Wall clock time and date at job start Mon Mar 30 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 C 1.33642 * 122.75174 * 85.02453 * 3 2 1 5 5 S 1.76198 * 107.92617 * 179.76351 * 4 3 2 6 6 C 1.70976 * 90.28183 * 0.27952 * 5 4 3 7 7 C 1.50703 * 124.91574 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.49869 * 179.63403 * 7 6 5 9 9 C 1.53041 * 109.49892 * 299.69663 * 7 6 5 10 10 C 1.53040 * 109.53852 * 181.34485 * 9 7 6 11 11 C 1.53191 * 109.31682 * 298.64077 * 10 9 7 12 12 N 1.46928 * 108.77557 * 54.62949 * 11 10 9 13 13 C 1.36939 * 120.62907 * 126.36988 * 12 11 10 14 14 H 1.08004 * 120.00193 * 332.50885 * 13 12 11 15 15 C 1.38805 * 120.00142 * 152.50281 * 13 12 11 16 16 N 1.31627 * 120.00040 * 335.03066 * 15 13 12 17 17 Si 1.86805 * 120.00321 * 155.03039 * 15 13 12 18 18 H 1.48497 * 109.46928 * 59.99734 * 17 15 13 19 19 H 1.48500 * 109.46770 * 300.00395 * 17 15 13 20 20 H 1.48492 * 109.47261 * 180.02562 * 17 15 13 21 21 C 1.46922 * 118.74004 * 306.64952 * 12 11 10 22 22 N 1.29029 * 110.16970 * 359.71772 * 6 5 4 23 23 H 1.09002 * 109.46958 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47231 * 299.99706 * 1 2 3 25 25 H 1.08999 * 109.47251 * 60.00244 * 1 2 3 26 26 H 1.09007 * 109.47155 * 240.00313 * 2 1 3 27 27 H 1.08998 * 109.47090 * 120.00284 * 2 1 3 28 28 H 1.07996 * 126.03325 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.45764 * 61.32891 * 9 7 6 30 30 H 1.08995 * 109.45079 * 301.36514 * 9 7 6 31 31 H 1.08996 * 109.49733 * 178.68595 * 10 9 7 32 32 H 1.09001 * 109.51944 * 58.60753 * 10 9 7 33 33 H 1.09004 * 109.58295 * 294.85011 * 11 10 9 34 34 H 1.09000 * 109.70795 * 174.49196 * 11 10 9 35 35 H 0.96999 * 119.99790 * 354.25710 * 16 15 13 36 36 H 1.08997 * 109.58703 * 173.14589 * 21 12 11 37 37 H 1.09000 * 109.58443 * 293.56442 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1814 2.1349 1.1197 5 16 2.7926 3.7254 0.6712 6 6 2.7790 3.2749 -0.9781 7 6 3.2004 4.1649 -2.1189 8 1 3.0978 3.6238 -3.0596 9 6 2.3141 5.4122 -2.1480 10 6 2.7192 6.3006 -3.3264 11 6 4.1744 6.7454 -3.1488 12 7 5.0154 5.5533 -2.9747 13 6 6.1085 5.3479 -3.7736 14 1 6.1334 5.7606 -4.7713 15 6 7.1846 4.6095 -3.3009 16 7 7.4057 4.5232 -2.0062 17 14 8.3191 3.7381 -4.5022 18 1 8.9398 4.7362 -5.4097 19 1 7.5371 2.7612 -5.3018 20 1 9.3817 3.0237 -3.7502 21 6 4.6577 4.5827 -1.9314 22 7 2.3610 2.0607 -1.1042 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9685 1.7957 2.1227 29 1 2.4359 5.9660 -1.2170 30 1 1.2716 5.1142 -2.2594 31 1 2.0724 7.1773 -3.3603 32 1 2.6210 5.7399 -4.2559 33 1 4.2568 7.3825 -2.2682 34 1 4.5003 7.2970 -4.0307 35 1 6.8686 5.0417 -1.3869 36 1 5.3008 3.7063 -2.0116 37 1 4.7804 5.0398 -0.9495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195379305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:16 Heat of formation + Delta-G solvation = 43.828115 kcal Electronic energy + Delta-G solvation = -18289.544301 eV Core-core repulsion = 15579.379590 eV Total energy + Delta-G solvation = -2710.164711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75403 -37.81054 -34.06095 -33.17769 -31.27738 -29.79341 -28.56953 -25.25976 -25.09146 -23.46664 -22.06705 -21.12786 -19.74232 -18.83776 -17.48074 -17.21464 -15.36073 -14.72117 -14.59093 -14.13356 -14.03097 -13.92679 -13.57673 -13.51705 -13.12996 -12.60845 -12.35266 -12.21229 -11.97521 -11.81533 -11.23905 -11.09009 -10.86073 -10.69472 -10.60719 -10.33609 -10.12868 -10.05901 -9.91095 -9.39541 -9.27067 -9.08651 -8.41160 -8.39350 -6.93575 -6.10184 -3.26434 0.99942 1.67883 2.08040 3.05198 3.49529 3.54465 3.71520 4.23853 4.59209 4.94615 5.04547 5.25784 5.29135 5.33645 5.36301 5.38503 5.49103 5.58358 5.63033 5.76965 5.80263 5.93937 6.07539 6.09131 6.13414 6.17447 6.32971 6.37614 6.44603 6.57203 6.69548 6.76881 6.98878 7.08797 7.97663 8.08537 8.53438 9.06298 9.80210 10.23628 11.18320 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.006100 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.503330 B = 4589.334704 C = 5228.694262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.073 3.927 4 C -0.283 4.283 5 S 0.116 5.884 6 C 0.087 3.913 7 C -0.039 4.039 8 H 0.097 0.903 9 C -0.100 4.100 10 C -0.133 4.133 11 C 0.144 3.856 12 N -0.594 5.594 13 C -0.353 4.353 14 H 0.059 0.941 15 C -0.021 4.021 16 N -0.912 5.912 17 Si 1.063 2.937 18 H -0.292 1.292 19 H -0.292 1.292 20 H -0.285 1.285 21 C 0.163 3.837 22 N -0.481 5.481 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.170 0.830 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.018 0.982 34 H 0.058 0.942 35 H 0.269 0.731 36 H 0.084 0.916 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.871 -3.450 5.410 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.060 4.060 4 C -0.422 4.422 5 S 0.373 5.627 6 C -0.191 4.191 7 C -0.063 4.063 8 H 0.115 0.885 9 C -0.139 4.139 10 C -0.172 4.172 11 C 0.018 3.982 12 N -0.316 5.316 13 C -0.482 4.482 14 H 0.076 0.924 15 C -0.223 4.223 16 N -0.551 5.551 17 Si 0.892 3.108 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.210 1.210 21 C 0.035 3.965 22 N -0.195 5.195 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.187 0.813 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.258 -3.757 5.303 12.999 hybrid contribution -1.659 0.158 0.193 1.678 sum -12.917 -3.599 5.497 14.492 Atomic orbital electron populations 1.21715 0.94578 1.01643 1.02169 1.20095 0.95886 0.89666 1.03256 1.20231 1.00635 0.98225 0.86922 1.26691 1.13701 0.98185 1.03631 1.83959 1.60037 1.14308 1.04431 1.27291 0.99392 0.94313 0.98125 1.20638 0.99156 0.92852 0.93662 0.88485 1.21497 0.97840 0.95286 0.99305 1.21996 0.98764 0.98546 0.97911 1.20969 0.89080 0.89395 0.98743 1.44058 1.28948 1.18376 1.40257 1.19973 0.95004 1.37718 0.95488 0.92360 1.25872 0.96583 1.00668 0.99219 1.70797 1.39289 1.42684 1.02356 0.83564 0.75985 0.76561 0.74698 1.21849 1.21941 1.21026 1.20941 0.89809 0.94580 0.91204 1.66181 1.15363 1.06753 1.31241 0.92202 0.92765 0.92424 0.90128 0.90513 0.81265 0.92335 0.92806 0.92446 0.91926 0.96364 0.92348 0.92033 0.89790 0.96102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.05 -0.59 6.35 -27.89 -0.18 -0.77 16 3 C 0.07 1.14 5.99 -84.23 -0.50 0.63 16 4 C -0.28 -4.05 11.14 29.12 0.32 -3.72 16 5 S 0.12 1.85 22.44 -107.50 -2.41 -0.56 16 6 C 0.09 1.63 6.04 -13.45 -0.08 1.55 16 7 C -0.04 -0.77 2.75 -91.87 -0.25 -1.02 16 8 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 9 C -0.10 -1.71 5.06 -26.69 -0.13 -1.84 16 10 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 11 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 12 N -0.59 -14.80 2.86 -172.59 -0.49 -15.30 16 13 C -0.35 -9.82 9.49 -15.06 -0.14 -9.96 16 14 H 0.06 1.62 7.94 -52.48 -0.42 1.20 16 15 C -0.02 -0.59 4.69 -17.43 -0.08 -0.68 16 16 N -0.91 -27.33 12.41 55.49 0.69 -26.64 16 17 Si 1.06 25.39 29.99 -169.99 -5.10 20.29 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.16 3.82 3.90 -3.94 -0.02 3.81 16 22 N -0.48 -8.99 10.53 -8.06 -0.08 -9.08 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.06 0.96 7.99 -51.93 -0.41 0.55 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 35 H 0.27 8.10 6.71 -40.82 -0.27 7.82 16 36 H 0.08 2.28 6.30 -51.93 -0.33 1.95 16 37 H 0.02 0.50 7.47 -51.93 -0.39 0.11 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -30.72 311.26 -9.27 -39.99 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.68 Total: -0.81 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.88 Total: -12.59 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.11 Total: -51.01 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.41 Total: -0.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.72 -9.27 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195379305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.817 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds