 4 C 1.33633 * 122.74590 * 84.97937 * 3 2 1 5 5 S 1.76206 * 107.92332 * 179.79810 * 4 3 2 6 6 C 1.70977 * 90.27959 * 0.28191 * 5 4 3 7 7 C 1.50702 * 124.91554 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.49679 * 179.75857 * 7 6 5 9 9 C 1.53036 * 109.49666 * 59.69325 * 7 6 5 10 10 C 1.53045 * 109.53497 * 178.68442 * 9 7 6 11 11 C 1.53198 * 109.31342 * 61.36427 * 10 9 7 12 12 N 1.46925 * 108.77376 * 305.36486 * 11 10 9 13 13 C 1.36931 * 120.62846 * 233.58067 * 12 11 10 14 14 H 1.08008 * 119.99843 * 152.40033 * 13 12 11 15 15 C 1.38812 * 120.00461 * 332.40196 * 13 12 11 16 16 N 1.31624 * 119.99771 * 334.91471 * 15 13 12 17 17 Si 1.86796 * 120.00026 * 154.90837 * 15 13 12 18 18 H 1.48503 * 109.47037 * 90.00433 * 17 15 13 19 19 H 1.48498 * 109.47658 * 330.00491 * 17 15 13 20 20 H 1.48500 * 109.47270 * 210.00244 * 17 15 13 21 21 C 1.46931 * 118.73724 * 53.86046 * 12 11 10 22 22 N 1.29028 * 110.16925 * 359.70977 * 6 5 4 23 23 H 1.09009 * 109.46732 * 59.99887 * 1 2 3 24 24 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47758 * 300.00075 * 1 2 3 26 26 H 1.08998 * 109.47191 * 240.00240 * 2 1 3 27 27 H 1.08997 * 109.46896 * 119.99775 * 2 1 3 28 28 H 1.08000 * 126.04248 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.46347 * 58.66607 * 9 7 6 30 30 H 1.08999 * 109.46503 * 298.70375 * 9 7 6 31 31 H 1.08998 * 109.50167 * 301.41524 * 10 9 7 32 32 H 1.09002 * 109.52418 * 181.32924 * 10 9 7 33 33 H 1.08999 * 109.58512 * 185.57589 * 11 10 9 34 34 H 1.09004 * 109.58311 * 65.14992 * 11 10 9 35 35 H 0.96996 * 120.00175 * 354.25433 * 16 15 13 36 36 H 1.09000 * 109.58814 * 65.92708 * 21 12 11 37 37 H 1.09000 * 109.58530 * 186.34896 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1804 2.1352 1.1196 5 16 2.7909 3.7261 0.6711 6 6 2.7782 3.2752 -0.9781 7 6 3.1995 4.1653 -2.1189 8 1 3.0955 3.6247 -3.0596 9 6 4.6593 4.5831 -1.9285 10 6 5.0979 5.4603 -3.1035 11 6 4.2341 6.7249 -3.1418 12 7 2.8193 6.3302 -3.1786 13 6 1.9874 6.8065 -4.1563 14 1 1.1308 6.2263 -4.4665 15 6 2.2447 8.0352 -4.7489 16 7 2.9318 8.9492 -4.0969 17 14 1.6161 8.3913 -6.4715 18 1 0.2616 8.9944 -6.3893 19 1 1.5483 7.1256 -7.2452 20 1 2.5387 9.3370 -7.1494 21 6 2.3128 5.4195 -2.1427 22 7 2.3610 2.0608 -1.1041 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9675 1.7960 2.1226 29 1 5.2887 3.6943 -1.8842 30 1 4.7583 5.1445 -0.9995 31 1 4.9759 4.9081 -4.0353 32 1 6.1446 5.7384 -2.9797 33 1 4.4749 7.3050 -4.0326 34 1 4.4233 7.3238 -2.2509 35 1 3.1865 8.7974 -3.1734 36 1 2.3485 5.9142 -1.1721 37 1 1.2855 5.1382 -2.3742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195379299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:13 Heat of formation + Delta-G solvation = 26.590627 kcal Electronic energy + Delta-G solvation = -18107.025943 eV Core-core repulsion = 15396.113758 eV Total energy + Delta-G solvation = -2710.912185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05764 -39.43912 -35.81700 -34.40244 -32.43229 -32.10729 -29.74146 -27.11661 -26.40896 -24.65758 -23.96070 -22.50845 -21.25755 -20.26700 -19.36319 -18.57631 -16.74968 -16.21023 -16.09815 -15.83934 -15.48327 -15.36395 -15.12794 -14.83948 -14.49787 -14.18465 -13.93428 -13.62440 -13.25059 -12.98595 -12.81493 -12.57647 -12.29611 -12.14474 -11.94659 -11.89048 -11.82308 -11.76394 -11.65141 -11.23541 -10.63736 -10.51745 -10.36330 -9.66450 -8.97993 -8.28420 -5.43686 -0.28398 0.40698 0.81967 1.58127 1.65853 1.78236 1.84149 2.61744 2.94000 3.20985 3.50889 3.82499 3.86223 3.94522 4.10067 4.18124 4.29548 4.38528 4.42783 4.44015 4.54837 4.61321 4.64353 4.76136 4.85673 4.99292 5.01341 5.06979 5.07484 5.17958 5.21489 5.23649 5.37373 5.44431 5.80286 6.37266 6.80687 7.00746 7.73141 8.15795 8.97096 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.004924 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.714826 B = 5685.057120 C = 6150.251100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C 0.050 3.950 4 C -0.261 4.261 5 S 0.137 5.863 6 C 0.051 3.949 7 C -0.021 4.021 8 H 0.077 0.923 9 C -0.092 4.092 10 C -0.125 4.125 11 C 0.151 3.849 12 N -0.613 5.613 13 C -0.362 4.362 14 H 0.046 0.954 15 C -0.068 4.068 16 N -0.937 5.937 17 Si 1.115 2.885 18 H -0.283 1.283 19 H -0.279 1.279 20 H -0.286 1.286 21 C 0.164 3.836 22 N -0.502 5.502 23 H 0.033 0.967 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.208 0.792 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.012 0.988 35 H 0.256 0.744 36 H 0.025 0.975 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -15.678 11.481 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.399 4.399 5 S 0.393 5.607 6 C -0.226 4.226 7 C -0.045 4.045 8 H 0.096 0.904 9 C -0.131 4.131 10 C -0.164 4.164 11 C 0.026 3.974 12 N -0.337 5.337 13 C -0.491 4.491 14 H 0.063 0.937 15 C -0.265 4.265 16 N -0.579 5.579 17 Si 0.939 3.061 18 H -0.209 1.209 19 H -0.204 1.204 20 H -0.211 1.211 21 C 0.036 3.964 22 N -0.217 5.217 23 H 0.053 0.947 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.225 0.775 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.035 -13.869 10.269 17.288 hybrid contribution -0.524 -1.590 1.091 1.998 sum 0.512 -15.459 11.360 19.191 Atomic orbital electron populations 1.21714 0.93817 1.02948 1.01480 1.20226 0.96498 0.87688 1.04212 1.20767 1.01175 0.99806 0.86446 1.27191 1.11447 0.96264 1.05038 1.83912 1.59738 1.15059 1.02024 1.26925 1.02204 0.94429 0.99067 1.20306 0.97171 0.93512 0.93494 0.90449 1.21458 0.93098 0.99691 0.98843 1.21937 0.99624 0.96752 0.98087 1.20937 0.83202 0.94769 0.98519 1.44310 1.05594 1.53997 1.29823 1.20189 1.10862 1.02302 1.15764 0.93661 1.27159 1.00185 0.90692 1.08461 1.70869 1.41798 1.33567 1.11648 0.82877 0.75769 0.75713 0.71746 1.20920 1.20445 1.21138 1.21001 0.95179 0.88943 0.91233 1.66173 1.15018 1.07307 1.33200 0.94730 0.89908 0.92007 0.90933 0.87598 0.77537 0.90509 0.91466 0.92781 0.89598 0.93259 0.96990 0.93383 0.95761 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.73 16 2 C -0.05 -0.87 6.35 29.85 0.19 -0.68 16 3 C 0.05 1.29 5.99 41.52 0.25 1.54 16 4 C -0.26 -5.78 11.14 66.77 0.74 -5.03 16 5 S 0.14 3.64 22.45 -56.49 -1.27 2.37 16 6 C 0.05 1.70 6.04 88.52 0.53 2.23 16 7 C -0.02 -0.78 2.78 -11.32 -0.03 -0.81 16 8 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 9 C -0.09 -3.01 5.05 30.62 0.15 -2.86 16 10 C -0.13 -4.56 6.08 30.68 0.19 -4.38 16 11 C 0.15 7.10 4.69 86.36 0.41 7.50 16 12 N -0.61 -31.49 2.85 -698.23 -1.99 -33.47 16 13 C -0.36 -20.76 9.49 84.03 0.80 -19.96 16 14 H 0.05 2.64 7.95 -2.91 -0.02 2.62 16 15 C -0.07 -3.90 4.68 84.86 0.40 -3.51 16 16 N -0.94 -56.96 12.40 21.65 0.27 -56.70 16 17 Si 1.11 51.47 29.99 68.60 2.06 53.53 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 C 0.16 7.17 5.77 86.51 0.50 7.67 16 22 N -0.50 -16.59 10.53 -179.40 -1.89 -18.48 16 23 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.21 2.96 8.06 -2.91 -0.02 2.93 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 2.09 7.97 -2.39 -0.02 2.07 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.05 2.62 6.29 -2.39 -0.02 2.61 16 34 H 0.01 0.57 7.87 -2.38 -0.02 0.56 16 35 H 0.26 15.81 6.72 -92.71 -0.62 15.19 16 36 H 0.02 1.05 7.79 -2.39 -0.02 1.03 16 37 H 0.04 1.90 7.93 -2.39 -0.02 1.88 16 Total: -1.00 -67.23 311.34 3.20 -64.02 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.19 Total: 8.75 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.84 Total: -20.02 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -3.61 Total: -108.65 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.06 Total: 53.53 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.27 Total: 2.37 kcal Total: -67.23 3.20 -64.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195379299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.613 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds